Wall clock time and date at job start Mon Mar 30 2020 07:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.48912 * 2 1 4 4 C 1.53092 * 109.48020 * 239.97869 * 2 1 3 5 5 C 1.53175 * 109.21680 * 182.37301 * 4 2 1 6 6 H 1.08996 * 109.54538 * 297.14002 * 5 4 2 7 7 N 1.46906 * 109.54493 * 176.87432 * 5 4 2 8 8 C 1.46896 * 111.00166 * 298.95990 * 7 5 4 9 9 C 1.46900 * 111.00009 * 174.99651 * 7 5 4 10 10 C 1.53000 * 109.47039 * 196.11465 * 9 7 5 11 11 C 1.50697 * 115.54908 * 55.44152 * 10 9 7 12 12 H 1.08000 * 119.99776 * 265.14905 * 11 10 9 13 13 C 1.37878 * 120.00277 * 85.14632 * 11 10 9 14 14 N 1.31520 * 119.99844 * 3.94628 * 13 11 10 15 15 Si 1.86793 * 120.00269 * 183.94401 * 13 11 10 16 16 H 1.48497 * 109.47171 * 60.00083 * 15 13 11 17 17 H 1.48502 * 109.47191 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46979 * 300.00209 * 15 13 11 19 19 C 1.53000 * 117.49798 * 269.76518 * 10 9 7 20 20 C 1.53000 * 117.49695 * 201.10578 * 10 9 7 21 21 C 1.53316 * 108.96643 * 56.95421 * 5 4 2 22 22 C 1.53099 * 109.18989 * 303.05553 * 21 5 4 23 23 O 1.42898 * 109.41362 * 57.61127 * 22 21 5 24 24 H 1.09002 * 109.46658 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.46664 * 300.02245 * 1 2 3 26 26 H 1.08998 * 109.47270 * 60.02573 * 1 2 3 27 27 H 1.09001 * 109.52532 * 302.31306 * 4 2 1 28 28 H 1.08999 * 109.52509 * 62.43637 * 4 2 1 29 29 H 1.08989 * 109.47315 * 56.33069 * 8 7 5 30 30 H 1.09002 * 109.46917 * 176.33826 * 8 7 5 31 31 H 1.09003 * 109.46774 * 296.33345 * 8 7 5 32 32 H 1.09002 * 109.47369 * 316.12147 * 9 7 5 33 33 H 1.09006 * 109.46493 * 76.11865 * 9 7 5 34 34 H 0.96994 * 119.99937 * 185.01157 * 14 13 11 35 35 H 1.08993 * 117.50244 * 0.02562 * 19 10 9 36 36 H 1.09006 * 117.49406 * 145.02420 * 19 10 9 37 37 H 1.09001 * 117.50279 * 214.98132 * 20 10 9 38 38 H 1.09005 * 117.49827 * 359.97438 * 20 10 9 39 39 H 1.08999 * 109.50856 * 183.14426 * 21 5 4 40 40 H 1.08996 * 109.55695 * 62.99915 * 21 5 4 41 41 H 1.08993 * 109.48292 * 297.62488 * 22 21 5 42 42 H 1.08999 * 109.48675 * 177.59678 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7221 -1.2497 5 6 3.5711 -0.7706 -1.2140 6 1 3.9689 0.2437 -1.2426 7 7 4.0660 -1.5273 -2.3719 8 6 3.5716 -2.9103 -2.3473 9 6 5.5332 -1.4936 -2.4347 10 6 5.9941 -1.9272 -3.8277 11 6 5.4158 -1.1427 -4.9771 12 1 4.5366 -1.5044 -5.4895 13 6 6.0090 0.0368 -5.3744 14 7 7.1232 0.4379 -4.8023 15 14 5.2302 1.0652 -6.7254 16 1 3.8634 1.4726 -6.3118 17 1 6.0568 2.2754 -6.9651 18 1 5.1517 0.2647 -7.9738 19 6 6.2597 -3.4172 -4.0520 20 6 7.4305 -2.4345 -3.9705 21 6 4.0177 -1.4600 0.0806 22 6 3.4308 -0.7093 1.2789 23 8 2.0067 -0.6743 1.1663 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5142 0.8898 26 1 -0.3634 0.5134 -0.8902 27 1 1.6443 -1.7373 -1.2712 28 1 1.7139 -0.1847 -2.1399 29 1 2.4825 -2.9062 -2.3060 30 1 3.8991 -3.4292 -3.2482 31 1 3.9665 -3.4218 -1.4695 32 1 5.8823 -0.4804 -2.2354 33 1 5.9445 -2.1730 -1.6881 34 1 7.5015 1.3016 -5.0296 35 1 6.1057 -4.0886 -3.2073 36 1 6.0164 -3.8299 -5.0311 37 1 7.9571 -2.2012 -4.8959 38 1 8.0473 -2.4589 -3.0720 39 1 5.1060 -1.4497 0.1418 40 1 3.6623 -2.4904 0.0866 41 1 3.8193 0.3089 1.2957 42 1 3.7102 -1.2202 2.2003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000721484399.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:05 Heat of formation + Delta-G solvation = -21.414210 kcal Electronic energy + Delta-G solvation = -20045.123302 eV Core-core repulsion = 17218.861746 eV Total energy + Delta-G solvation = -2826.261556 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.70169 -37.40205 -35.38631 -32.72752 -31.79888 -31.04935 -27.72213 -26.92793 -25.39129 -24.15793 -22.98555 -21.24363 -20.97817 -19.34321 -18.84359 -16.29028 -15.99287 -15.83552 -14.99677 -14.72437 -14.47324 -14.18816 -13.93805 -13.47229 -13.11727 -13.00419 -12.58285 -12.32886 -12.12416 -11.83313 -11.45009 -11.30885 -11.17014 -10.86875 -10.83552 -10.78071 -10.60216 -10.54128 -10.36910 -10.07528 -10.00362 -9.47617 -9.26284 -8.83157 -8.25869 -7.97062 -7.36320 -5.89547 -3.91246 3.38834 3.42894 3.46892 3.84105 4.47739 4.54821 4.96388 4.98153 5.06895 5.25504 5.33468 5.37646 5.39419 5.50723 5.56674 5.64182 5.70025 5.82477 5.87273 5.97468 6.04732 6.05171 6.14442 6.18586 6.22729 6.32442 6.42724 6.47018 6.55103 6.63177 6.69505 6.78891 6.98130 7.18401 7.32909 7.53036 7.60226 7.89914 8.02512 8.04627 8.61126 9.06908 9.71231 11.19852 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.021777 B = 0.006691 C = 0.005790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.441946 B = 4183.673879 C = 4834.872600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.086 3.914 3 H 0.056 0.944 4 C -0.141 4.141 5 C 0.085 3.915 6 H 0.079 0.921 7 N -0.506 5.506 8 C 0.025 3.975 9 C 0.106 3.894 10 C 0.053 3.947 11 C -0.460 4.460 12 H 0.057 0.943 13 C 0.067 3.933 14 N -0.890 5.890 15 Si 0.886 3.114 16 H -0.277 1.277 17 H -0.291 1.291 18 H -0.280 1.280 19 C -0.218 4.218 20 C -0.153 4.153 21 C -0.191 4.191 22 C 0.069 3.931 23 O -0.385 6.385 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.081 0.919 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.012 0.988 32 H 0.070 0.930 33 H 0.002 0.998 34 H 0.257 0.743 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.084 0.916 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.072 0.928 41 H 0.048 0.952 42 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.204 -1.938 9.985 13.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.028 3.972 3 H 0.074 0.926 4 C -0.179 4.179 5 C -0.025 4.025 6 H 0.097 0.903 7 N -0.227 5.227 8 C -0.123 4.123 9 C -0.021 4.021 10 C 0.052 3.948 11 C -0.498 4.498 12 H 0.075 0.925 13 C -0.134 4.134 14 N -0.528 5.528 15 Si 0.714 3.286 16 H -0.203 1.203 17 H -0.216 1.216 18 H -0.205 1.205 19 C -0.255 4.255 20 C -0.192 4.192 21 C -0.231 4.231 22 C -0.009 4.009 23 O -0.305 6.305 24 H 0.080 0.920 25 H 0.078 0.922 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.099 0.901 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.031 0.969 32 H 0.088 0.912 33 H 0.020 0.980 34 H 0.066 0.934 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.076 0.924 39 H 0.090 0.910 40 H 0.090 0.910 41 H 0.066 0.934 42 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -8.332 -1.668 9.610 12.828 hybrid contribution 0.321 0.335 -0.146 0.487 sum -8.011 -1.332 9.464 12.470 Atomic orbital electron populations 1.21742 0.93316 1.02717 1.02148 1.22112 0.94773 0.95111 0.85222 0.92580 1.22304 0.95656 1.01879 0.98011 1.21794 0.94483 0.98288 0.87924 0.90332 1.61998 1.11127 1.12146 1.37445 1.22444 0.99357 0.90094 1.00445 1.21661 0.84688 0.99822 0.95959 1.18802 0.93897 0.89126 0.92959 1.20223 1.10769 1.06067 1.12785 0.92509 1.24905 0.94267 0.97845 0.96387 1.69999 1.18614 1.19975 1.44219 0.86767 0.79393 0.79794 0.82621 1.20278 1.21648 1.20542 1.23050 1.07619 0.94930 0.99896 1.22502 0.92249 1.03720 1.00680 1.22960 1.01518 1.01394 0.97188 1.22458 0.80910 0.99427 0.98093 1.87865 1.21086 1.78184 1.43331 0.91981 0.92219 0.91034 0.91030 0.90081 0.92578 0.90651 0.96929 0.91175 0.97999 0.93358 0.92257 0.90697 0.89773 0.92424 0.90986 0.90979 0.93383 0.89442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.52 9.57 37.16 0.36 -1.16 16 2 C 0.09 1.11 3.27 -26.68 -0.09 1.03 16 3 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 4 C -0.14 -2.05 4.58 -26.59 -0.12 -2.17 16 5 C 0.08 1.41 2.30 -67.46 -0.15 1.25 16 6 H 0.08 1.40 7.98 -51.93 -0.41 0.98 16 7 N -0.51 -9.93 4.41 -234.58 -1.03 -10.96 16 8 C 0.02 0.44 8.48 60.06 0.51 0.95 16 9 C 0.11 2.33 4.16 -3.82 -0.02 2.31 16 10 C 0.05 1.29 1.24 -155.66 -0.19 1.09 16 11 C -0.46 -12.49 8.54 -34.44 -0.29 -12.78 16 12 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 13 C 0.07 1.84 5.43 -17.82 -0.10 1.74 16 14 N -0.89 -25.26 12.66 55.43 0.70 -24.55 16 15 Si 0.89 21.48 29.54 -169.99 -5.02 16.46 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.28 -6.75 7.11 56.52 0.40 -6.34 16 19 C -0.22 -4.77 8.38 -26.69 -0.22 -4.99 16 20 C -0.15 -3.65 9.18 -26.69 -0.25 -3.89 16 21 C -0.19 -2.80 4.76 -26.52 -0.13 -2.92 16 22 C 0.07 0.88 6.84 37.21 0.25 1.14 16 23 O -0.39 -5.42 10.41 -35.23 -0.37 -5.79 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.07 1.04 6.21 -51.93 -0.32 0.72 16 28 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.06 0.89 6.09 -51.94 -0.32 0.57 16 30 H 0.07 1.42 6.24 -51.93 -0.32 1.10 16 31 H 0.01 0.21 6.40 -51.93 -0.33 -0.13 16 32 H 0.07 1.69 7.88 -51.93 -0.41 1.28 16 33 H 0.00 0.04 7.24 -51.93 -0.38 -0.34 16 34 H 0.26 7.05 8.32 -40.82 -0.34 6.71 16 35 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 36 H 0.07 1.65 8.14 -51.93 -0.42 1.22 16 37 H 0.08 2.16 8.14 -51.93 -0.42 1.74 16 38 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 39 H 0.07 1.08 7.11 -51.93 -0.37 0.72 16 40 H 0.07 1.08 6.32 -51.93 -0.33 0.75 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 LS Contribution 322.15 15.07 4.85 4.85 Total: -1.00 -28.37 322.15 -8.69 -37.06 By element: Atomic # 1 Polarization: 8.73 SS G_CDS: -7.38 Total: 1.35 kcal Atomic # 6 Polarization: -17.98 SS G_CDS: -0.44 Total: -18.42 kcal Atomic # 7 Polarization: -35.18 SS G_CDS: -0.33 Total: -35.52 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -0.37 Total: -5.79 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.37 -8.69 -37.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721484399.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.646 kcal (2) G-P(sol) polarization free energy of solvation -28.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds