Wall clock time and date at job start Mon Mar 30 2020 07:33:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.48723 * 2 1 4 4 C 1.53100 * 109.48170 * 120.02620 * 2 1 3 5 5 C 1.53175 * 109.16393 * 177.60096 * 4 2 1 6 6 H 1.09006 * 109.54599 * 62.97412 * 5 4 2 7 7 N 1.46896 * 109.54025 * 183.14898 * 5 4 2 8 8 C 1.46900 * 111.00179 * 66.04586 * 7 5 4 9 9 C 1.46900 * 111.00064 * 189.99800 * 7 5 4 10 10 C 1.53001 * 109.47464 * 163.86035 * 9 7 5 11 11 C 1.50695 * 115.55138 * 305.61486 * 10 9 7 12 12 H 1.08000 * 120.00211 * 92.87715 * 11 10 9 13 13 C 1.37877 * 119.99962 * 272.87561 * 11 10 9 14 14 N 1.31513 * 119.99864 * 6.03961 * 13 11 10 15 15 Si 1.86798 * 120.00146 * 186.31257 * 13 11 10 16 16 H 1.48508 * 109.47307 * 179.72417 * 15 13 11 17 17 H 1.48496 * 109.47396 * 299.72494 * 15 13 11 18 18 H 1.48498 * 109.47069 * 59.72598 * 15 13 11 19 19 C 1.53003 * 117.49345 * 91.27956 * 10 9 7 20 20 C 1.53003 * 117.49854 * 159.93985 * 10 9 7 21 21 C 1.53179 * 109.03613 * 303.01775 * 5 4 2 22 22 C 1.53090 * 109.16617 * 56.98156 * 21 5 4 23 23 O 1.42906 * 109.41183 * 302.39265 * 22 21 5 24 24 H 1.09004 * 109.46639 * 299.97698 * 1 2 3 25 25 H 1.08996 * 109.47101 * 59.97475 * 1 2 3 26 26 H 1.08994 * 109.47286 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.52500 * 57.68929 * 4 2 1 28 28 H 1.08999 * 109.51643 * 297.50421 * 4 2 1 29 29 H 1.08997 * 109.47555 * 191.23611 * 8 7 5 30 30 H 1.09000 * 109.47197 * 311.24172 * 8 7 5 31 31 H 1.09003 * 109.47079 * 71.23985 * 8 7 5 32 32 H 1.09005 * 109.47069 * 43.86425 * 9 7 5 33 33 H 1.09002 * 109.47488 * 283.86395 * 9 7 5 34 34 H 0.97006 * 120.00418 * 174.98834 * 14 13 11 35 35 H 1.09000 * 117.49734 * 215.00336 * 19 10 9 36 36 H 1.09000 * 117.50225 * 0.02611 * 19 10 9 37 37 H 1.08999 * 117.49918 * 359.97438 * 20 10 9 38 38 H 1.08994 * 117.49650 * 144.98296 * 20 10 9 39 39 H 1.09002 * 109.52163 * 176.89136 * 21 5 4 40 40 H 1.09003 * 109.51997 * 297.07403 * 21 5 4 41 41 H 1.09002 * 109.48002 * 182.41035 * 22 21 5 42 42 H 1.09003 * 109.47771 * 62.37319 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0406 -0.7222 1.2496 5 6 3.5711 -0.7706 1.2123 6 1 3.9689 0.2438 1.2426 7 7 4.0671 -1.5276 2.3694 8 6 3.6714 -2.9397 2.2836 9 6 5.5244 -1.3963 2.4990 10 6 5.9541 -1.8402 3.8988 11 6 5.2563 -1.1502 5.0423 12 1 4.3695 -1.5877 5.4767 13 6 5.7499 0.0395 5.5341 14 7 6.7570 0.6328 4.9314 15 14 4.9931 0.8048 7.0608 16 1 5.7032 2.0681 7.3853 17 1 3.5582 1.0939 6.8104 18 1 5.1163 -0.1390 8.2007 19 6 6.3360 -3.3098 4.0875 20 6 7.4204 -2.2294 4.0974 21 6 4.0178 -1.4598 -0.0807 22 6 3.4310 -0.7092 -1.2789 23 8 2.0068 -0.6743 -1.1663 24 1 -0.3633 0.5135 0.8902 25 1 -0.3633 0.5142 -0.8897 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6444 -1.7375 1.2711 28 1 1.7147 -0.1842 2.1398 29 1 3.8734 -3.4322 3.2347 30 1 2.6068 -3.0058 2.0591 31 1 4.2405 -3.4291 1.4931 32 1 5.8107 -0.3560 2.3441 33 1 6.0136 -2.0227 1.7530 34 1 7.0573 1.5045 5.2329 35 1 6.0825 -3.7774 5.0389 36 1 6.2815 -3.9601 3.2145 37 1 8.0789 -2.1696 3.2308 38 1 7.8804 -1.9861 5.0551 39 1 5.1061 -1.4494 -0.1417 40 1 3.6616 -2.4900 -0.0861 41 1 3.7103 -1.2202 -2.2003 42 1 3.8194 0.3091 -1.2956 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721484394.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:03 Heat of formation + Delta-G solvation = -21.686270 kcal Electronic energy + Delta-G solvation = -20032.251815 eV Core-core repulsion = 17205.978462 eV Total energy + Delta-G solvation = -2826.273353 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -39.68310 -37.38338 -35.38993 -32.70994 -31.79697 -31.05608 -27.66720 -26.93107 -25.37834 -24.15148 -22.97760 -21.22124 -20.98999 -19.32210 -18.85558 -16.26706 -15.98358 -15.82613 -14.97528 -14.71779 -14.46823 -14.20140 -13.94066 -13.43023 -13.13488 -12.95484 -12.55920 -12.30633 -12.13768 -11.80728 -11.40693 -11.32365 -11.16004 -10.85613 -10.83425 -10.80555 -10.61846 -10.53365 -10.37739 -10.08210 -9.98569 -9.50023 -9.29253 -8.72924 -8.30316 -7.98139 -7.34822 -5.89170 -3.90526 3.38413 3.42354 3.45864 3.85293 4.48160 4.54800 4.98680 4.99112 5.08396 5.26818 5.35138 5.38249 5.38897 5.51398 5.57651 5.65637 5.71934 5.83976 5.87034 6.01125 6.04486 6.06165 6.15276 6.20713 6.22691 6.35184 6.43947 6.47615 6.55207 6.65592 6.70129 6.78431 6.98018 7.16194 7.34119 7.52914 7.58440 7.92116 8.03417 8.06272 8.61854 9.07227 9.71436 11.20135 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.022087 B = 0.006617 C = 0.005720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.410740 B = 4230.288354 C = 4893.670503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.086 3.914 3 H 0.056 0.944 4 C -0.139 4.139 5 C 0.084 3.916 6 H 0.078 0.922 7 N -0.506 5.506 8 C 0.028 3.972 9 C 0.106 3.894 10 C 0.056 3.944 11 C -0.462 4.462 12 H 0.058 0.942 13 C 0.068 3.932 14 N -0.889 5.889 15 Si 0.887 3.113 16 H -0.290 1.290 17 H -0.278 1.278 18 H -0.279 1.279 19 C -0.217 4.217 20 C -0.157 4.157 21 C -0.190 4.190 22 C 0.068 3.932 23 O -0.385 6.385 24 H 0.071 0.929 25 H 0.058 0.942 26 H 0.061 0.939 27 H 0.070 0.930 28 H 0.081 0.919 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.012 0.988 32 H 0.072 0.928 33 H 0.000 1.000 34 H 0.257 0.743 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.081 0.919 39 H 0.070 0.930 40 H 0.072 0.928 41 H 0.087 0.913 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.386 -2.191 -10.165 12.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.028 3.972 3 H 0.074 0.926 4 C -0.177 4.177 5 C -0.025 4.025 6 H 0.097 0.903 7 N -0.227 5.227 8 C -0.120 4.120 9 C -0.021 4.021 10 C 0.055 3.945 11 C -0.500 4.500 12 H 0.076 0.924 13 C -0.134 4.134 14 N -0.528 5.528 15 Si 0.715 3.285 16 H -0.216 1.216 17 H -0.203 1.203 18 H -0.205 1.205 19 C -0.254 4.254 20 C -0.195 4.195 21 C -0.229 4.229 22 C -0.009 4.009 23 O -0.305 6.305 24 H 0.090 0.910 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.089 0.911 28 H 0.100 0.900 29 H 0.091 0.909 30 H 0.073 0.927 31 H 0.031 0.969 32 H 0.091 0.909 33 H 0.018 0.982 34 H 0.067 0.933 35 H 0.093 0.907 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.100 0.900 39 H 0.089 0.911 40 H 0.090 0.910 41 H 0.105 0.895 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -7.556 -1.934 -9.789 12.516 hybrid contribution 0.401 0.237 0.273 0.539 sum -7.155 -1.697 -9.517 12.027 Atomic orbital electron populations 1.21741 0.93328 1.02711 1.02141 1.22122 0.94768 0.95119 0.85226 0.92579 1.22282 0.95638 1.01798 0.97950 1.21771 0.94590 0.98239 0.87914 0.90348 1.61972 1.14226 1.09541 1.36933 1.22404 0.99050 0.89750 1.00784 1.21686 0.84505 1.00177 0.95749 1.18792 0.93030 0.89778 0.92914 1.20215 1.10262 1.06274 1.13279 0.92416 1.24913 0.94622 0.97169 0.96662 1.69969 1.26627 1.14943 1.41227 0.86752 0.79324 0.78373 0.84038 1.21618 1.20338 1.20512 1.23059 1.08451 0.93941 0.99977 1.22502 0.93194 1.03190 1.00661 1.22946 1.01414 1.01390 0.97191 1.22461 0.80947 0.99417 0.98086 1.87867 1.21053 1.78195 1.43367 0.91021 0.92243 0.91987 0.91121 0.90044 0.90898 0.92724 0.96910 0.90942 0.98185 0.93330 0.90681 0.92252 0.92326 0.90027 0.91100 0.90952 0.89465 0.93396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.57 37.16 0.36 -1.18 16 2 C 0.09 1.12 3.26 -26.68 -0.09 1.03 16 3 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 4 C -0.14 -2.05 4.72 -26.59 -0.13 -2.17 16 5 C 0.08 1.41 2.27 -67.53 -0.15 1.25 16 6 H 0.08 1.40 7.86 -51.93 -0.41 1.00 16 7 N -0.51 -9.96 4.35 -234.66 -1.02 -10.98 16 8 C 0.03 0.50 8.10 60.06 0.49 0.99 16 9 C 0.11 2.34 4.32 -3.82 -0.02 2.32 16 10 C 0.06 1.35 1.18 -155.66 -0.18 1.17 16 11 C -0.46 -12.52 8.52 -34.44 -0.29 -12.82 16 12 H 0.06 1.60 7.82 -52.49 -0.41 1.19 16 13 C 0.07 1.86 5.38 -17.82 -0.10 1.76 16 14 N -0.89 -25.22 12.82 55.43 0.71 -24.51 16 15 Si 0.89 21.46 29.55 -169.99 -5.02 16.43 16 16 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 19 C -0.22 -4.75 8.65 -26.69 -0.23 -4.98 16 20 C -0.16 -3.73 9.33 -26.69 -0.25 -3.98 16 21 C -0.19 -2.77 4.73 -26.59 -0.13 -2.90 16 22 C 0.07 0.88 6.84 37.20 0.25 1.14 16 23 O -0.39 -5.45 10.41 -35.23 -0.37 -5.81 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 1.05 6.24 -51.93 -0.32 0.72 16 28 H 0.08 1.25 8.14 -51.93 -0.42 0.83 16 29 H 0.07 1.38 6.83 -51.93 -0.35 1.03 16 30 H 0.05 0.86 6.01 -51.93 -0.31 0.55 16 31 H 0.01 0.21 6.68 -51.93 -0.35 -0.14 16 32 H 0.07 1.76 7.81 -51.93 -0.41 1.36 16 33 H 0.00 0.00 7.22 -51.93 -0.37 -0.37 16 34 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 35 H 0.07 1.65 8.14 -51.93 -0.42 1.22 16 36 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 37 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 38 H 0.08 2.08 8.14 -51.93 -0.42 1.65 16 39 H 0.07 1.06 7.25 -51.93 -0.38 0.68 16 40 H 0.07 1.07 6.41 -51.93 -0.33 0.74 16 41 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 323.33 15.07 4.87 4.87 Total: -1.00 -28.33 323.33 -8.72 -37.05 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -7.43 Total: 1.32 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: -0.46 Total: -18.38 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: -0.31 Total: -35.49 kcal Atomic # 8 Polarization: -5.45 SS G_CDS: -0.37 Total: -5.81 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.43 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -28.33 -8.72 -37.05 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721484394.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.363 kcal (2) G-P(sol) polarization free energy of solvation -28.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.964 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.049 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.75 seconds