Wall clock time and date at job start Mon Mar 30 2020 06:03:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47380 * 2 1 4 4 N 1.46498 * 109.47427 * 120.00780 * 2 1 3 5 5 C 1.36936 * 120.00475 * 125.38898 * 4 2 1 6 6 H 1.08004 * 119.99556 * 321.85360 * 5 4 2 7 7 C 1.38811 * 120.00026 * 141.86006 * 5 4 2 8 8 N 1.31618 * 119.99874 * 156.20952 * 7 5 4 9 9 Si 1.86801 * 120.00135 * 336.20159 * 7 5 4 10 10 H 1.48496 * 109.46679 * 95.25042 * 9 7 5 11 11 H 1.48497 * 109.47256 * 215.24820 * 9 7 5 12 12 H 1.48503 * 109.47009 * 335.25550 * 9 7 5 13 13 C 1.46509 * 119.99759 * 305.38342 * 4 2 1 14 14 C 1.52994 * 109.46802 * 90.00029 * 13 4 2 15 15 H 1.09001 * 109.81780 * 305.58932 * 14 13 4 16 16 C 1.54233 * 109.88756 * 184.68438 * 14 13 4 17 17 C 1.56425 * 103.31347 * 219.80648 * 16 14 13 18 18 H 1.09001 * 115.32801 * 155.15667 * 17 16 14 19 19 C 1.54845 * 107.56019 * 284.47997 * 17 16 14 20 20 C 1.54238 * 104.32932 * 143.67176 * 19 17 16 21 21 C 1.53931 * 106.51475 * 335.44650 * 20 19 17 22 22 C 1.53993 * 106.84925 * 0.94074 * 21 20 19 23 23 H 1.09005 * 112.05354 * 144.28267 * 22 21 20 24 24 O 1.43074 * 109.82212 * 66.45632 * 14 13 4 25 25 H 1.09008 * 109.47148 * 299.99778 * 1 2 3 26 26 H 1.08999 * 109.47576 * 59.99501 * 1 2 3 27 27 H 1.09000 * 109.47275 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47148 * 240.00222 * 2 1 3 29 29 H 1.08999 * 109.46911 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47174 * 300.00746 * 3 2 1 31 31 H 1.08997 * 109.46783 * 60.00522 * 3 2 1 32 32 H 0.96994 * 120.00055 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.46832 * 330.00207 * 13 4 2 34 34 H 1.08996 * 109.46903 * 210.00334 * 13 4 2 35 35 H 1.08998 * 110.75169 * 337.40606 * 16 14 13 36 36 H 1.09001 * 110.75604 * 100.59072 * 16 14 13 37 37 H 1.09002 * 110.44117 * 24.98042 * 19 17 16 38 38 H 1.09000 * 110.50392 * 262.39760 * 19 17 16 39 39 H 1.09002 * 110.05685 * 216.16894 * 20 19 17 40 40 H 1.09001 * 110.05632 * 94.72523 * 20 19 17 41 41 H 1.08999 * 109.98661 * 120.28847 * 21 20 19 42 42 H 1.09000 * 109.98586 * 241.59634 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1960 5 6 2.8941 -1.7363 1.0734 6 1 2.7838 -2.4406 0.2621 7 6 3.9234 -1.8909 1.9918 8 7 4.4616 -3.0766 2.1836 9 14 4.5449 -0.4161 2.9552 10 1 3.8613 -0.3616 4.2723 11 1 6.0099 -0.5421 3.1628 12 1 4.2575 0.8276 2.1965 13 6 1.5698 -0.2628 2.5235 14 6 0.3050 -1.0333 2.9073 15 1 -0.4495 -0.9158 2.1295 16 6 -0.2422 -0.5079 4.2502 17 6 -0.7050 -1.8092 4.9845 18 1 -0.7302 -1.7469 6.0724 19 6 -2.0334 -2.2660 4.3329 20 6 -1.9540 -3.8063 4.3437 21 6 -0.4580 -4.1671 4.3802 22 6 0.3207 -2.8391 4.4147 23 1 1.2192 -2.9072 5.0282 24 8 0.6144 -2.4197 3.0778 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4424 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 5.1811 -3.1846 2.8251 33 1 1.3537 0.8055 2.5071 34 1 2.3535 -0.4637 3.2540 35 1 0.5456 -0.0191 4.8235 36 1 -1.0780 0.1724 4.0871 37 1 -2.1029 -1.8953 3.3102 38 1 -2.8847 -1.9243 4.9217 39 1 -2.4142 -4.2106 3.4421 40 1 -2.4553 -4.2002 5.2278 41 1 -0.2375 -4.7515 5.2735 42 1 -0.1895 -4.7333 3.4884 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720866989.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:40 Heat of formation + Delta-G solvation = -29.100420 kcal Electronic energy + Delta-G solvation = -20751.209275 eV Core-core repulsion = 17924.614420 eV Total energy + Delta-G solvation = -2826.594855 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.85071 -36.84949 -34.49028 -32.31484 -31.76150 -30.16439 -28.02909 -27.47037 -26.45127 -24.40938 -22.94490 -20.78660 -20.06060 -19.79403 -18.90718 -16.94722 -16.05711 -15.78618 -14.70990 -14.36494 -14.31384 -14.00095 -13.69967 -13.33575 -12.97151 -12.60591 -12.16411 -12.12882 -12.05281 -11.83660 -11.40236 -11.37199 -11.14278 -10.86853 -10.79334 -10.57253 -10.51276 -10.42146 -10.40761 -10.13645 -10.07626 -9.82241 -9.66553 -9.38591 -8.62852 -8.27306 -6.64217 -5.81109 -3.18411 3.38783 3.54221 3.59520 4.34505 4.67351 4.73474 4.78779 5.03325 5.20078 5.41769 5.47030 5.51573 5.53710 5.63312 5.73439 5.75776 5.87765 5.91297 5.95631 6.00563 6.10708 6.13641 6.17432 6.21016 6.21948 6.25221 6.36095 6.43251 6.44967 6.47160 6.52762 6.61800 6.63808 6.70036 6.94971 7.02260 7.11456 8.06052 8.25662 8.57897 9.16380 9.91078 10.31182 11.35431 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.019660 B = 0.009629 C = 0.007876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.863910 B = 2907.126750 C = 3554.307461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.163 3.837 3 C -0.164 4.164 4 N -0.592 5.592 5 C -0.246 4.246 6 H 0.074 0.926 7 C 0.043 3.957 8 N -0.898 5.898 9 Si 0.865 3.135 10 H -0.290 1.290 11 H -0.305 1.305 12 H -0.270 1.270 13 C 0.128 3.872 14 C 0.065 3.935 15 H 0.073 0.927 16 C -0.151 4.151 17 C -0.128 4.128 18 H 0.097 0.903 19 C -0.114 4.114 20 C -0.119 4.119 21 C -0.126 4.126 22 C 0.077 3.923 23 H 0.070 0.930 24 O -0.327 6.327 25 H 0.046 0.954 26 H 0.042 0.958 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.053 0.947 30 H 0.041 0.959 31 H 0.041 0.959 32 H 0.258 0.742 33 H 0.044 0.956 34 H 0.057 0.943 35 H 0.067 0.933 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.059 0.941 39 H 0.061 0.939 40 H 0.057 0.943 41 H 0.065 0.935 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.227 4.456 4.282 13.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.056 3.944 3 C -0.224 4.224 4 N -0.313 5.313 5 C -0.375 4.375 6 H 0.091 0.909 7 C -0.157 4.157 8 N -0.539 5.539 9 Si 0.696 3.304 10 H -0.219 1.219 11 H -0.233 1.233 12 H -0.194 1.194 13 C 0.001 3.999 14 C 0.005 3.995 15 H 0.091 0.909 16 C -0.189 4.189 17 C -0.146 4.146 18 H 0.115 0.885 19 C -0.152 4.152 20 C -0.157 4.157 21 C -0.164 4.164 22 C 0.019 3.981 23 H 0.088 0.912 24 O -0.245 6.245 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.073 0.927 28 H 0.088 0.912 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.068 0.932 33 H 0.062 0.938 34 H 0.075 0.925 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.078 0.922 39 H 0.080 0.920 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -11.993 4.206 4.147 13.368 hybrid contribution 0.390 0.979 0.977 1.437 sum -11.603 5.185 5.124 13.703 Atomic orbital electron populations 1.22356 0.98473 1.01161 0.99844 1.20489 0.91515 0.91126 0.91236 1.22347 1.01573 0.98830 0.99608 1.44056 1.51234 1.36940 0.99050 1.18626 1.03963 1.00855 1.14026 0.90876 1.25340 0.96888 0.95592 0.97850 1.69910 1.27315 1.21019 1.35699 0.87105 0.77123 0.86418 0.79731 1.21862 1.23292 1.19444 1.21553 0.94470 0.94790 0.89050 1.23626 0.97900 0.83213 0.94740 0.90933 1.23415 1.00637 0.97568 0.97305 1.23973 0.96032 0.95273 0.99353 0.88493 1.22382 0.96314 0.95656 1.00833 1.22112 0.96696 0.95789 1.01093 1.22282 0.94136 0.97520 1.02464 1.23421 0.95358 0.93295 0.86053 0.91225 1.88597 1.86313 1.23522 1.26081 0.93526 0.93873 0.92651 0.91226 0.92811 0.93953 0.93950 0.93211 0.93806 0.92511 0.91457 0.90924 0.91139 0.92218 0.92002 0.92412 0.91646 0.90445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.70 7.90 37.15 0.29 -2.40 16 2 C 0.16 3.27 3.32 -67.93 -0.23 3.05 16 3 C -0.16 -2.97 9.26 37.16 0.34 -2.62 16 4 N -0.59 -14.12 1.97 -165.66 -0.33 -14.45 16 5 C -0.25 -6.99 9.39 -15.06 -0.14 -7.13 16 6 H 0.07 2.28 8.06 -52.48 -0.42 1.85 16 7 C 0.04 1.27 5.27 -17.43 -0.09 1.18 16 8 N -0.90 -28.03 13.97 55.49 0.78 -27.26 16 9 Si 0.87 22.71 25.19 -169.99 -4.28 18.43 16 10 H -0.29 -7.46 6.65 56.52 0.38 -7.08 16 11 H -0.30 -8.15 7.11 56.52 0.40 -7.74 16 12 H -0.27 -6.89 7.11 56.52 0.40 -6.49 16 13 C 0.13 2.81 3.36 -4.04 -0.01 2.79 16 14 C 0.07 1.27 2.75 -26.09 -0.07 1.20 16 15 H 0.07 1.37 5.08 -51.93 -0.26 1.11 16 16 C -0.15 -2.36 5.83 -24.24 -0.14 -2.50 16 17 C -0.13 -1.87 4.48 -86.13 -0.39 -2.26 16 18 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 19 C -0.11 -1.51 6.02 -25.11 -0.15 -1.66 16 20 C -0.12 -1.57 6.80 -25.60 -0.17 -1.74 16 21 C -0.13 -1.98 6.49 -25.73 -0.17 -2.15 16 22 C 0.08 1.41 4.33 -24.54 -0.11 1.30 16 23 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 24 O -0.33 -7.31 10.04 -35.23 -0.35 -7.66 16 25 H 0.05 0.75 6.48 -51.92 -0.34 0.41 16 26 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.05 0.99 7.82 -51.93 -0.41 0.59 16 28 H 0.07 1.45 7.90 -51.92 -0.41 1.04 16 29 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.04 0.74 6.88 -51.93 -0.36 0.38 16 32 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 33 H 0.04 0.87 6.70 -51.93 -0.35 0.52 16 34 H 0.06 1.41 3.46 -51.93 -0.18 1.23 16 35 H 0.07 1.07 7.84 -51.93 -0.41 0.66 16 36 H 0.07 0.97 8.08 -51.93 -0.42 0.55 16 37 H 0.07 1.01 6.99 -51.93 -0.36 0.65 16 38 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 40 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.08 1.36 8.08 -51.93 -0.42 0.94 16 LS Contribution 312.21 15.07 4.70 4.70 Total: -1.00 -31.29 312.21 -7.81 -39.10 By element: Atomic # 1 Polarization: 7.38 SS G_CDS: -7.30 Total: 0.09 kcal Atomic # 6 Polarization: -11.92 SS G_CDS: -1.03 Total: -12.95 kcal Atomic # 7 Polarization: -42.16 SS G_CDS: 0.45 Total: -41.71 kcal Atomic # 8 Polarization: -7.31 SS G_CDS: -0.35 Total: -7.66 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -4.28 Total: 18.43 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -31.29 -7.81 -39.10 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720866989.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.002 kcal (2) G-P(sol) polarization free energy of solvation -31.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.286 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.102 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds