Wall clock time and date at job start Mon Mar 30 2020 06:03:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52998 * 109.47223 * 2 1 4 4 N 1.46503 * 109.47273 * 120.00217 * 2 1 3 5 5 C 1.36931 * 119.99920 * 298.86671 * 4 2 1 6 6 H 1.08006 * 120.00154 * 39.72559 * 5 4 2 7 7 C 1.38812 * 120.00573 * 219.72648 * 5 4 2 8 8 N 1.31611 * 120.00649 * 200.73673 * 7 5 4 9 9 Si 1.86803 * 119.99364 * 20.73190 * 7 5 4 10 10 H 1.48496 * 109.47452 * 264.70067 * 9 7 5 11 11 H 1.48498 * 109.47129 * 24.70933 * 9 7 5 12 12 H 1.48508 * 109.46606 * 144.70249 * 9 7 5 13 13 C 1.46503 * 120.00163 * 118.86516 * 4 2 1 14 14 C 1.52994 * 109.47257 * 269.99895 * 13 4 2 15 15 H 1.09001 * 109.97783 * 305.17444 * 14 13 4 16 16 C 1.56170 * 109.99060 * 183.84974 * 14 13 4 17 17 C 1.52717 * 100.42889 * 218.04743 * 16 14 13 18 18 H 1.09004 * 111.78560 * 283.19059 * 17 16 14 19 19 C 1.51667 * 121.23152 * 148.03418 * 17 16 14 20 20 C 1.55564 * 104.89978 * 221.17960 * 19 17 16 21 21 C 1.54807 * 106.11220 * 7.67472 * 20 19 17 22 22 C 1.50011 * 102.55708 * 22.89044 * 21 20 19 23 23 H 1.09004 * 106.14058 * 65.54010 * 22 21 20 24 24 O 1.38143 * 130.79912 * 195.92670 * 22 21 20 25 25 H 1.09000 * 109.47126 * 305.48135 * 1 2 3 26 26 H 1.08994 * 109.47183 * 65.47981 * 1 2 3 27 27 H 1.09002 * 109.46907 * 185.48299 * 1 2 3 28 28 H 1.09000 * 109.46725 * 239.99779 * 2 1 3 29 29 H 1.08997 * 109.46945 * 184.11144 * 3 2 1 30 30 H 1.08999 * 109.47008 * 304.10774 * 3 2 1 31 31 H 1.09001 * 109.46932 * 64.10876 * 3 2 1 32 32 H 0.96998 * 120.00672 * 180.02562 * 8 7 5 33 33 H 1.08999 * 109.47016 * 30.00227 * 13 4 2 34 34 H 1.09002 * 109.46888 * 150.00267 * 13 4 2 35 35 H 1.09002 * 111.22256 * 335.84217 * 16 14 13 36 36 H 1.09001 * 111.22335 * 100.24894 * 16 14 13 37 37 H 1.08997 * 110.35289 * 340.03497 * 19 17 16 38 38 H 1.08998 * 110.35561 * 102.32072 * 19 17 16 39 39 H 1.08997 * 110.15000 * 126.23262 * 20 19 17 40 40 H 1.09007 * 110.14165 * 247.96597 * 20 19 17 41 41 H 1.09000 * 109.88589 * 264.85356 * 21 20 19 42 42 H 1.08997 * 111.36288 * 141.60732 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 1.7068 -0.2095 2.4397 6 1 0.7190 0.1806 2.6360 7 6 2.6605 -0.2230 3.4482 8 7 2.2867 -0.1587 4.7085 9 14 4.4747 -0.3327 3.0166 10 1 4.9133 -1.7501 3.0775 11 1 4.6898 0.1936 1.6447 12 1 5.2632 0.4716 3.9845 13 6 2.8400 -1.8961 1.0619 14 6 1.9351 -3.1294 1.0316 15 1 1.2915 -3.1407 1.9113 16 6 2.8026 -4.4272 0.9870 17 6 1.9662 -5.2865 0.0413 18 1 1.0914 -5.7032 0.5404 19 6 2.6160 -6.2936 -0.8881 20 6 1.8456 -6.1525 -2.2322 21 6 0.9146 -4.9268 -2.0672 22 6 1.5907 -4.1480 -0.9779 23 1 2.5453 -3.8188 -1.3884 24 8 1.1242 -3.1224 -0.1785 25 1 -0.3633 0.5965 0.8368 26 1 -0.3633 0.4265 -0.9349 27 1 -0.3633 -1.0230 0.0982 28 1 1.8933 -0.5139 -0.8900 29 1 3.1275 1.4433 -0.0737 30 1 1.6178 1.9771 -0.8509 31 1 1.7380 1.9346 0.9245 32 1 2.9532 -0.1678 5.4132 33 1 3.4137 -1.8436 0.1365 34 1 3.5224 -1.9669 1.9089 35 1 3.7898 -4.2278 0.5700 36 1 2.8785 -4.8852 1.9733 37 1 3.6702 -6.0548 -1.0285 38 1 2.5045 -7.3026 -0.4913 39 1 2.5449 -5.9733 -3.0488 40 1 1.2627 -7.0528 -2.4271 41 1 -0.0771 -5.2538 -1.7545 42 1 0.8592 -4.3436 -2.9864 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000720866991.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:03:42 Heat of formation + Delta-G solvation = -34.273721 kcal Electronic energy + Delta-G solvation = -20385.644913 eV Core-core repulsion = 17558.825727 eV Total energy + Delta-G solvation = -2826.819186 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.73860 -38.53169 -36.77201 -34.32997 -33.51284 -32.03381 -29.18842 -28.63007 -27.77610 -26.37093 -24.73345 -22.36720 -21.46664 -21.16870 -20.84552 -18.36977 -18.21777 -16.98230 -16.77666 -16.32870 -15.88383 -15.55197 -15.18719 -14.85084 -14.49357 -14.16035 -13.91889 -13.82798 -13.44781 -13.19774 -13.08172 -12.98448 -12.68971 -12.59240 -12.45117 -12.15719 -12.06845 -11.92307 -11.74795 -11.58619 -11.56845 -11.34630 -11.20357 -11.04728 -10.60184 -10.20333 -8.62895 -8.15155 -5.54047 1.26780 1.39838 1.51135 2.43116 2.46831 3.07569 3.32447 3.58509 3.71040 3.77958 4.09384 4.16194 4.23838 4.30296 4.37335 4.44677 4.49506 4.54434 4.56042 4.66816 4.71972 4.74015 4.84507 4.93466 4.95008 4.98700 5.07390 5.11004 5.13658 5.17207 5.19111 5.20547 5.35142 5.37983 5.48827 5.57875 5.68406 6.02082 6.27132 6.34626 7.05979 7.69712 8.15130 9.05088 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.023504 B = 0.007720 C = 0.006544 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.996884 B = 3626.162287 C = 4277.452928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.169 3.831 3 C -0.148 4.148 4 N -0.607 5.607 5 C -0.235 4.235 6 H 0.039 0.961 7 C -0.021 4.021 8 N -0.952 5.952 9 Si 0.934 3.066 10 H -0.272 1.272 11 H -0.259 1.259 12 H -0.311 1.311 13 C 0.129 3.871 14 C 0.072 3.928 15 H 0.057 0.943 16 C -0.135 4.135 17 C -0.142 4.142 18 H 0.079 0.921 19 C -0.106 4.106 20 C -0.110 4.110 21 C -0.100 4.100 22 C 0.051 3.949 23 H 0.027 0.973 24 O -0.361 6.361 25 H 0.028 0.972 26 H 0.066 0.934 27 H 0.041 0.959 28 H 0.065 0.935 29 H 0.037 0.963 30 H 0.072 0.928 31 H 0.036 0.964 32 H 0.261 0.739 33 H 0.058 0.942 34 H 0.047 0.953 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.071 0.929 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.088 0.912 41 H 0.069 0.931 42 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.746 -11.864 -15.381 19.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.063 3.937 3 C -0.207 4.207 4 N -0.329 5.329 5 C -0.365 4.365 6 H 0.056 0.944 7 C -0.216 4.216 8 N -0.597 5.597 9 Si 0.763 3.237 10 H -0.199 1.199 11 H -0.184 1.184 12 H -0.239 1.239 13 C 0.003 3.997 14 C 0.013 3.987 15 H 0.076 0.924 16 C -0.173 4.173 17 C -0.161 4.161 18 H 0.098 0.902 19 C -0.143 4.143 20 C -0.147 4.147 21 C -0.137 4.137 22 C -0.009 4.009 23 H 0.045 0.955 24 O -0.280 6.280 25 H 0.047 0.953 26 H 0.085 0.915 27 H 0.060 0.940 28 H 0.083 0.917 29 H 0.056 0.944 30 H 0.090 0.910 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.064 0.936 35 H 0.102 0.898 36 H 0.098 0.902 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.098 0.902 40 H 0.107 0.893 41 H 0.087 0.913 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 1.645 -11.684 -15.304 19.325 hybrid contribution 0.814 0.310 0.940 1.281 sum 2.459 -11.374 -14.364 18.486 Atomic orbital electron populations 1.21953 0.97205 1.00500 1.00039 1.20502 0.93316 0.91760 0.88096 1.22085 0.99827 0.97839 1.00942 1.44254 1.61088 1.25485 1.02098 1.18482 0.94939 1.36288 0.86801 0.94370 1.26062 1.01435 0.99265 0.94877 1.69980 1.34714 1.55220 0.99802 0.85974 0.82496 0.77320 0.77904 1.19877 1.18355 1.23939 1.21588 0.92628 0.86403 0.99037 1.24250 0.92368 0.95614 0.86450 0.92447 1.22725 0.98888 0.94516 1.01211 1.23143 0.99622 0.97042 0.96317 0.90244 1.21701 0.99604 0.98553 0.94458 1.22552 0.97886 0.97096 0.97211 1.21462 0.99736 0.95992 0.96521 1.22160 0.96930 0.87611 0.94166 0.95500 1.87882 1.58683 1.51078 1.30331 0.95317 0.91489 0.93977 0.91682 0.94419 0.90964 0.94466 0.93031 0.92338 0.93567 0.89820 0.90156 0.91001 0.90118 0.90230 0.89320 0.91262 0.90148 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.43 9.08 71.98 0.65 -4.78 16 2 C 0.17 6.92 3.06 44.99 0.14 7.06 16 3 C -0.15 -5.74 9.21 71.98 0.66 -5.07 16 4 N -0.61 -29.04 1.96 -678.03 -1.33 -30.37 16 5 C -0.23 -13.38 8.53 84.03 0.72 -12.66 16 6 H 0.04 2.45 7.21 -2.91 -0.02 2.43 16 7 C -0.02 -1.22 5.32 84.86 0.45 -0.77 16 8 N -0.95 -60.02 13.97 21.65 0.30 -59.72 16 9 Si 0.93 46.28 25.04 68.60 1.72 48.00 16 10 H -0.27 -12.63 6.69 99.48 0.67 -11.97 16 11 H -0.26 -12.34 7.11 99.48 0.71 -11.64 16 12 H -0.31 -15.71 7.11 99.48 0.71 -15.00 16 13 C 0.13 5.55 4.08 86.38 0.35 5.90 16 14 C 0.07 2.81 3.75 31.69 0.12 2.93 16 15 H 0.06 2.63 8.14 -2.39 -0.02 2.61 16 16 C -0.14 -4.07 6.17 31.60 0.19 -3.87 16 17 C -0.14 -3.62 3.43 -9.79 -0.03 -3.65 16 18 H 0.08 2.11 8.14 -2.38 -0.02 2.09 16 19 C -0.11 -1.91 6.51 31.04 0.20 -1.71 16 20 C -0.11 -1.70 6.86 32.09 0.22 -1.48 16 21 C -0.10 -2.08 6.65 30.25 0.20 -1.88 16 22 C 0.05 1.43 3.53 31.17 0.11 1.54 16 23 H 0.03 0.78 7.70 -2.39 -0.02 0.76 16 24 O -0.36 -13.44 10.19 -119.46 -1.22 -14.66 16 25 H 0.03 1.22 7.29 -2.39 -0.02 1.20 16 26 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 27 H 0.04 1.75 7.58 -2.39 -0.02 1.74 16 28 H 0.06 2.47 7.79 -2.39 -0.02 2.46 16 29 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 31 H 0.04 1.62 7.50 -2.39 -0.02 1.60 16 32 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 33 H 0.06 2.28 7.91 -2.39 -0.02 2.26 16 34 H 0.05 2.14 3.43 -2.39 -0.01 2.13 16 35 H 0.08 2.32 7.92 -2.39 -0.02 2.30 16 36 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.07 1.25 8.13 -2.39 -0.02 1.23 16 38 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 40 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 41 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -66.16 318.57 4.38 -61.78 By element: Atomic # 1 Polarization: 12.49 SS G_CDS: 0.92 Total: 13.41 kcal Atomic # 6 Polarization: -22.42 SS G_CDS: 3.99 Total: -18.43 kcal Atomic # 7 Polarization: -89.06 SS G_CDS: -1.03 Total: -90.09 kcal Atomic # 8 Polarization: -13.44 SS G_CDS: -1.22 Total: -14.66 kcal Atomic # 14 Polarization: 46.28 SS G_CDS: 1.72 Total: 48.00 kcal Total: -66.16 4.38 -61.78 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000720866991.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.504 kcal (2) G-P(sol) polarization free energy of solvation -66.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.652 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.274 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds