Wall clock time and date at job start Mon Mar 30 2020 06:03:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53003 * 109.47380 * 2 1 4 4 N 1.46498 * 109.47427 * 120.00780 * 2 1 3 5 5 C 1.36936 * 120.00475 * 125.38898 * 4 2 1 6 6 H 1.08004 * 119.99556 * 321.85360 * 5 4 2 7 7 C 1.38811 * 120.00026 * 141.86006 * 5 4 2 8 8 N 1.31618 * 119.99874 * 156.20952 * 7 5 4 9 9 Si 1.86801 * 120.00135 * 336.20159 * 7 5 4 10 10 H 1.48496 * 109.46679 * 95.25042 * 9 7 5 11 11 H 1.48497 * 109.47256 * 215.24820 * 9 7 5 12 12 H 1.48503 * 109.47009 * 335.25550 * 9 7 5 13 13 C 1.46509 * 119.99759 * 305.38342 * 4 2 1 14 14 C 1.52994 * 109.46802 * 90.00029 * 13 4 2 15 15 H 1.09001 * 109.81780 * 305.58932 * 14 13 4 16 16 C 1.54233 * 109.88756 * 184.68438 * 14 13 4 17 17 C 1.56425 * 103.31347 * 219.80648 * 16 14 13 18 18 H 1.09001 * 115.32801 * 155.15667 * 17 16 14 19 19 C 1.54845 * 107.56019 * 284.47997 * 17 16 14 20 20 C 1.54238 * 104.32932 * 143.67176 * 19 17 16 21 21 C 1.53931 * 106.51475 * 335.44650 * 20 19 17 22 22 C 1.53993 * 106.84925 * 0.94074 * 21 20 19 23 23 H 1.09005 * 112.05354 * 144.28267 * 22 21 20 24 24 O 1.43074 * 109.82212 * 66.45632 * 14 13 4 25 25 H 1.09008 * 109.47148 * 299.99778 * 1 2 3 26 26 H 1.08999 * 109.47576 * 59.99501 * 1 2 3 27 27 H 1.09000 * 109.47275 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47148 * 240.00222 * 2 1 3 29 29 H 1.08999 * 109.46911 * 179.97438 * 3 2 1 30 30 H 1.08999 * 109.47174 * 300.00746 * 3 2 1 31 31 H 1.08997 * 109.46783 * 60.00522 * 3 2 1 32 32 H 0.96994 * 120.00055 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.46832 * 330.00207 * 13 4 2 34 34 H 1.08996 * 109.46903 * 210.00334 * 13 4 2 35 35 H 1.08998 * 110.75169 * 337.40606 * 16 14 13 36 36 H 1.09001 * 110.75604 * 100.59072 * 16 14 13 37 37 H 1.09002 * 110.44117 * 24.98042 * 19 17 16 38 38 H 1.09000 * 110.50392 * 262.39760 * 19 17 16 39 39 H 1.09002 * 110.05685 * 216.16894 * 20 19 17 40 40 H 1.09001 * 110.05632 * 94.72523 * 20 19 17 41 41 H 1.08999 * 109.98661 * 120.28847 * 21 20 19 42 42 H 1.09000 * 109.98586 * 241.59634 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1960 5 6 2.8941 -1.7363 1.0734 6 1 2.7838 -2.4406 0.2621 7 6 3.9234 -1.8909 1.9918 8 7 4.4616 -3.0766 2.1836 9 14 4.5449 -0.4161 2.9552 10 1 3.8613 -0.3616 4.2723 11 1 6.0099 -0.5421 3.1628 12 1 4.2575 0.8276 2.1965 13 6 1.5698 -0.2628 2.5235 14 6 0.3050 -1.0333 2.9073 15 1 -0.4495 -0.9158 2.1295 16 6 -0.2422 -0.5079 4.2502 17 6 -0.7050 -1.8092 4.9845 18 1 -0.7302 -1.7469 6.0724 19 6 -2.0334 -2.2660 4.3329 20 6 -1.9540 -3.8063 4.3437 21 6 -0.4580 -4.1671 4.3802 22 6 0.3207 -2.8391 4.4147 23 1 1.2192 -2.9072 5.0282 24 8 0.6144 -2.4197 3.0778 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8901 29 1 3.1300 1.4424 0.0005 30 1 1.6766 1.9564 -0.8899 31 1 1.6767 1.9563 0.8900 32 1 5.1811 -3.1846 2.8251 33 1 1.3537 0.8055 2.5071 34 1 2.3535 -0.4637 3.2540 35 1 0.5456 -0.0191 4.8235 36 1 -1.0780 0.1724 4.0871 37 1 -2.1029 -1.8953 3.3102 38 1 -2.8847 -1.9243 4.9217 39 1 -2.4142 -4.2106 3.4421 40 1 -2.4553 -4.2002 5.2278 41 1 -0.2375 -4.7515 5.2735 42 1 -0.1895 -4.7333 3.4884 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720866989.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:39 Heat of formation + Delta-G solvation = -48.613327 kcal Electronic energy + Delta-G solvation = -20752.055418 eV Core-core repulsion = 17924.614420 eV Total energy + Delta-G solvation = -2827.440998 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.22611 -38.53619 -35.85929 -34.36308 -33.21971 -31.91896 -29.55808 -28.74833 -27.87333 -26.05462 -24.80723 -22.18640 -21.22306 -21.18078 -20.57445 -18.92270 -17.61564 -17.43410 -16.38008 -15.94187 -15.68348 -15.37166 -15.30262 -14.89260 -14.69361 -14.04617 -13.94334 -13.84362 -13.65063 -13.22476 -12.89596 -12.70983 -12.49784 -12.46195 -12.22322 -12.14194 -12.06834 -11.92942 -11.80351 -11.58354 -11.46959 -11.35173 -11.31706 -11.12310 -10.54641 -10.14400 -8.61620 -8.09986 -5.42530 1.26841 1.37349 1.48645 2.47556 2.97404 3.14222 3.43055 3.55950 3.63590 3.99643 4.12514 4.20893 4.27313 4.28906 4.41328 4.50655 4.50872 4.60243 4.63455 4.67516 4.73756 4.79489 4.85385 4.88811 4.94483 4.97693 5.03384 5.07238 5.10611 5.13833 5.20880 5.23352 5.31689 5.43751 5.49508 5.53125 5.62742 6.03853 6.26777 6.62899 7.12287 7.76921 8.18166 9.11243 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.019660 B = 0.009629 C = 0.007876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.863910 B = 2907.126750 C = 3554.307461 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.152 3.848 3 C -0.155 4.155 4 N -0.603 5.603 5 C -0.228 4.228 6 H 0.027 0.973 7 C -0.014 4.014 8 N -0.949 5.949 9 Si 0.932 3.068 10 H -0.283 1.283 11 H -0.313 1.313 12 H -0.255 1.255 13 C 0.123 3.877 14 C 0.062 3.938 15 H 0.079 0.921 16 C -0.145 4.145 17 C -0.111 4.111 18 H 0.124 0.876 19 C -0.109 4.109 20 C -0.114 4.114 21 C -0.126 4.126 22 C 0.056 3.944 23 H 0.042 0.958 24 O -0.373 6.373 25 H 0.060 0.940 26 H 0.075 0.925 27 H 0.035 0.965 28 H 0.049 0.951 29 H 0.029 0.971 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.256 0.744 33 H 0.072 0.928 34 H 0.027 0.973 35 H 0.064 0.936 36 H 0.107 0.893 37 H 0.057 0.943 38 H 0.093 0.907 39 H 0.059 0.941 40 H 0.086 0.914 41 H 0.081 0.919 42 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.135 7.228 5.556 17.669 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.046 3.954 3 C -0.213 4.213 4 N -0.326 5.326 5 C -0.358 4.358 6 H 0.044 0.956 7 C -0.209 4.209 8 N -0.594 5.594 9 Si 0.762 3.238 10 H -0.210 1.210 11 H -0.243 1.243 12 H -0.179 1.179 13 C -0.002 4.002 14 C 0.003 3.997 15 H 0.097 0.903 16 C -0.183 4.183 17 C -0.130 4.130 18 H 0.142 0.858 19 C -0.147 4.147 20 C -0.151 4.151 21 C -0.164 4.164 22 C -0.002 4.002 23 H 0.060 0.940 24 O -0.292 6.292 25 H 0.079 0.921 26 H 0.094 0.906 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.049 0.951 30 H 0.096 0.904 31 H 0.072 0.928 32 H 0.064 0.936 33 H 0.090 0.910 34 H 0.046 0.954 35 H 0.083 0.917 36 H 0.125 0.875 37 H 0.076 0.924 38 H 0.112 0.888 39 H 0.078 0.922 40 H 0.105 0.895 41 H 0.100 0.900 42 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -14.941 7.023 5.412 17.374 hybrid contribution 1.265 0.038 0.472 1.351 sum -13.676 7.062 5.884 16.478 Atomic orbital electron populations 1.22187 0.95483 1.00686 1.02122 1.20706 0.93796 0.91998 0.88878 1.22211 1.00014 0.97229 1.01893 1.44161 1.50842 1.36382 1.01207 1.18419 1.04414 1.00972 1.12033 0.95557 1.25885 0.97506 0.97756 0.99754 1.70051 1.28575 1.23186 1.37633 0.86019 0.75649 0.83303 0.78833 1.21035 1.24261 1.17863 1.21648 0.94771 0.96719 0.87075 1.23596 0.96704 0.82094 0.97323 0.90291 1.23395 1.01599 0.98410 0.94871 1.24003 0.95223 0.92999 1.00739 0.85757 1.22376 0.96533 0.95202 1.00556 1.22100 0.94329 0.96266 1.02422 1.22284 0.96185 0.96217 1.01666 1.23650 0.95850 0.96074 0.84628 0.93964 1.88556 1.86963 1.25278 1.28415 0.92101 0.90618 0.94556 0.93238 0.95141 0.90406 0.92833 0.93557 0.90967 0.95449 0.91726 0.87495 0.92433 0.88802 0.92185 0.89539 0.90030 0.93694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.57 7.90 71.98 0.57 -4.00 16 2 C 0.15 5.94 3.32 44.99 0.15 6.08 16 3 C -0.15 -5.14 9.26 71.98 0.67 -4.48 16 4 N -0.60 -28.97 1.97 -678.02 -1.34 -30.31 16 5 C -0.23 -13.57 9.39 84.03 0.79 -12.78 16 6 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 7 C -0.01 -0.83 5.27 84.86 0.45 -0.38 16 8 N -0.95 -62.56 13.97 21.65 0.30 -62.26 16 9 Si 0.93 48.46 25.19 68.60 1.73 50.19 16 10 H -0.28 -14.18 6.65 99.48 0.66 -13.51 16 11 H -0.31 -16.58 7.11 99.48 0.71 -15.87 16 12 H -0.25 -12.44 7.11 99.48 0.71 -11.74 16 13 C 0.12 5.28 3.36 86.38 0.29 5.57 16 14 C 0.06 2.35 2.75 31.01 0.09 2.44 16 15 H 0.08 2.84 5.08 -2.39 -0.01 2.83 16 16 C -0.14 -4.06 5.83 32.21 0.19 -3.87 16 17 C -0.11 -2.92 4.48 -7.89 -0.04 -2.95 16 18 H 0.12 2.62 8.14 -2.39 -0.02 2.60 16 19 C -0.11 -2.47 6.02 31.64 0.19 -2.28 16 20 C -0.11 -2.70 6.80 31.33 0.21 -2.49 16 21 C -0.13 -3.95 6.49 31.24 0.20 -3.75 16 22 C 0.06 2.06 4.33 32.01 0.14 2.20 16 23 H 0.04 1.73 8.14 -2.38 -0.02 1.71 16 24 O -0.37 -17.10 10.04 -148.98 -1.50 -18.59 16 25 H 0.06 1.73 6.48 -2.38 -0.02 1.71 16 26 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 27 H 0.04 1.26 7.82 -2.39 -0.02 1.24 16 28 H 0.05 2.09 7.90 -2.38 -0.02 2.07 16 29 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.05 1.66 6.88 -2.39 -0.02 1.64 16 32 H 0.26 16.07 8.31 -92.71 -0.77 15.30 16 33 H 0.07 2.64 6.70 -2.39 -0.02 2.63 16 34 H 0.03 1.34 3.46 -2.39 -0.01 1.33 16 35 H 0.06 1.85 7.84 -2.39 -0.02 1.84 16 36 H 0.11 2.29 8.08 -2.39 -0.02 2.27 16 37 H 0.06 1.46 6.99 -2.39 -0.02 1.45 16 38 H 0.09 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 41 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 42 H 0.04 1.66 8.08 -2.39 -0.02 1.64 16 Total: -1.00 -73.07 312.21 4.02 -69.05 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.93 Total: 12.62 kcal Atomic # 6 Polarization: -24.59 SS G_CDS: 3.89 Total: -20.70 kcal Atomic # 7 Polarization: -91.53 SS G_CDS: -1.04 Total: -92.57 kcal Atomic # 8 Polarization: -17.10 SS G_CDS: -1.50 Total: -18.59 kcal Atomic # 14 Polarization: 48.46 SS G_CDS: 1.73 Total: 50.19 kcal Total: -73.07 4.02 -69.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720866989.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.435 kcal (2) G-P(sol) polarization free energy of solvation -73.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds