Wall clock time and date at job start Mon Mar 30 2020 06:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46904 * 2 1 4 4 N 1.46497 * 109.46993 * 119.99981 * 2 1 3 5 5 C 1.36932 * 119.99923 * 176.37162 * 4 2 1 6 6 H 1.08006 * 119.99742 * 171.35437 * 5 4 2 7 7 C 1.38815 * 120.00267 * 351.34960 * 5 4 2 8 8 N 1.31615 * 119.99745 * 347.20633 * 7 5 4 9 9 Si 1.86796 * 120.00003 * 167.20355 * 7 5 4 10 10 H 1.48502 * 109.47331 * 180.02562 * 9 7 5 11 11 H 1.48507 * 109.47382 * 300.00301 * 9 7 5 12 12 H 1.48500 * 109.47131 * 60.00214 * 9 7 5 13 13 C 1.46500 * 119.99824 * 356.37059 * 4 2 1 14 14 C 1.53002 * 109.46945 * 264.03410 * 13 4 2 15 15 H 1.09000 * 110.33378 * 302.65144 * 14 13 4 16 16 C 1.54436 * 110.37341 * 180.39858 * 14 13 4 17 17 C 1.54268 * 104.16663 * 216.26448 * 16 14 13 18 18 H 1.09000 * 112.74957 * 238.94539 * 17 16 14 19 19 C 1.54652 * 108.82722 * 113.05813 * 17 16 14 20 20 C 1.55762 * 102.49553 * 212.17012 * 19 17 16 21 21 C 1.54204 * 104.60673 * 37.28413 * 20 19 17 22 22 C 1.53810 * 106.76952 * 336.44017 * 21 20 19 23 23 H 1.09000 * 112.59711 * 237.57974 * 22 21 20 24 24 O 1.44289 * 110.37350 * 65.03152 * 14 13 4 25 25 H 1.08998 * 109.47725 * 300.00282 * 1 2 3 26 26 H 1.09010 * 109.46780 * 60.00088 * 1 2 3 27 27 H 1.09002 * 109.47016 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47332 * 240.00071 * 2 1 3 29 29 H 1.09001 * 109.47104 * 183.58992 * 3 2 1 30 30 H 1.08995 * 109.47332 * 303.59446 * 3 2 1 31 31 H 1.08998 * 109.47077 * 63.59647 * 3 2 1 32 32 H 0.96998 * 119.99904 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.47338 * 24.03864 * 13 4 2 34 34 H 1.09003 * 109.47329 * 144.04030 * 13 4 2 35 35 H 1.09000 * 110.49466 * 334.93669 * 16 14 13 36 36 H 1.09008 * 110.49147 * 97.59305 * 16 14 13 37 37 H 1.08996 * 110.72357 * 330.05748 * 19 17 16 38 38 H 1.09003 * 110.72359 * 93.33755 * 19 17 16 39 39 H 1.09005 * 109.94548 * 278.64138 * 20 19 17 40 40 H 1.09008 * 110.63699 * 156.26969 * 20 19 17 41 41 H 1.09002 * 109.99956 * 217.11899 * 21 20 19 42 42 H 1.08988 * 110.00145 * 95.76931 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.3623 -0.8811 1.3760 6 1 3.7326 -1.2623 2.3163 7 6 4.2489 -0.5844 0.3499 8 7 3.7975 -0.3639 -0.8666 9 14 6.0826 -0.4980 0.6957 10 1 6.8075 -0.1663 -0.5572 11 1 6.3457 0.5523 1.7121 12 1 6.5522 -1.8106 1.2072 13 6 1.0687 -1.1773 2.1999 14 6 0.9375 -0.1445 3.3210 15 1 1.9119 0.0572 3.7661 16 6 -0.0525 -0.6417 4.3970 17 6 -0.7842 0.6365 4.8562 18 1 -0.6672 0.8291 5.9226 19 6 -2.2663 0.5458 4.4237 20 6 -2.6305 2.0360 4.1541 21 6 -1.3604 2.6380 3.5197 22 6 -0.1807 1.7592 3.9687 23 1 0.5873 2.3261 4.4949 24 8 0.3516 1.0735 2.8159 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1281 1.4432 -0.0643 30 1 1.6250 1.9746 -0.8560 31 1 1.7302 1.9373 0.9204 32 1 4.4169 -0.1562 -1.5835 33 1 0.0957 -1.3335 1.7340 34 1 1.4285 -2.1192 2.6140 35 1 -0.7586 -1.3519 3.9668 36 1 0.4851 -1.0939 5.2304 37 1 -2.3667 -0.0431 3.5121 38 1 -2.8766 0.1269 5.2239 39 1 -2.8624 2.5380 5.0935 40 1 -3.4718 2.1072 3.4646 41 1 -1.2178 3.6605 3.8694 42 1 -1.4437 2.6235 2.4331 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720866988.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:37 Heat of formation + Delta-G solvation = -22.358147 kcal Electronic energy + Delta-G solvation = -20647.080698 eV Core-core repulsion = 17820.778210 eV Total energy + Delta-G solvation = -2826.302488 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.83700 -36.61960 -34.76904 -32.10244 -31.42132 -30.26932 -27.67803 -27.38589 -25.73587 -24.31373 -22.69552 -20.96071 -20.09748 -19.59870 -18.77131 -16.53366 -16.52550 -15.39754 -14.92988 -14.68315 -14.04728 -13.79568 -13.43975 -13.35099 -13.01668 -12.45122 -12.11791 -11.64112 -11.54291 -11.24599 -11.12310 -11.05022 -10.84481 -10.80219 -10.74839 -10.61244 -10.56038 -10.50612 -10.23822 -10.14912 -9.96805 -9.41875 -9.37079 -9.26013 -8.90734 -8.21586 -6.63924 -5.42056 -2.96180 3.45563 3.51607 3.52368 4.25703 4.59912 4.65789 4.71575 5.09284 5.27098 5.31359 5.41773 5.50876 5.59731 5.62294 5.67765 5.76555 5.85448 5.93993 5.99360 6.04446 6.14060 6.22016 6.26177 6.36313 6.42220 6.49759 6.56132 6.64298 6.68390 6.73026 6.95036 7.18195 7.27690 7.39533 7.55266 7.66146 7.78751 8.24800 8.26542 8.63899 9.44428 10.07697 10.50808 11.45466 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.031149 B = 0.006711 C = 0.006322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.677783 B = 4171.276350 C = 4427.748591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.188 3.812 3 C -0.135 4.135 4 N -0.590 5.590 5 C -0.235 4.235 6 H 0.068 0.932 7 C -0.008 4.008 8 N -0.905 5.905 9 Si 0.901 3.099 10 H -0.292 1.292 11 H -0.289 1.289 12 H -0.287 1.287 13 C 0.151 3.849 14 C 0.057 3.943 15 H 0.060 0.940 16 C -0.147 4.147 17 C -0.124 4.124 18 H 0.083 0.917 19 C -0.114 4.114 20 C -0.122 4.122 21 C -0.120 4.120 22 C 0.068 3.932 23 H 0.066 0.934 24 O -0.340 6.340 25 H 0.064 0.936 26 H 0.035 0.965 27 H 0.034 0.966 28 H 0.101 0.899 29 H 0.071 0.929 30 H 0.010 0.990 31 H 0.025 0.975 32 H 0.248 0.752 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.072 0.928 36 H 0.065 0.935 37 H 0.072 0.928 38 H 0.062 0.938 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.224 2.660 9.612 15.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.084 3.916 3 C -0.193 4.193 4 N -0.311 5.311 5 C -0.365 4.365 6 H 0.086 0.914 7 C -0.204 4.204 8 N -0.554 5.554 9 Si 0.732 3.268 10 H -0.217 1.217 11 H -0.216 1.216 12 H -0.213 1.213 13 C 0.023 3.977 14 C -0.004 4.004 15 H 0.078 0.922 16 C -0.185 4.185 17 C -0.143 4.143 18 H 0.101 0.899 19 C -0.151 4.151 20 C -0.159 4.159 21 C -0.157 4.157 22 C 0.010 3.990 23 H 0.084 0.916 24 O -0.259 6.259 25 H 0.082 0.918 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.118 0.882 29 H 0.090 0.910 30 H 0.029 0.971 31 H 0.044 0.956 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.091 0.909 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -11.111 2.748 9.182 14.674 hybrid contribution 1.096 0.213 0.577 1.257 sum -10.016 2.960 9.759 14.294 Atomic orbital electron populations 1.22418 1.00154 0.99235 1.00732 1.20683 0.87394 0.92419 0.91123 1.22271 1.03223 0.97377 0.96478 1.44111 1.01949 1.64926 1.20111 1.19189 0.82350 1.37307 0.97616 0.91379 1.24685 0.97529 1.02854 0.95329 1.70010 1.31875 1.53994 0.99486 0.86360 0.85887 0.77745 0.76774 1.21750 1.21570 1.21329 1.20913 0.94591 0.92949 0.89277 1.23938 0.94485 0.86786 0.95157 0.92243 1.23058 0.99065 0.97253 0.99151 1.23229 0.95901 0.95769 0.99387 0.89876 1.22686 0.94935 0.96492 1.00987 1.22497 0.97504 0.95864 1.00058 1.22147 0.93411 0.98068 1.02102 1.23481 0.94272 0.93416 0.87863 0.91624 1.89221 1.75713 1.33876 1.27112 0.91751 0.94557 0.94722 0.88191 0.90980 0.97064 0.95563 0.94050 0.92546 0.93236 0.90919 0.91669 0.90936 0.91914 0.92114 0.91761 0.91756 0.90292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.55 7.84 37.16 0.29 -3.26 16 2 C 0.19 4.71 2.87 -67.93 -0.19 4.51 16 3 C -0.13 -3.40 8.67 37.16 0.32 -3.07 16 4 N -0.59 -14.81 2.65 -165.66 -0.44 -15.25 16 5 C -0.23 -6.43 9.51 -15.06 -0.14 -6.57 16 6 H 0.07 1.82 7.86 -52.48 -0.41 1.41 16 7 C -0.01 -0.23 4.25 -17.43 -0.07 -0.31 16 8 N -0.91 -25.98 8.32 55.49 0.46 -25.52 16 9 Si 0.90 22.19 29.57 -169.99 -5.03 17.17 16 10 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 11 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 12 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 13 C 0.15 3.13 4.82 -4.04 -0.02 3.11 16 14 C 0.06 1.05 3.51 -25.98 -0.09 0.96 16 15 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 16 C -0.15 -2.10 6.16 -25.31 -0.16 -2.25 16 17 C -0.12 -1.60 3.96 -87.86 -0.35 -1.95 16 18 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 19 C -0.11 -1.31 6.29 -24.39 -0.15 -1.47 16 20 C -0.12 -1.33 6.84 -24.63 -0.17 -1.50 16 21 C -0.12 -1.56 6.58 -25.68 -0.17 -1.73 16 22 C 0.07 1.02 4.23 -25.08 -0.11 0.92 16 23 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 24 O -0.34 -6.45 7.58 -35.23 -0.27 -6.72 16 25 H 0.06 1.34 5.27 -51.93 -0.27 1.06 16 26 H 0.04 0.71 8.14 -51.92 -0.42 0.29 16 27 H 0.03 0.69 7.11 -51.93 -0.37 0.33 16 28 H 0.10 2.85 5.87 -51.93 -0.30 2.54 16 29 H 0.07 2.01 5.42 -51.93 -0.28 1.73 16 30 H 0.01 0.25 8.14 -51.93 -0.42 -0.18 16 31 H 0.03 0.65 7.20 -51.93 -0.37 0.27 16 32 H 0.25 7.01 8.31 -40.82 -0.34 6.67 16 33 H 0.06 1.12 5.45 -51.93 -0.28 0.84 16 34 H 0.05 1.00 8.09 -51.93 -0.42 0.58 16 35 H 0.07 1.00 7.12 -51.93 -0.37 0.63 16 36 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 37 H 0.07 0.92 7.59 -51.93 -0.39 0.53 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 41 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 42 H 0.08 1.16 7.92 -51.94 -0.41 0.74 16 LS Contribution 309.60 15.07 4.67 4.67 Total: -1.00 -28.85 309.60 -8.87 -37.72 By element: Atomic # 1 Polarization: 7.79 SS G_CDS: -7.26 Total: 0.54 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: -1.01 Total: -12.60 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.02 Total: -40.78 kcal Atomic # 8 Polarization: -6.45 SS G_CDS: -0.27 Total: -6.72 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.17 kcal Total LS contribution 4.67 Total: 4.67 kcal Total: -28.85 -8.87 -37.72 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720866988.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.363 kcal (2) G-P(sol) polarization free energy of solvation -28.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds