Wall clock time and date at job start Mon Mar 30 2020 07:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.48912 * 2 1 4 4 C 1.53092 * 109.48020 * 239.97869 * 2 1 3 5 5 C 1.53175 * 109.21680 * 182.37301 * 4 2 1 6 6 H 1.08996 * 109.54538 * 297.14002 * 5 4 2 7 7 N 1.46906 * 109.54493 * 176.87432 * 5 4 2 8 8 C 1.46896 * 111.00166 * 298.95990 * 7 5 4 9 9 C 1.46900 * 111.00009 * 174.99651 * 7 5 4 10 10 C 1.53000 * 109.47039 * 196.11465 * 9 7 5 11 11 C 1.50697 * 115.54908 * 55.44152 * 10 9 7 12 12 H 1.08000 * 119.99776 * 265.14905 * 11 10 9 13 13 C 1.37878 * 120.00277 * 85.14632 * 11 10 9 14 14 N 1.31520 * 119.99844 * 3.94628 * 13 11 10 15 15 Si 1.86793 * 120.00269 * 183.94401 * 13 11 10 16 16 H 1.48497 * 109.47171 * 60.00083 * 15 13 11 17 17 H 1.48502 * 109.47191 * 180.02562 * 15 13 11 18 18 H 1.48505 * 109.46979 * 300.00209 * 15 13 11 19 19 C 1.53000 * 117.49798 * 269.76518 * 10 9 7 20 20 C 1.53000 * 117.49695 * 201.10578 * 10 9 7 21 21 C 1.53316 * 108.96643 * 56.95421 * 5 4 2 22 22 C 1.53099 * 109.18989 * 303.05553 * 21 5 4 23 23 O 1.42898 * 109.41362 * 57.61127 * 22 21 5 24 24 H 1.09002 * 109.46658 * 180.02562 * 1 2 3 25 25 H 1.08995 * 109.46664 * 300.02245 * 1 2 3 26 26 H 1.08998 * 109.47270 * 60.02573 * 1 2 3 27 27 H 1.09001 * 109.52532 * 302.31306 * 4 2 1 28 28 H 1.08999 * 109.52509 * 62.43637 * 4 2 1 29 29 H 1.08989 * 109.47315 * 56.33069 * 8 7 5 30 30 H 1.09002 * 109.46917 * 176.33826 * 8 7 5 31 31 H 1.09003 * 109.46774 * 296.33345 * 8 7 5 32 32 H 1.09002 * 109.47369 * 316.12147 * 9 7 5 33 33 H 1.09006 * 109.46493 * 76.11865 * 9 7 5 34 34 H 0.96994 * 119.99937 * 185.01157 * 14 13 11 35 35 H 1.08993 * 117.50244 * 0.02562 * 19 10 9 36 36 H 1.09006 * 117.49406 * 145.02420 * 19 10 9 37 37 H 1.09001 * 117.50279 * 214.98132 * 20 10 9 38 38 H 1.09005 * 117.49827 * 359.97438 * 20 10 9 39 39 H 1.08999 * 109.50856 * 183.14426 * 21 5 4 40 40 H 1.08996 * 109.55695 * 62.99915 * 21 5 4 41 41 H 1.08993 * 109.48292 * 297.62488 * 22 21 5 42 42 H 1.08999 * 109.48675 * 177.59678 * 22 21 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8937 1.0275 0.0000 4 6 2.0405 -0.7221 -1.2497 5 6 3.5711 -0.7706 -1.2140 6 1 3.9689 0.2437 -1.2426 7 7 4.0660 -1.5273 -2.3719 8 6 3.5716 -2.9103 -2.3473 9 6 5.5332 -1.4936 -2.4347 10 6 5.9941 -1.9272 -3.8277 11 6 5.4158 -1.1427 -4.9771 12 1 4.5366 -1.5044 -5.4895 13 6 6.0090 0.0368 -5.3744 14 7 7.1232 0.4379 -4.8023 15 14 5.2302 1.0652 -6.7254 16 1 3.8634 1.4726 -6.3118 17 1 6.0568 2.2754 -6.9651 18 1 5.1517 0.2647 -7.9738 19 6 6.2597 -3.4172 -4.0520 20 6 7.4305 -2.4345 -3.9705 21 6 4.0177 -1.4600 0.0806 22 6 3.4308 -0.7093 1.2789 23 8 2.0067 -0.6743 1.1663 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3632 0.5142 0.8898 26 1 -0.3634 0.5134 -0.8902 27 1 1.6443 -1.7373 -1.2712 28 1 1.7139 -0.1847 -2.1399 29 1 2.4825 -2.9062 -2.3060 30 1 3.8991 -3.4292 -3.2482 31 1 3.9665 -3.4218 -1.4695 32 1 5.8823 -0.4804 -2.2354 33 1 5.9445 -2.1730 -1.6881 34 1 7.5015 1.3016 -5.0296 35 1 6.1057 -4.0886 -3.2073 36 1 6.0164 -3.8299 -5.0311 37 1 7.9571 -2.2012 -4.8959 38 1 8.0473 -2.4589 -3.0720 39 1 5.1060 -1.4497 0.1418 40 1 3.6623 -2.4904 0.0866 41 1 3.8193 0.3089 1.2957 42 1 3.7102 -1.2202 2.2003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000721484399.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:33:05 Heat of formation + Delta-G solvation = -37.947210 kcal Electronic energy + Delta-G solvation = -20045.840227 eV Core-core repulsion = 17218.861746 eV Total energy + Delta-G solvation = -2826.978481 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.91546 -38.97494 -36.96075 -33.89154 -33.72831 -32.36958 -28.94814 -28.35560 -27.38272 -25.58491 -24.15369 -22.87223 -22.36544 -20.89310 -20.48981 -17.92806 -17.32428 -17.05913 -16.58449 -16.37513 -15.90698 -15.63684 -15.43889 -14.83474 -14.57328 -14.49492 -14.02660 -13.49272 -13.26743 -13.13858 -13.04665 -12.82754 -12.72160 -12.65000 -12.52898 -12.30565 -12.02966 -11.97600 -11.86070 -11.75269 -11.30350 -11.11756 -10.82367 -10.51146 -10.25225 -9.86436 -8.85232 -8.00115 -6.06276 1.44051 1.44977 1.52035 2.49825 2.83602 3.08376 3.29224 3.61375 3.78410 3.85108 3.99740 4.17346 4.22547 4.28996 4.37811 4.42892 4.51558 4.56743 4.63453 4.67704 4.71447 4.78292 4.80033 4.85259 4.89909 4.98797 5.02810 5.05336 5.08155 5.19338 5.25865 5.30534 5.32164 5.37305 5.67822 5.72801 5.88842 6.29155 6.36607 6.47919 6.61063 6.96177 7.58235 9.08329 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.021777 B = 0.006691 C = 0.005790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.441946 B = 4183.673879 C = 4834.872600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.085 3.915 3 H 0.057 0.943 4 C -0.133 4.133 5 C 0.082 3.918 6 H 0.059 0.941 7 N -0.527 5.527 8 C 0.030 3.970 9 C 0.124 3.876 10 C 0.029 3.971 11 C -0.469 4.469 12 H 0.045 0.955 13 C 0.022 3.978 14 N -0.916 5.916 15 Si 0.941 3.059 16 H -0.275 1.275 17 H -0.289 1.289 18 H -0.276 1.276 19 C -0.189 4.189 20 C -0.162 4.162 21 C -0.182 4.182 22 C 0.069 3.931 23 O -0.393 6.393 24 H 0.062 0.938 25 H 0.069 0.931 26 H 0.082 0.918 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.060 0.940 31 H 0.025 0.975 32 H 0.038 0.962 33 H 0.014 0.986 34 H 0.255 0.745 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.057 0.943 38 H 0.068 0.932 39 H 0.065 0.935 40 H 0.073 0.927 41 H 0.052 0.948 42 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.630 -2.470 10.969 14.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.027 3.973 3 H 0.075 0.925 4 C -0.171 4.171 5 C -0.027 4.027 6 H 0.077 0.923 7 N -0.249 5.249 8 C -0.118 4.118 9 C -0.004 4.004 10 C 0.028 3.972 11 C -0.507 4.507 12 H 0.063 0.937 13 C -0.176 4.176 14 N -0.555 5.555 15 Si 0.767 3.233 16 H -0.200 1.200 17 H -0.215 1.215 18 H -0.202 1.202 19 C -0.226 4.226 20 C -0.200 4.200 21 C -0.221 4.221 22 C -0.008 4.008 23 O -0.312 6.312 24 H 0.081 0.919 25 H 0.088 0.912 26 H 0.101 0.899 27 H 0.093 0.907 28 H 0.091 0.909 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.032 0.968 34 H 0.064 0.936 35 H 0.104 0.896 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.087 0.913 39 H 0.083 0.917 40 H 0.091 0.909 41 H 0.070 0.930 42 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -9.773 -2.209 10.596 14.583 hybrid contribution 0.763 0.477 -0.462 1.011 sum -9.010 -1.732 10.134 13.670 Atomic orbital electron populations 1.21740 0.91404 1.03147 1.03227 1.22195 0.96258 0.94720 0.84100 0.92518 1.22244 0.93939 1.02183 0.98710 1.21813 0.95787 0.97057 0.88050 0.92290 1.61901 1.09609 1.13735 1.39630 1.22402 1.00343 0.88824 1.00216 1.21294 0.86426 0.97982 0.94699 1.18933 0.94125 0.90677 0.93468 1.20438 1.10245 1.06521 1.13513 0.93672 1.25521 0.94765 0.98966 0.98332 1.70103 1.19644 1.20150 1.45628 0.85896 0.78581 0.78405 0.80373 1.19995 1.21490 1.20169 1.23000 1.04944 0.93937 1.00756 1.22396 0.92420 1.05267 0.99909 1.22846 1.01121 1.01351 0.96809 1.22537 0.80441 0.99719 0.98081 1.87869 1.21521 1.78299 1.43539 0.91861 0.91238 0.89912 0.90743 0.90891 0.90902 0.92145 0.95630 0.94316 0.96846 0.93618 0.89605 0.90924 0.92436 0.91330 0.91676 0.90859 0.92981 0.87277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.62 9.57 71.98 0.69 -1.93 16 2 C 0.09 2.05 3.27 30.63 0.10 2.15 16 3 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 4 C -0.13 -3.69 4.58 30.68 0.14 -3.55 16 5 C 0.08 2.66 2.30 45.08 0.10 2.77 16 6 H 0.06 2.13 7.98 -2.39 -0.02 2.11 16 7 N -0.53 -20.37 4.41 -896.07 -3.95 -24.32 16 8 C 0.03 1.00 8.48 127.69 1.08 2.08 16 9 C 0.12 5.43 4.16 86.30 0.36 5.79 16 10 C 0.03 1.40 1.24 -52.93 -0.07 1.33 16 11 C -0.47 -25.67 8.54 25.60 0.22 -25.45 16 12 H 0.05 2.52 7.82 -2.91 -0.02 2.50 16 13 C 0.02 1.24 5.43 84.65 0.46 1.70 16 14 N -0.92 -52.93 12.66 21.45 0.27 -52.66 16 15 Si 0.94 44.47 29.54 68.60 2.03 46.50 16 16 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 17 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 18 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 19 C -0.19 -8.07 8.38 30.62 0.26 -7.81 16 20 C -0.16 -7.71 9.18 30.62 0.28 -7.43 16 21 C -0.18 -5.04 4.76 30.73 0.15 -4.89 16 22 C 0.07 1.64 6.84 72.02 0.49 2.13 16 23 O -0.39 -10.12 10.41 -148.98 -1.55 -11.67 16 24 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 26 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.07 2.02 6.21 -2.39 -0.01 2.00 16 28 H 0.07 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.07 2.16 6.09 -2.39 -0.01 2.14 16 30 H 0.06 2.18 6.24 -2.39 -0.01 2.17 16 31 H 0.03 0.78 6.40 -2.39 -0.02 0.77 16 32 H 0.04 1.91 7.88 -2.39 -0.02 1.89 16 33 H 0.01 0.55 7.24 -2.38 -0.02 0.53 16 34 H 0.25 14.25 8.32 -92.71 -0.77 13.48 16 35 H 0.09 3.20 8.08 -2.39 -0.02 3.18 16 36 H 0.07 3.11 8.14 -2.38 -0.02 3.09 16 37 H 0.06 3.02 8.14 -2.39 -0.02 3.00 16 38 H 0.07 3.06 8.14 -2.38 -0.02 3.04 16 39 H 0.06 1.89 7.11 -2.39 -0.02 1.87 16 40 H 0.07 2.02 6.32 -2.39 -0.02 2.00 16 41 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 42 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 Total: -1.00 -60.03 322.15 2.03 -58.01 By element: Atomic # 1 Polarization: 16.28 SS G_CDS: 0.97 Total: 17.25 kcal Atomic # 6 Polarization: -37.36 SS G_CDS: 4.26 Total: -33.10 kcal Atomic # 7 Polarization: -73.30 SS G_CDS: -3.68 Total: -76.98 kcal Atomic # 8 Polarization: -10.12 SS G_CDS: -1.55 Total: -11.67 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.50 kcal Total: -60.03 2.03 -58.01 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000721484399.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.058 kcal (2) G-P(sol) polarization free energy of solvation -60.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.005 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds