Wall clock time and date at job start Mon Mar 30 2020 07:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.48687 * 2 1 4 4 C 1.53083 * 109.48350 * 239.97327 * 2 1 3 5 5 C 1.53173 * 109.16628 * 182.40697 * 4 2 1 6 6 H 1.09001 * 109.54689 * 297.02440 * 5 4 2 7 7 C 1.53003 * 109.54527 * 176.84673 * 5 4 2 8 8 N 1.46500 * 109.46981 * 175.17916 * 7 5 4 9 9 C 1.36940 * 119.99973 * 90.00150 * 8 7 5 10 10 H 1.08001 * 119.99869 * 214.66625 * 9 8 7 11 11 C 1.38810 * 120.00281 * 34.66665 * 9 8 7 12 12 N 1.31618 * 119.99844 * 27.50651 * 11 9 8 13 13 Si 1.86797 * 120.00209 * 207.50506 * 11 9 8 14 14 H 1.48497 * 109.46930 * 270.00000 * 13 11 9 15 15 H 1.48499 * 109.47187 * 150.00198 * 13 11 9 16 16 H 1.48500 * 109.46988 * 29.99885 * 13 11 9 17 17 C 1.46501 * 120.00158 * 269.99890 * 8 7 5 18 18 C 1.52995 * 117.49802 * 187.34685 * 17 8 7 19 19 C 1.52993 * 117.50031 * 118.68353 * 17 8 7 20 20 C 1.53181 * 109.10736 * 56.93548 * 5 4 2 21 21 C 1.53099 * 109.15715 * 303.15158 * 20 5 4 22 22 H 1.09000 * 109.41645 * 297.48954 * 21 20 5 23 23 C 1.52996 * 109.48541 * 177.50381 * 21 20 5 24 24 O 1.42901 * 109.48851 * 57.47480 * 21 20 5 25 25 H 1.08992 * 109.47110 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47025 * 300.02994 * 1 2 3 27 27 H 1.09003 * 109.46801 * 60.02786 * 1 2 3 28 28 H 1.09006 * 109.52421 * 62.49861 * 4 2 1 29 29 H 1.09000 * 109.57347 * 302.34751 * 4 2 1 30 30 H 1.08991 * 109.47126 * 55.17529 * 7 5 4 31 31 H 1.08998 * 109.46878 * 295.17332 * 7 5 4 32 32 H 0.97005 * 119.99897 * 4.87822 * 12 11 9 33 33 H 1.09005 * 115.54622 * 333.01280 * 17 8 7 34 34 H 1.08993 * 117.50495 * 0.02562 * 18 17 8 35 35 H 1.09005 * 117.49347 * 145.01702 * 18 17 8 36 36 H 1.09002 * 117.49808 * 214.97835 * 19 17 8 37 37 H 1.08998 * 117.49867 * 359.97438 * 19 17 8 38 38 H 1.08994 * 109.52379 * 62.97064 * 20 5 4 39 39 H 1.09001 * 109.52218 * 183.15906 * 20 5 4 40 40 H 1.09004 * 109.47291 * 299.96923 * 23 21 20 41 41 H 1.09004 * 109.47224 * 59.96906 * 23 21 20 42 42 H 1.09005 * 109.47445 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0406 -0.7222 -1.2495 5 6 3.5711 -0.7707 -1.2121 6 1 3.9691 0.2436 -1.2423 7 6 4.0878 -1.5593 -2.4172 8 7 5.5517 -1.5075 -2.4434 9 6 6.2825 -2.4656 -1.7929 10 1 7.2186 -2.2038 -1.3222 11 6 5.8201 -3.7734 -1.7385 12 7 5.0389 -4.2353 -2.6916 13 14 6.3068 -4.8775 -0.3125 14 1 7.5609 -5.5976 -0.6497 15 1 5.2244 -5.8615 -0.0566 16 1 6.5219 -4.0511 0.9024 17 6 6.2338 -0.4307 -3.1656 18 6 7.7547 -0.5248 -3.3024 19 6 7.1332 0.5044 -2.3549 20 6 4.0196 -1.4588 0.0810 21 6 3.4308 -0.7093 1.2791 22 1 3.8193 0.3090 1.2960 23 6 3.8227 -1.4265 2.5725 24 8 2.0066 -0.6741 1.1665 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5143 0.8897 27 1 -0.3633 0.5134 -0.8903 28 1 1.7149 -0.1842 -2.1398 29 1 1.6444 -1.7373 -1.2721 30 1 3.6923 -1.1223 -3.3340 31 1 3.7624 -2.5966 -2.3392 32 1 4.8435 -3.6864 -3.4672 33 1 5.6792 0.0014 -3.9987 34 1 8.2478 -1.3880 -2.8556 35 1 8.2008 -0.1542 -4.2254 36 1 7.1708 1.5517 -2.6548 37 1 7.2172 0.3187 -1.2842 38 1 3.6645 -2.4892 0.0873 39 1 5.1078 -1.4471 0.1413 40 1 3.4345 -2.4449 2.5552 41 1 4.9090 -1.4531 2.6583 42 1 3.4038 -0.8924 3.4254 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724865970.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:16 Heat of formation + Delta-G solvation = -20.701834 kcal Electronic energy + Delta-G solvation = -20400.850568 eV Core-core repulsion = 17574.619903 eV Total energy + Delta-G solvation = -2826.230665 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 2.42 seconds Orbital eigenvalues (eV) -39.27265 -37.19614 -34.54812 -33.34124 -32.63942 -30.24003 -29.09719 -25.97775 -25.57606 -23.41831 -21.49965 -21.37499 -20.82584 -19.94313 -19.34481 -16.87116 -16.12145 -15.48706 -15.12368 -14.70925 -14.18028 -13.88635 -13.58549 -13.50824 -12.77768 -12.67231 -12.33092 -12.01539 -11.93201 -11.81075 -11.68029 -11.30445 -11.01900 -10.94925 -10.77506 -10.67589 -10.47403 -10.17310 -10.07251 -9.91910 -9.86534 -9.66334 -9.39613 -9.24426 -8.85662 -8.28096 -6.73980 -6.04923 -3.35109 3.45876 3.50330 3.64743 4.05054 4.51941 4.84927 4.96437 5.21641 5.26339 5.34417 5.40330 5.46560 5.55580 5.64601 5.78743 5.78956 5.81349 5.90602 5.96155 6.03828 6.07393 6.12866 6.17493 6.29909 6.34226 6.39800 6.41023 6.46855 6.52890 6.56543 6.73119 6.84697 6.93141 6.95753 7.08344 7.23086 7.36192 7.72922 8.07352 8.55138 9.11181 9.80651 10.24896 11.12498 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.016748 B = 0.009020 C = 0.007412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.461132 B = 3103.419099 C = 3776.938765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.091 3.909 3 H 0.048 0.952 4 C -0.143 4.143 5 C -0.098 4.098 6 H 0.053 0.947 7 C 0.145 3.855 8 N -0.559 5.559 9 C -0.345 4.345 10 H 0.052 0.948 11 C -0.012 4.012 12 N -0.901 5.901 13 Si 1.051 2.949 14 H -0.294 1.294 15 H -0.285 1.285 16 H -0.288 1.288 17 C 0.124 3.876 18 C -0.192 4.192 19 C -0.225 4.225 20 C -0.126 4.126 21 C 0.084 3.916 22 H 0.046 0.954 23 C -0.141 4.141 24 O -0.385 6.385 25 H 0.062 0.938 26 H 0.057 0.943 27 H 0.066 0.934 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.026 0.974 31 H 0.084 0.916 32 H 0.270 0.730 33 H 0.082 0.918 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.071 0.929 37 H 0.084 0.916 38 H 0.064 0.936 39 H 0.091 0.909 40 H 0.061 0.939 41 H 0.070 0.930 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.685 8.174 4.367 10.384 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.033 3.967 3 H 0.066 0.934 4 C -0.182 4.182 5 C -0.119 4.119 6 H 0.072 0.928 7 C 0.018 3.982 8 N -0.276 5.276 9 C -0.474 4.474 10 H 0.070 0.930 11 C -0.216 4.216 12 N -0.539 5.539 13 Si 0.881 3.119 14 H -0.222 1.222 15 H -0.210 1.210 16 H -0.214 1.214 17 C 0.014 3.986 18 C -0.231 4.231 19 C -0.266 4.266 20 C -0.163 4.163 21 C 0.027 3.973 22 H 0.064 0.936 23 C -0.199 4.199 24 O -0.305 6.305 25 H 0.081 0.919 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.045 0.955 31 H 0.101 0.899 32 H 0.081 0.919 33 H 0.100 0.900 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.083 0.917 39 H 0.110 0.890 40 H 0.081 0.919 41 H 0.088 0.912 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -5.050 6.523 5.172 9.736 hybrid contribution 0.642 1.759 -0.913 2.083 sum -4.408 8.282 4.259 10.304 Atomic orbital electron populations 1.21754 0.93877 1.02671 1.01661 1.21975 0.94172 0.94675 0.85907 0.93358 1.22245 0.97486 1.01353 0.97098 1.21711 0.92540 0.99571 0.98073 0.92810 1.21019 0.83367 1.00881 0.92890 1.43487 1.00467 1.26469 1.57189 1.19646 1.07517 0.89189 1.31078 0.93010 1.25737 0.99494 0.94799 1.01568 1.70747 1.38486 1.37626 1.07069 0.83748 0.76132 0.75997 0.76045 1.22168 1.21028 1.21441 1.21100 0.89229 0.93363 0.94865 1.23040 0.98382 1.01589 1.00070 1.23360 1.10513 0.94576 0.98173 1.22120 1.02717 0.99185 0.92313 1.22196 0.80618 0.98202 0.96266 0.93567 1.21735 1.01312 1.01006 0.95800 1.87829 1.21692 1.78174 1.42777 0.91917 0.92436 0.91509 0.91968 0.91265 0.95522 0.89862 0.91880 0.90050 0.88253 0.90857 0.91076 0.89780 0.91728 0.89027 0.91942 0.91159 0.92770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.57 37.16 0.36 -1.43 16 2 C 0.09 1.39 3.26 -26.69 -0.09 1.30 16 3 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 4 C -0.14 -2.39 4.71 -26.60 -0.13 -2.52 16 5 C -0.10 -1.89 2.48 -90.44 -0.22 -2.12 16 6 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 7 C 0.14 3.20 4.40 -4.04 -0.02 3.18 16 8 N -0.56 -13.19 2.47 -165.67 -0.41 -13.60 16 9 C -0.35 -8.95 6.30 -15.06 -0.09 -9.05 16 10 H 0.05 1.40 7.03 -52.49 -0.37 1.03 16 11 C -0.01 -0.33 4.81 -17.43 -0.08 -0.41 16 12 N -0.90 -25.79 12.21 55.49 0.68 -25.11 16 13 Si 1.05 24.62 30.00 -169.99 -5.10 19.52 16 14 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 15 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 16 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 17 C 0.12 2.61 6.58 -67.94 -0.45 2.16 16 18 C -0.19 -3.84 9.77 -26.70 -0.26 -4.10 16 19 C -0.23 -4.30 10.30 -26.70 -0.27 -4.58 16 20 C -0.13 -2.52 4.16 -26.59 -0.11 -2.63 16 21 C 0.08 1.46 3.26 -26.68 -0.09 1.37 16 22 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 23 C -0.14 -2.18 9.56 37.16 0.36 -1.83 16 24 O -0.38 -6.73 10.05 -35.23 -0.35 -7.08 16 25 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 29 H 0.07 1.24 8.14 -51.93 -0.42 0.81 16 30 H 0.03 0.56 8.06 -51.93 -0.42 0.14 16 31 H 0.08 2.10 5.36 -51.93 -0.28 1.83 16 32 H 0.27 7.84 7.18 -40.82 -0.29 7.55 16 33 H 0.08 1.61 8.13 -51.93 -0.42 1.19 16 34 H 0.10 2.20 6.63 -51.93 -0.34 1.86 16 35 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 36 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.08 1.72 8.14 -51.93 -0.42 1.30 16 38 H 0.06 1.44 8.14 -51.93 -0.42 1.01 16 39 H 0.09 2.03 6.59 -51.93 -0.34 1.69 16 40 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 41 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 42 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 326.31 15.07 4.92 4.92 Total: -1.00 -27.54 326.31 -8.97 -36.52 By element: Atomic # 1 Polarization: 13.06 SS G_CDS: -7.60 Total: 5.46 kcal Atomic # 6 Polarization: -19.53 SS G_CDS: -1.10 Total: -20.63 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: 0.27 Total: -38.71 kcal Atomic # 8 Polarization: -6.73 SS G_CDS: -0.35 Total: -7.08 kcal Atomic # 14 Polarization: 24.62 SS G_CDS: -5.10 Total: 19.52 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -27.54 -8.97 -36.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724865970.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.817 kcal (2) G-P(sol) polarization free energy of solvation -27.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.727 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.975 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.43 seconds