Wall clock time and date at job start Mon Mar 30 2020 07:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.48723 * 2 1 4 4 C 1.53100 * 109.48170 * 120.02620 * 2 1 3 5 5 C 1.53175 * 109.16393 * 177.60096 * 4 2 1 6 6 H 1.09006 * 109.54599 * 62.97412 * 5 4 2 7 7 N 1.46896 * 109.54025 * 183.14898 * 5 4 2 8 8 C 1.46900 * 111.00179 * 66.04586 * 7 5 4 9 9 C 1.46900 * 111.00064 * 189.99800 * 7 5 4 10 10 C 1.53001 * 109.47464 * 163.86035 * 9 7 5 11 11 C 1.50695 * 115.55138 * 305.61486 * 10 9 7 12 12 H 1.08000 * 120.00211 * 92.87715 * 11 10 9 13 13 C 1.37877 * 119.99962 * 272.87561 * 11 10 9 14 14 N 1.31513 * 119.99864 * 6.03961 * 13 11 10 15 15 Si 1.86798 * 120.00146 * 186.31257 * 13 11 10 16 16 H 1.48508 * 109.47307 * 179.72417 * 15 13 11 17 17 H 1.48496 * 109.47396 * 299.72494 * 15 13 11 18 18 H 1.48498 * 109.47069 * 59.72598 * 15 13 11 19 19 C 1.53003 * 117.49345 * 91.27956 * 10 9 7 20 20 C 1.53003 * 117.49854 * 159.93985 * 10 9 7 21 21 C 1.53179 * 109.03613 * 303.01775 * 5 4 2 22 22 C 1.53090 * 109.16617 * 56.98156 * 21 5 4 23 23 O 1.42906 * 109.41183 * 302.39265 * 22 21 5 24 24 H 1.09004 * 109.46639 * 299.97698 * 1 2 3 25 25 H 1.08996 * 109.47101 * 59.97475 * 1 2 3 26 26 H 1.08994 * 109.47286 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.52500 * 57.68929 * 4 2 1 28 28 H 1.08999 * 109.51643 * 297.50421 * 4 2 1 29 29 H 1.08997 * 109.47555 * 191.23611 * 8 7 5 30 30 H 1.09000 * 109.47197 * 311.24172 * 8 7 5 31 31 H 1.09003 * 109.47079 * 71.23985 * 8 7 5 32 32 H 1.09005 * 109.47069 * 43.86425 * 9 7 5 33 33 H 1.09002 * 109.47488 * 283.86395 * 9 7 5 34 34 H 0.97006 * 120.00418 * 174.98834 * 14 13 11 35 35 H 1.09000 * 117.49734 * 215.00336 * 19 10 9 36 36 H 1.09000 * 117.50225 * 0.02611 * 19 10 9 37 37 H 1.08999 * 117.49918 * 359.97438 * 20 10 9 38 38 H 1.08994 * 117.49650 * 144.98296 * 20 10 9 39 39 H 1.09002 * 109.52163 * 176.89136 * 21 5 4 40 40 H 1.09003 * 109.51997 * 297.07403 * 21 5 4 41 41 H 1.09002 * 109.48002 * 182.41035 * 22 21 5 42 42 H 1.09003 * 109.47771 * 62.37319 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0275 0.0000 4 6 2.0406 -0.7222 1.2496 5 6 3.5711 -0.7706 1.2123 6 1 3.9689 0.2438 1.2426 7 7 4.0671 -1.5276 2.3694 8 6 3.6714 -2.9397 2.2836 9 6 5.5244 -1.3963 2.4990 10 6 5.9541 -1.8402 3.8988 11 6 5.2563 -1.1502 5.0423 12 1 4.3695 -1.5877 5.4767 13 6 5.7499 0.0395 5.5341 14 7 6.7570 0.6328 4.9314 15 14 4.9931 0.8048 7.0608 16 1 5.7032 2.0681 7.3853 17 1 3.5582 1.0939 6.8104 18 1 5.1163 -0.1390 8.2007 19 6 6.3360 -3.3098 4.0875 20 6 7.4204 -2.2294 4.0974 21 6 4.0178 -1.4598 -0.0807 22 6 3.4310 -0.7092 -1.2789 23 8 2.0068 -0.6743 -1.1663 24 1 -0.3633 0.5135 0.8902 25 1 -0.3633 0.5142 -0.8897 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6444 -1.7375 1.2711 28 1 1.7147 -0.1842 2.1398 29 1 3.8734 -3.4322 3.2347 30 1 2.6068 -3.0058 2.0591 31 1 4.2405 -3.4291 1.4931 32 1 5.8107 -0.3560 2.3441 33 1 6.0136 -2.0227 1.7530 34 1 7.0573 1.5045 5.2329 35 1 6.0825 -3.7774 5.0389 36 1 6.2815 -3.9601 3.2145 37 1 8.0789 -2.1696 3.2308 38 1 7.8804 -1.9861 5.0551 39 1 5.1061 -1.4494 -0.1417 40 1 3.6616 -2.4900 -0.0861 41 1 3.7103 -1.2202 -2.2003 42 1 3.8194 0.3091 -1.2956 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721484394.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:01 Heat of formation + Delta-G solvation = -38.107156 kcal Electronic energy + Delta-G solvation = -20032.963878 eV Core-core repulsion = 17205.978462 eV Total energy + Delta-G solvation = -2826.985416 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.90333 -38.96384 -36.96641 -33.88778 -33.72256 -32.38159 -28.86607 -28.40322 -27.37641 -25.57553 -24.15439 -22.87872 -22.35809 -20.87174 -20.50757 -17.92535 -17.30750 -17.04329 -16.57981 -16.37689 -15.90866 -15.63764 -15.46345 -14.79434 -14.59017 -14.46102 -14.02076 -13.47702 -13.23974 -13.13870 -13.03506 -12.83199 -12.77125 -12.62000 -12.51794 -12.30378 -12.03027 -11.97464 -11.87499 -11.78079 -11.35879 -11.12268 -10.72495 -10.50464 -10.29279 -9.86747 -8.84723 -7.99380 -6.05314 1.44224 1.44735 1.51565 2.49320 2.83987 3.08897 3.28823 3.61019 3.79051 3.86220 4.00281 4.18076 4.23610 4.29479 4.38253 4.43321 4.51792 4.57101 4.62772 4.68684 4.71706 4.78661 4.80497 4.85309 4.90426 4.98853 5.03276 5.05102 5.08425 5.19111 5.25941 5.29490 5.32005 5.37503 5.65446 5.74974 5.89450 6.29542 6.37391 6.49251 6.62303 6.96731 7.58752 9.08889 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.022087 B = 0.006617 C = 0.005720 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1267.410740 B = 4230.288354 C = 4893.670503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.086 3.914 3 H 0.057 0.943 4 C -0.131 4.131 5 C 0.082 3.918 6 H 0.058 0.942 7 N -0.527 5.527 8 C 0.034 3.966 9 C 0.124 3.876 10 C 0.031 3.969 11 C -0.471 4.471 12 H 0.046 0.954 13 C 0.023 3.977 14 N -0.915 5.915 15 Si 0.941 3.059 16 H -0.289 1.289 17 H -0.275 1.275 18 H -0.276 1.276 19 C -0.189 4.189 20 C -0.165 4.165 21 C -0.180 4.180 22 C 0.069 3.931 23 O -0.393 6.393 24 H 0.081 0.919 25 H 0.069 0.931 26 H 0.062 0.938 27 H 0.073 0.927 28 H 0.071 0.929 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.024 0.976 32 H 0.040 0.960 33 H 0.012 0.988 34 H 0.255 0.745 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.069 0.931 38 H 0.056 0.944 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.110 0.890 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.628 -2.862 -11.158 14.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.028 3.972 3 H 0.075 0.925 4 C -0.169 4.169 5 C -0.027 4.027 6 H 0.076 0.924 7 N -0.249 5.249 8 C -0.114 4.114 9 C -0.004 4.004 10 C 0.030 3.970 11 C -0.509 4.509 12 H 0.064 0.936 13 C -0.176 4.176 14 N -0.555 5.555 15 Si 0.768 3.232 16 H -0.215 1.215 17 H -0.200 1.200 18 H -0.202 1.202 19 C -0.226 4.226 20 C -0.204 4.204 21 C -0.220 4.220 22 C -0.008 4.008 23 O -0.312 6.312 24 H 0.100 0.900 25 H 0.088 0.912 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.090 0.910 31 H 0.043 0.957 32 H 0.058 0.942 33 H 0.030 0.970 34 H 0.064 0.936 35 H 0.092 0.908 36 H 0.103 0.897 37 H 0.088 0.912 38 H 0.075 0.925 39 H 0.083 0.917 40 H 0.092 0.908 41 H 0.128 0.872 42 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -8.811 -2.616 -10.785 14.170 hybrid contribution 0.786 0.425 0.584 1.067 sum -8.026 -2.191 -10.201 13.163 Atomic orbital electron populations 1.21738 0.91434 1.03144 1.03207 1.22193 0.96242 0.94707 0.84099 0.92545 1.22220 0.94034 1.02052 0.98604 1.21788 0.95790 0.97002 0.88124 0.92370 1.61871 1.12667 1.11161 1.39154 1.22352 1.00301 0.88383 1.00323 1.21320 0.86304 0.98162 0.94616 1.18919 0.93135 0.91547 0.93396 1.20424 1.09902 1.06466 1.14086 0.93585 1.25530 0.95228 0.97800 0.98996 1.70075 1.27794 1.15114 1.42486 0.85882 0.78601 0.77577 0.81113 1.21463 1.20014 1.20157 1.23009 1.05733 0.92940 1.00906 1.22415 0.93342 1.04768 0.99842 1.22830 1.01096 1.01366 0.96697 1.22548 0.80435 0.99721 0.98120 1.87870 1.21544 1.78291 1.43514 0.89976 0.91207 0.91856 0.90864 0.91067 0.92447 0.90952 0.95730 0.94189 0.97036 0.93595 0.90839 0.89659 0.91247 0.92510 0.91663 0.90752 0.87222 0.93008 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.57 71.98 0.69 -1.98 16 2 C 0.09 2.09 3.26 30.63 0.10 2.19 16 3 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 4 C -0.13 -3.71 4.72 30.69 0.14 -3.57 16 5 C 0.08 2.69 2.27 45.03 0.10 2.79 16 6 H 0.06 2.12 7.86 -2.38 -0.02 2.10 16 7 N -0.53 -20.51 4.35 -896.34 -3.90 -24.40 16 8 C 0.03 1.15 8.10 127.69 1.03 2.19 16 9 C 0.12 5.46 4.32 86.30 0.37 5.83 16 10 C 0.03 1.50 1.18 -52.93 -0.06 1.43 16 11 C -0.47 -25.73 8.52 25.60 0.22 -25.51 16 12 H 0.05 2.57 7.82 -2.91 -0.02 2.54 16 13 C 0.02 1.27 5.38 84.65 0.46 1.73 16 14 N -0.92 -52.84 12.82 21.45 0.27 -52.57 16 15 Si 0.94 44.41 29.55 68.60 2.03 46.43 16 16 H -0.29 -13.46 7.11 99.48 0.71 -12.76 16 17 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 18 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 19 C -0.19 -8.03 8.65 30.62 0.26 -7.77 16 20 C -0.17 -7.85 9.33 30.62 0.29 -7.57 16 21 C -0.18 -4.98 4.73 30.68 0.15 -4.83 16 22 C 0.07 1.63 6.84 72.01 0.49 2.12 16 23 O -0.39 -10.17 10.41 -148.98 -1.55 -11.72 16 24 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 25 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 27 H 0.07 2.03 6.24 -2.39 -0.01 2.01 16 28 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.06 2.09 6.83 -2.39 -0.02 2.08 16 30 H 0.07 2.14 6.01 -2.39 -0.01 2.13 16 31 H 0.02 0.76 6.68 -2.39 -0.02 0.74 16 32 H 0.04 1.99 7.81 -2.38 -0.02 1.97 16 33 H 0.01 0.48 7.22 -2.39 -0.02 0.46 16 34 H 0.26 14.25 8.32 -92.70 -0.77 13.48 16 35 H 0.07 3.14 8.14 -2.39 -0.02 3.12 16 36 H 0.09 3.18 8.14 -2.39 -0.02 3.16 16 37 H 0.07 3.09 8.14 -2.39 -0.02 3.07 16 38 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 39 H 0.06 1.87 7.25 -2.39 -0.02 1.85 16 40 H 0.07 2.03 6.41 -2.39 -0.02 2.01 16 41 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 42 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -59.94 323.33 2.06 -57.88 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.96 Total: 17.34 kcal Atomic # 6 Polarization: -37.20 SS G_CDS: 4.24 Total: -32.96 kcal Atomic # 7 Polarization: -73.35 SS G_CDS: -3.62 Total: -76.97 kcal Atomic # 8 Polarization: -10.17 SS G_CDS: -1.55 Total: -11.72 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 2.03 Total: 46.43 kcal Total: -59.94 2.06 -57.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721484394.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.771 kcal (2) G-P(sol) polarization free energy of solvation -59.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds