Wall clock time and date at job start Mon Mar 30 2020 06:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.46904 * 2 1 4 4 N 1.46497 * 109.46993 * 119.99981 * 2 1 3 5 5 C 1.36932 * 119.99923 * 176.37162 * 4 2 1 6 6 H 1.08006 * 119.99742 * 171.35437 * 5 4 2 7 7 C 1.38815 * 120.00267 * 351.34960 * 5 4 2 8 8 N 1.31615 * 119.99745 * 347.20633 * 7 5 4 9 9 Si 1.86796 * 120.00003 * 167.20355 * 7 5 4 10 10 H 1.48502 * 109.47331 * 180.02562 * 9 7 5 11 11 H 1.48507 * 109.47382 * 300.00301 * 9 7 5 12 12 H 1.48500 * 109.47131 * 60.00214 * 9 7 5 13 13 C 1.46500 * 119.99824 * 356.37059 * 4 2 1 14 14 C 1.53002 * 109.46945 * 264.03410 * 13 4 2 15 15 H 1.09000 * 110.33378 * 302.65144 * 14 13 4 16 16 C 1.54436 * 110.37341 * 180.39858 * 14 13 4 17 17 C 1.54268 * 104.16663 * 216.26448 * 16 14 13 18 18 H 1.09000 * 112.74957 * 238.94539 * 17 16 14 19 19 C 1.54652 * 108.82722 * 113.05813 * 17 16 14 20 20 C 1.55762 * 102.49553 * 212.17012 * 19 17 16 21 21 C 1.54204 * 104.60673 * 37.28413 * 20 19 17 22 22 C 1.53810 * 106.76952 * 336.44017 * 21 20 19 23 23 H 1.09000 * 112.59711 * 237.57974 * 22 21 20 24 24 O 1.44289 * 110.37350 * 65.03152 * 14 13 4 25 25 H 1.08998 * 109.47725 * 300.00282 * 1 2 3 26 26 H 1.09010 * 109.46780 * 60.00088 * 1 2 3 27 27 H 1.09002 * 109.47016 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47332 * 240.00071 * 2 1 3 29 29 H 1.09001 * 109.47104 * 183.58992 * 3 2 1 30 30 H 1.08995 * 109.47332 * 303.59446 * 3 2 1 31 31 H 1.08998 * 109.47077 * 63.59647 * 3 2 1 32 32 H 0.96998 * 119.99904 * 179.97438 * 8 7 5 33 33 H 1.08998 * 109.47338 * 24.03864 * 13 4 2 34 34 H 1.09003 * 109.47329 * 144.04030 * 13 4 2 35 35 H 1.09000 * 110.49466 * 334.93669 * 16 14 13 36 36 H 1.09008 * 110.49147 * 97.59305 * 16 14 13 37 37 H 1.08996 * 110.72357 * 330.05748 * 19 17 16 38 38 H 1.09003 * 110.72359 * 93.33755 * 19 17 16 39 39 H 1.09005 * 109.94548 * 278.64138 * 20 19 17 40 40 H 1.09008 * 110.63699 * 156.26969 * 20 19 17 41 41 H 1.09002 * 109.99956 * 217.11899 * 21 20 19 42 42 H 1.08988 * 110.00145 * 95.76931 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 3.3623 -0.8811 1.3760 6 1 3.7326 -1.2623 2.3163 7 6 4.2489 -0.5844 0.3499 8 7 3.7975 -0.3639 -0.8666 9 14 6.0826 -0.4980 0.6957 10 1 6.8075 -0.1663 -0.5572 11 1 6.3457 0.5523 1.7121 12 1 6.5522 -1.8106 1.2072 13 6 1.0687 -1.1773 2.1999 14 6 0.9375 -0.1445 3.3210 15 1 1.9119 0.0572 3.7661 16 6 -0.0525 -0.6417 4.3970 17 6 -0.7842 0.6365 4.8562 18 1 -0.6672 0.8291 5.9226 19 6 -2.2663 0.5458 4.4237 20 6 -2.6305 2.0360 4.1541 21 6 -1.3604 2.6380 3.5197 22 6 -0.1807 1.7592 3.9687 23 1 0.5873 2.3261 4.4949 24 8 0.3516 1.0735 2.8159 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8900 29 1 3.1281 1.4432 -0.0643 30 1 1.6250 1.9746 -0.8560 31 1 1.7302 1.9373 0.9204 32 1 4.4169 -0.1562 -1.5835 33 1 0.0957 -1.3335 1.7340 34 1 1.4285 -2.1192 2.6140 35 1 -0.7586 -1.3519 3.9668 36 1 0.4851 -1.0939 5.2304 37 1 -2.3667 -0.0431 3.5121 38 1 -2.8766 0.1269 5.2239 39 1 -2.8624 2.5380 5.0935 40 1 -3.4718 2.1072 3.4646 41 1 -1.2178 3.6605 3.8694 42 1 -1.4437 2.6235 2.4331 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720866988.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:36 Heat of formation + Delta-G solvation = -37.432568 kcal Electronic energy + Delta-G solvation = -20647.734374 eV Core-core repulsion = 17820.778210 eV Total energy + Delta-G solvation = -2826.956164 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.06140 -38.42287 -36.03453 -33.70169 -33.25228 -31.89041 -29.21068 -28.47992 -27.55167 -26.05892 -24.40472 -22.22168 -21.31116 -20.74412 -20.64598 -18.50152 -17.69049 -16.86907 -16.57089 -16.17605 -15.58310 -15.38959 -15.02477 -14.82450 -14.27620 -13.99643 -13.45593 -13.32588 -13.31752 -12.97392 -12.70986 -12.56518 -12.55135 -12.41078 -12.14046 -12.08076 -11.84618 -11.80223 -11.54911 -11.48194 -11.37000 -11.35058 -11.20293 -11.13610 -10.31140 -10.30329 -8.67396 -7.52226 -5.07997 1.46748 1.49636 1.54864 2.56581 3.07048 3.39850 3.62200 3.65943 3.76464 4.03046 4.24846 4.29131 4.36255 4.46301 4.58941 4.62494 4.66716 4.73631 4.79071 4.82158 4.86241 4.94237 5.02457 5.08419 5.10967 5.15412 5.20469 5.21827 5.26934 5.29468 5.35660 5.40373 5.48304 5.53918 5.57755 5.64736 6.16542 6.18736 6.34885 6.55898 7.33655 8.08196 8.45763 9.32114 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.031149 B = 0.006711 C = 0.006322 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 898.677783 B = 4171.276350 C = 4427.748591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.189 3.811 3 C -0.119 4.119 4 N -0.604 5.604 5 C -0.243 4.243 6 H 0.068 0.932 7 C -0.057 4.057 8 N -0.926 5.926 9 Si 0.957 3.043 10 H -0.296 1.296 11 H -0.290 1.290 12 H -0.278 1.278 13 C 0.148 3.852 14 C 0.062 3.938 15 H 0.032 0.968 16 C -0.138 4.138 17 C -0.115 4.115 18 H 0.105 0.895 19 C -0.111 4.111 20 C -0.115 4.115 21 C -0.119 4.119 22 C 0.054 3.946 23 H 0.060 0.940 24 O -0.367 6.367 25 H 0.069 0.931 26 H 0.048 0.952 27 H 0.043 0.957 28 H 0.065 0.935 29 H 0.041 0.959 30 H 0.020 0.980 31 H 0.022 0.978 32 H 0.241 0.759 33 H 0.066 0.934 34 H 0.052 0.948 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.058 0.942 38 H 0.086 0.914 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.976 2.700 11.496 17.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.084 3.916 3 C -0.178 4.178 4 N -0.326 5.326 5 C -0.373 4.373 6 H 0.086 0.914 7 C -0.250 4.250 8 N -0.575 5.575 9 Si 0.787 3.213 10 H -0.222 1.222 11 H -0.217 1.217 12 H -0.204 1.204 13 C 0.021 3.979 14 C 0.001 3.999 15 H 0.050 0.950 16 C -0.176 4.176 17 C -0.134 4.134 18 H 0.123 0.877 19 C -0.148 4.148 20 C -0.152 4.152 21 C -0.156 4.156 22 C -0.004 4.004 23 H 0.078 0.922 24 O -0.287 6.287 25 H 0.088 0.912 26 H 0.067 0.933 27 H 0.062 0.938 28 H 0.082 0.918 29 H 0.060 0.940 30 H 0.039 0.961 31 H 0.041 0.959 32 H 0.051 0.949 33 H 0.084 0.916 34 H 0.070 0.930 35 H 0.100 0.900 36 H 0.098 0.902 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.099 0.901 40 H 0.090 0.910 41 H 0.095 0.905 42 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.888 2.778 11.101 17.235 hybrid contribution 1.630 0.219 0.010 1.644 sum -11.258 2.997 11.111 16.099 Atomic orbital electron populations 1.22224 0.97096 1.00075 1.01604 1.20461 0.89750 0.91457 0.89971 1.22088 1.01113 0.98061 0.96578 1.44290 1.01956 1.65207 1.21136 1.19461 0.83808 1.36635 0.97413 0.91376 1.25317 1.00846 1.03460 0.95362 1.70236 1.32359 1.55024 0.99881 0.85480 0.81949 0.77768 0.76129 1.22242 1.21696 1.20428 1.21081 0.93984 0.93665 0.89149 1.23630 0.94654 0.86474 0.95125 0.95038 1.22988 0.98303 0.98175 0.98127 1.23244 0.96446 0.93627 1.00076 0.87706 1.22685 0.94134 0.96839 1.01160 1.22484 0.96381 0.95358 1.01007 1.22154 0.93813 0.98682 1.00977 1.23757 0.94852 0.94353 0.87398 0.92237 1.89179 1.75936 1.34278 1.29285 0.91203 0.93306 0.93845 0.91777 0.94021 0.96088 0.95914 0.94904 0.91561 0.93027 0.90011 0.90241 0.92319 0.89508 0.90065 0.90975 0.90493 0.92366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.32 7.84 71.98 0.56 -5.75 16 2 C 0.19 9.55 2.87 44.99 0.13 9.67 16 3 C -0.12 -6.13 8.67 71.98 0.62 -5.51 16 4 N -0.60 -30.69 2.65 -678.03 -1.80 -32.49 16 5 C -0.24 -13.50 9.51 84.03 0.80 -12.70 16 6 H 0.07 3.69 7.86 -2.91 -0.02 3.67 16 7 C -0.06 -3.20 4.25 84.86 0.36 -2.84 16 8 N -0.93 -54.61 8.32 21.65 0.18 -54.43 16 9 Si 0.96 46.47 29.57 68.60 2.03 48.50 16 10 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 11 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 13 C 0.15 6.06 4.82 86.38 0.42 6.48 16 14 C 0.06 2.24 3.51 31.08 0.11 2.35 16 15 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 16 C -0.14 -3.60 6.16 31.51 0.19 -3.41 16 17 C -0.12 -2.62 3.96 -9.00 -0.04 -2.66 16 18 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 19 C -0.11 -2.16 6.29 32.11 0.20 -1.95 16 20 C -0.11 -2.11 6.84 31.96 0.22 -1.89 16 21 C -0.12 -2.86 6.58 31.28 0.21 -2.66 16 22 C 0.05 1.55 4.23 31.66 0.13 1.68 16 23 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 24 O -0.37 -13.72 7.58 -148.98 -1.13 -14.85 16 25 H 0.07 2.83 5.27 -2.39 -0.01 2.81 16 26 H 0.05 1.87 8.14 -2.38 -0.02 1.85 16 27 H 0.04 1.69 7.11 -2.39 -0.02 1.68 16 28 H 0.06 3.76 5.87 -2.39 -0.01 3.74 16 29 H 0.04 2.38 5.42 -2.39 -0.01 2.37 16 30 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 31 H 0.02 1.13 7.20 -2.39 -0.02 1.11 16 32 H 0.24 14.02 8.31 -92.71 -0.77 13.25 16 33 H 0.07 2.57 5.45 -2.39 -0.01 2.55 16 34 H 0.05 2.06 8.09 -2.39 -0.02 2.04 16 35 H 0.08 2.01 7.12 -2.39 -0.02 1.99 16 36 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 37 H 0.06 1.32 7.59 -2.39 -0.02 1.30 16 38 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.08 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.07 1.24 8.14 -2.38 -0.02 1.22 16 41 H 0.08 1.62 8.14 -2.39 -0.02 1.61 16 42 H 0.06 1.64 7.92 -2.39 -0.02 1.62 16 Total: -1.00 -63.00 309.60 4.18 -58.82 By element: Atomic # 1 Polarization: 12.67 SS G_CDS: 0.97 Total: 13.64 kcal Atomic # 6 Polarization: -23.11 SS G_CDS: 3.92 Total: -19.19 kcal Atomic # 7 Polarization: -85.30 SS G_CDS: -1.62 Total: -86.91 kcal Atomic # 8 Polarization: -13.72 SS G_CDS: -1.13 Total: -14.85 kcal Atomic # 14 Polarization: 46.47 SS G_CDS: 2.03 Total: 48.50 kcal Total: -63.00 4.18 -58.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720866988.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.387 kcal (2) G-P(sol) polarization free energy of solvation -62.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds