Wall clock time and date at job start Mon Mar 30 2020 06:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47223 * 2 1 4 4 N 1.46503 * 109.47273 * 120.00217 * 2 1 3 5 5 C 1.36931 * 119.99920 * 298.86671 * 4 2 1 6 6 H 1.08006 * 120.00154 * 39.72559 * 5 4 2 7 7 C 1.38812 * 120.00573 * 219.72648 * 5 4 2 8 8 N 1.31611 * 120.00649 * 200.73673 * 7 5 4 9 9 Si 1.86803 * 119.99364 * 20.73190 * 7 5 4 10 10 H 1.48496 * 109.47452 * 264.70067 * 9 7 5 11 11 H 1.48498 * 109.47129 * 24.70933 * 9 7 5 12 12 H 1.48508 * 109.46606 * 144.70249 * 9 7 5 13 13 C 1.46503 * 120.00163 * 118.86516 * 4 2 1 14 14 C 1.52994 * 109.47257 * 269.99895 * 13 4 2 15 15 H 1.09001 * 109.97783 * 305.17444 * 14 13 4 16 16 C 1.56170 * 109.99060 * 183.84974 * 14 13 4 17 17 C 1.52717 * 100.42889 * 218.04743 * 16 14 13 18 18 H 1.09004 * 111.78560 * 283.19059 * 17 16 14 19 19 C 1.51667 * 121.23152 * 148.03418 * 17 16 14 20 20 C 1.55564 * 104.89978 * 221.17960 * 19 17 16 21 21 C 1.54807 * 106.11220 * 7.67472 * 20 19 17 22 22 C 1.50011 * 102.55708 * 22.89044 * 21 20 19 23 23 H 1.09004 * 106.14058 * 65.54010 * 22 21 20 24 24 O 1.38143 * 130.79912 * 195.92670 * 22 21 20 25 25 H 1.09000 * 109.47126 * 305.48135 * 1 2 3 26 26 H 1.08994 * 109.47183 * 65.47981 * 1 2 3 27 27 H 1.09002 * 109.46907 * 185.48299 * 1 2 3 28 28 H 1.09000 * 109.46725 * 239.99779 * 2 1 3 29 29 H 1.08997 * 109.46945 * 184.11144 * 3 2 1 30 30 H 1.08999 * 109.47008 * 304.10774 * 3 2 1 31 31 H 1.09001 * 109.46932 * 64.10876 * 3 2 1 32 32 H 0.96998 * 120.00672 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.47016 * 30.00227 * 13 4 2 34 34 H 1.09002 * 109.46888 * 150.00267 * 13 4 2 35 35 H 1.09002 * 111.22256 * 335.84217 * 16 14 13 36 36 H 1.09001 * 111.22335 * 100.24894 * 16 14 13 37 37 H 1.08997 * 110.35289 * 340.03497 * 19 17 16 38 38 H 1.08998 * 110.35561 * 102.32072 * 19 17 16 39 39 H 1.08997 * 110.15000 * 126.23262 * 20 19 17 40 40 H 1.09007 * 110.14165 * 247.96597 * 20 19 17 41 41 H 1.09000 * 109.88589 * 264.85356 * 21 20 19 42 42 H 1.08997 * 111.36288 * 141.60732 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 1.7068 -0.2095 2.4397 6 1 0.7190 0.1806 2.6360 7 6 2.6605 -0.2230 3.4482 8 7 2.2867 -0.1587 4.7085 9 14 4.4747 -0.3327 3.0166 10 1 4.9133 -1.7501 3.0775 11 1 4.6898 0.1936 1.6447 12 1 5.2632 0.4716 3.9845 13 6 2.8400 -1.8961 1.0619 14 6 1.9351 -3.1294 1.0316 15 1 1.2915 -3.1407 1.9113 16 6 2.8026 -4.4272 0.9870 17 6 1.9662 -5.2865 0.0413 18 1 1.0914 -5.7032 0.5404 19 6 2.6160 -6.2936 -0.8881 20 6 1.8456 -6.1525 -2.2322 21 6 0.9146 -4.9268 -2.0672 22 6 1.5907 -4.1480 -0.9779 23 1 2.5453 -3.8188 -1.3884 24 8 1.1242 -3.1224 -0.1785 25 1 -0.3633 0.5965 0.8368 26 1 -0.3633 0.4265 -0.9349 27 1 -0.3633 -1.0230 0.0982 28 1 1.8933 -0.5139 -0.8900 29 1 3.1275 1.4433 -0.0737 30 1 1.6178 1.9771 -0.8509 31 1 1.7380 1.9346 0.9245 32 1 2.9532 -0.1678 5.4132 33 1 3.4137 -1.8436 0.1365 34 1 3.5224 -1.9669 1.9089 35 1 3.7898 -4.2278 0.5700 36 1 2.8785 -4.8852 1.9733 37 1 3.6702 -6.0548 -1.0285 38 1 2.5045 -7.3026 -0.4913 39 1 2.5449 -5.9733 -3.0488 40 1 1.2627 -7.0528 -2.4271 41 1 -0.0771 -5.2538 -1.7545 42 1 0.8592 -4.3436 -2.9864 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000720866991.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:42 Heat of formation + Delta-G solvation = -17.307791 kcal Electronic energy + Delta-G solvation = -20384.909215 eV Core-core repulsion = 17558.825727 eV Total energy + Delta-G solvation = -2826.083488 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.49770 -36.84662 -35.50575 -32.45510 -31.86088 -30.44670 -27.76041 -27.50493 -26.12919 -24.68878 -23.03809 -21.05957 -20.20889 -19.85670 -19.27822 -16.94165 -16.36225 -15.44078 -15.02023 -14.95023 -14.54267 -14.29525 -13.58164 -13.16546 -12.86074 -12.70252 -12.39967 -12.25804 -12.07190 -11.88841 -11.53866 -11.38933 -11.26618 -11.21932 -10.93596 -10.69614 -10.51081 -10.46416 -10.28277 -10.14927 -10.09670 -9.83554 -9.65886 -9.35962 -8.85183 -8.43667 -6.65449 -5.93821 -3.35587 3.29745 3.47196 3.53877 3.69457 4.55391 4.62785 4.68499 4.87258 4.97193 5.22367 5.27585 5.33598 5.38610 5.47279 5.55928 5.62406 5.75097 5.82606 5.88611 5.99179 6.02182 6.07423 6.11733 6.15247 6.24131 6.28322 6.37717 6.40552 6.46497 6.49185 6.60810 6.71321 6.83587 6.88877 6.89853 7.27830 7.36364 7.67647 8.15126 8.51089 9.09129 9.79088 10.24293 11.22202 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.023504 B = 0.007720 C = 0.006544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.996884 B = 3626.162287 C = 4277.452928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.175 3.825 3 C -0.156 4.156 4 N -0.596 5.596 5 C -0.254 4.254 6 H 0.079 0.921 7 C 0.033 3.967 8 N -0.904 5.904 9 Si 0.872 3.128 10 H -0.288 1.288 11 H -0.268 1.268 12 H -0.302 1.302 13 C 0.132 3.868 14 C 0.068 3.932 15 H 0.095 0.905 16 C -0.140 4.140 17 C -0.151 4.151 18 H 0.085 0.915 19 C -0.109 4.109 20 C -0.118 4.118 21 C -0.101 4.101 22 C 0.068 3.932 23 H 0.029 0.971 24 O -0.342 6.342 25 H 0.050 0.950 26 H 0.032 0.968 27 H 0.056 0.944 28 H 0.048 0.952 29 H 0.039 0.961 30 H 0.036 0.964 31 H 0.064 0.936 32 H 0.261 0.739 33 H 0.040 0.960 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.527 -10.219 -12.445 16.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.069 3.931 3 C -0.214 4.214 4 N -0.318 5.318 5 C -0.383 4.383 6 H 0.097 0.903 7 C -0.166 4.166 8 N -0.546 5.546 9 Si 0.702 3.298 10 H -0.216 1.216 11 H -0.193 1.193 12 H -0.230 1.230 13 C 0.006 3.994 14 C 0.009 3.991 15 H 0.113 0.887 16 C -0.178 4.178 17 C -0.170 4.170 18 H 0.104 0.896 19 C -0.147 4.147 20 C -0.156 4.156 21 C -0.139 4.139 22 C 0.008 3.992 23 H 0.047 0.953 24 O -0.260 6.260 25 H 0.069 0.931 26 H 0.051 0.949 27 H 0.075 0.925 28 H 0.066 0.934 29 H 0.059 0.941 30 H 0.055 0.945 31 H 0.083 0.917 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.095 0.905 37 H 0.084 0.916 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 0.425 -10.017 -12.319 15.883 hybrid contribution 1.326 -0.213 0.090 1.346 sum 1.750 -10.229 -12.229 16.039 Atomic orbital electron populations 1.22083 0.97872 1.01635 0.99237 1.20294 0.92805 0.91177 0.88801 1.22168 0.99932 0.98528 1.00810 1.44119 1.60809 1.24279 1.02583 1.18720 0.96653 1.37756 0.85163 0.90338 1.25526 0.97420 0.98489 0.95191 1.69852 1.33523 1.52454 0.98726 0.86990 0.87804 0.76682 0.78301 1.21598 1.19271 1.23042 1.21533 0.92554 0.86308 0.99017 1.24599 0.92890 0.94579 0.87009 0.88713 1.22768 0.98828 0.96095 1.00156 1.23167 1.00026 0.96821 0.96961 0.89631 1.21668 0.99428 0.98783 0.94779 1.22556 0.98023 0.97474 0.97525 1.21370 0.99408 0.95591 0.97533 1.21777 0.96301 0.87867 0.93264 0.95284 1.87924 1.58544 1.49295 1.30267 0.93063 0.94881 0.92479 0.93356 0.94135 0.94526 0.91732 0.92873 0.94185 0.91942 0.91000 0.90483 0.91579 0.91731 0.91641 0.91285 0.91168 0.90993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.97 9.08 37.16 0.34 -2.63 16 2 C 0.18 3.69 3.06 -67.93 -0.21 3.49 16 3 C -0.16 -3.12 9.21 37.16 0.34 -2.78 16 4 N -0.60 -14.20 1.96 -165.66 -0.33 -14.52 16 5 C -0.25 -6.98 8.53 -15.06 -0.13 -7.11 16 6 H 0.08 2.36 7.21 -52.48 -0.38 1.98 16 7 C 0.03 0.96 5.32 -17.43 -0.09 0.86 16 8 N -0.90 -27.41 13.97 55.49 0.78 -26.64 16 9 Si 0.87 22.11 25.04 -169.99 -4.26 17.85 16 10 H -0.29 -7.03 6.69 56.52 0.38 -6.65 16 11 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.30 -7.84 7.11 56.52 0.40 -7.44 16 13 C 0.13 2.89 4.08 -4.04 -0.02 2.87 16 14 C 0.07 1.32 3.75 -25.03 -0.09 1.23 16 15 H 0.09 2.07 8.14 -51.93 -0.42 1.65 16 16 C -0.14 -2.21 6.17 -25.18 -0.16 -2.36 16 17 C -0.15 -2.08 3.43 -89.07 -0.31 -2.38 16 18 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 19 C -0.11 -1.19 6.51 -26.04 -0.17 -1.36 16 20 C -0.12 -1.16 6.86 -24.42 -0.17 -1.33 16 21 C -0.10 -1.21 6.65 -27.26 -0.18 -1.39 16 22 C 0.07 1.03 3.53 -25.85 -0.09 0.94 16 23 H 0.03 0.46 7.70 -51.93 -0.40 0.06 16 24 O -0.34 -6.47 10.19 -26.98 -0.27 -6.74 16 25 H 0.05 1.08 7.29 -51.93 -0.38 0.70 16 26 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.06 1.19 7.58 -51.93 -0.39 0.79 16 28 H 0.05 0.98 7.79 -51.93 -0.40 0.57 16 29 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.06 1.41 7.50 -51.93 -0.39 1.02 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.04 0.82 7.91 -51.93 -0.41 0.41 16 34 H 0.06 1.47 3.43 -51.93 -0.18 1.29 16 35 H 0.07 1.09 7.92 -51.93 -0.41 0.67 16 36 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.07 0.71 8.13 -51.93 -0.42 0.28 16 38 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.07 0.58 8.14 -51.92 -0.42 0.15 16 41 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 LS Contribution 318.57 15.07 4.80 4.80 Total: -1.00 -29.63 318.57 -7.79 -37.42 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -7.57 Total: -0.22 kcal Atomic # 6 Polarization: -11.02 SS G_CDS: -0.93 Total: -11.95 kcal Atomic # 7 Polarization: -41.61 SS G_CDS: 0.45 Total: -41.16 kcal Atomic # 8 Polarization: -6.47 SS G_CDS: -0.27 Total: -6.74 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -4.26 Total: 17.85 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.63 -7.79 -37.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720866991.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.109 kcal (2) G-P(sol) polarization free energy of solvation -29.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.417 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds