Wall clock time and date at job start Mon Mar 30 2020 07:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09004 * 109.48687 * 2 1 4 4 C 1.53083 * 109.48350 * 239.97327 * 2 1 3 5 5 C 1.53173 * 109.16628 * 182.40697 * 4 2 1 6 6 H 1.09001 * 109.54689 * 297.02440 * 5 4 2 7 7 C 1.53003 * 109.54527 * 176.84673 * 5 4 2 8 8 N 1.46500 * 109.46981 * 175.17916 * 7 5 4 9 9 C 1.36940 * 119.99973 * 90.00150 * 8 7 5 10 10 H 1.08001 * 119.99869 * 214.66625 * 9 8 7 11 11 C 1.38810 * 120.00281 * 34.66665 * 9 8 7 12 12 N 1.31618 * 119.99844 * 27.50651 * 11 9 8 13 13 Si 1.86797 * 120.00209 * 207.50506 * 11 9 8 14 14 H 1.48497 * 109.46930 * 270.00000 * 13 11 9 15 15 H 1.48499 * 109.47187 * 150.00198 * 13 11 9 16 16 H 1.48500 * 109.46988 * 29.99885 * 13 11 9 17 17 C 1.46501 * 120.00158 * 269.99890 * 8 7 5 18 18 C 1.52995 * 117.49802 * 187.34685 * 17 8 7 19 19 C 1.52993 * 117.50031 * 118.68353 * 17 8 7 20 20 C 1.53181 * 109.10736 * 56.93548 * 5 4 2 21 21 C 1.53099 * 109.15715 * 303.15158 * 20 5 4 22 22 H 1.09000 * 109.41645 * 297.48954 * 21 20 5 23 23 C 1.52996 * 109.48541 * 177.50381 * 21 20 5 24 24 O 1.42901 * 109.48851 * 57.47480 * 21 20 5 25 25 H 1.08992 * 109.47110 * 180.02562 * 1 2 3 26 26 H 1.08995 * 109.47025 * 300.02994 * 1 2 3 27 27 H 1.09003 * 109.46801 * 60.02786 * 1 2 3 28 28 H 1.09006 * 109.52421 * 62.49861 * 4 2 1 29 29 H 1.09000 * 109.57347 * 302.34751 * 4 2 1 30 30 H 1.08991 * 109.47126 * 55.17529 * 7 5 4 31 31 H 1.08998 * 109.46878 * 295.17332 * 7 5 4 32 32 H 0.97005 * 119.99897 * 4.87822 * 12 11 9 33 33 H 1.09005 * 115.54622 * 333.01280 * 17 8 7 34 34 H 1.08993 * 117.50495 * 0.02562 * 18 17 8 35 35 H 1.09005 * 117.49347 * 145.01702 * 18 17 8 36 36 H 1.09002 * 117.49808 * 214.97835 * 19 17 8 37 37 H 1.08998 * 117.49867 * 359.97438 * 19 17 8 38 38 H 1.08994 * 109.52379 * 62.97064 * 20 5 4 39 39 H 1.09001 * 109.52218 * 183.15906 * 20 5 4 40 40 H 1.09004 * 109.47291 * 299.96923 * 23 21 20 41 41 H 1.09004 * 109.47224 * 59.96906 * 23 21 20 42 42 H 1.09005 * 109.47445 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8937 1.0276 0.0000 4 6 2.0406 -0.7222 -1.2495 5 6 3.5711 -0.7707 -1.2121 6 1 3.9691 0.2436 -1.2423 7 6 4.0878 -1.5593 -2.4172 8 7 5.5517 -1.5075 -2.4434 9 6 6.2825 -2.4656 -1.7929 10 1 7.2186 -2.2038 -1.3222 11 6 5.8201 -3.7734 -1.7385 12 7 5.0389 -4.2353 -2.6916 13 14 6.3068 -4.8775 -0.3125 14 1 7.5609 -5.5976 -0.6497 15 1 5.2244 -5.8615 -0.0566 16 1 6.5219 -4.0511 0.9024 17 6 6.2338 -0.4307 -3.1656 18 6 7.7547 -0.5248 -3.3024 19 6 7.1332 0.5044 -2.3549 20 6 4.0196 -1.4588 0.0810 21 6 3.4308 -0.7093 1.2791 22 1 3.8193 0.3090 1.2960 23 6 3.8227 -1.4265 2.5725 24 8 2.0066 -0.6741 1.1665 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5143 0.8897 27 1 -0.3633 0.5134 -0.8903 28 1 1.7149 -0.1842 -2.1398 29 1 1.6444 -1.7373 -1.2721 30 1 3.6923 -1.1223 -3.3340 31 1 3.7624 -2.5966 -2.3392 32 1 4.8435 -3.6864 -3.4672 33 1 5.6792 0.0014 -3.9987 34 1 8.2478 -1.3880 -2.8556 35 1 8.2008 -0.1542 -4.2254 36 1 7.1708 1.5517 -2.6548 37 1 7.2172 0.3187 -1.2842 38 1 3.6645 -2.4892 0.0873 39 1 5.1078 -1.4471 0.1413 40 1 3.4345 -2.4449 2.5552 41 1 4.9090 -1.4531 2.6583 42 1 3.4038 -0.8924 3.4254 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000724865970.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:27:15 Heat of formation + Delta-G solvation = -34.389654 kcal Electronic energy + Delta-G solvation = -20401.444116 eV Core-core repulsion = 17574.619903 eV Total energy + Delta-G solvation = -2826.824213 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.69519 -38.89161 -36.18701 -34.65515 -34.37157 -31.95319 -30.48776 -27.65656 -27.04865 -25.20402 -23.05028 -22.69504 -22.32546 -21.64872 -20.94461 -18.80719 -17.47187 -17.15816 -16.54903 -16.37178 -15.60660 -15.54803 -15.30618 -14.92134 -14.45964 -14.27393 -13.56429 -13.46799 -13.37501 -13.17873 -12.83906 -12.80953 -12.73357 -12.53349 -12.50223 -12.24879 -11.97405 -11.81180 -11.77181 -11.59521 -11.52658 -11.21420 -11.04946 -10.95389 -10.28675 -10.27234 -8.71976 -8.08225 -5.41183 1.53080 1.59433 1.75714 2.60932 2.79884 3.13835 3.27126 3.47913 3.82186 3.90960 4.04771 4.10461 4.20482 4.25339 4.29663 4.39376 4.43521 4.48662 4.58432 4.66501 4.69708 4.75786 4.86268 4.87899 4.93172 4.96520 4.99896 5.09646 5.14417 5.18298 5.24494 5.28109 5.30339 5.39839 5.45997 5.55633 5.65127 5.97481 6.40770 6.43947 7.15193 7.83604 8.26558 9.01366 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.016748 B = 0.009020 C = 0.007412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1671.461132 B = 3103.419099 C = 3776.938765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.086 3.914 3 H 0.062 0.938 4 C -0.137 4.137 5 C -0.090 4.090 6 H 0.058 0.942 7 C 0.148 3.852 8 N -0.574 5.574 9 C -0.328 4.328 10 H 0.039 0.961 11 C -0.056 4.056 12 N -0.929 5.929 13 Si 1.084 2.916 14 H -0.287 1.287 15 H -0.292 1.292 16 H -0.271 1.271 17 C 0.098 3.902 18 C -0.192 4.192 19 C -0.200 4.200 20 C -0.116 4.116 21 C 0.088 3.912 22 H 0.058 0.942 23 C -0.140 4.140 24 O -0.395 6.395 25 H 0.054 0.946 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.050 0.950 30 H 0.034 0.966 31 H 0.049 0.951 32 H 0.256 0.744 33 H 0.099 0.901 34 H 0.071 0.929 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.067 0.933 38 H 0.032 0.968 39 H 0.065 0.935 40 H 0.051 0.949 41 H 0.074 0.926 42 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.070 10.452 4.978 12.639 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.028 3.972 3 H 0.080 0.920 4 C -0.176 4.176 5 C -0.111 4.111 6 H 0.076 0.924 7 C 0.022 3.978 8 N -0.292 5.292 9 C -0.458 4.458 10 H 0.056 0.944 11 C -0.254 4.254 12 N -0.570 5.570 13 Si 0.910 3.090 14 H -0.214 1.214 15 H -0.219 1.219 16 H -0.196 1.196 17 C -0.010 4.010 18 C -0.230 4.230 19 C -0.240 4.240 20 C -0.154 4.154 21 C 0.031 3.969 22 H 0.076 0.924 23 C -0.197 4.197 24 O -0.316 6.316 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.108 0.892 28 H 0.101 0.899 29 H 0.069 0.931 30 H 0.053 0.947 31 H 0.067 0.933 32 H 0.066 0.934 33 H 0.117 0.883 34 H 0.089 0.911 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.085 0.915 38 H 0.051 0.949 39 H 0.084 0.916 40 H 0.070 0.930 41 H 0.093 0.907 42 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -5.422 8.833 5.787 11.871 hybrid contribution 0.797 1.130 -1.164 1.808 sum -4.626 9.964 4.623 11.918 Atomic orbital electron populations 1.21756 0.91523 1.02735 1.03429 1.22194 0.96025 0.94687 0.84245 0.92008 1.22201 0.95230 1.00962 0.99172 1.21563 0.94478 0.98790 0.96225 0.92379 1.20948 0.82858 0.99409 0.94577 1.43617 1.01016 1.26730 1.57824 1.19614 1.06813 0.89476 1.29879 0.94375 1.26640 0.99819 0.96266 1.02713 1.70853 1.40846 1.37770 1.07576 0.83299 0.75809 0.75009 0.74837 1.21354 1.21866 1.19646 1.21381 0.89958 0.93585 0.96120 1.23036 0.97317 1.01207 1.01472 1.23292 1.07893 0.95914 0.96907 1.21952 1.01020 0.97981 0.94457 1.22151 0.80746 0.98429 0.95584 0.92364 1.21742 1.01704 1.00513 0.95752 1.87838 1.21400 1.78641 1.43694 0.92726 0.91235 0.89201 0.89864 0.93141 0.94721 0.93291 0.93399 0.88320 0.91090 0.88006 0.87668 0.91465 0.94928 0.91615 0.92978 0.90745 0.90517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.05 9.57 71.98 0.69 -2.36 16 2 C 0.09 2.44 3.26 30.62 0.10 2.54 16 3 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 4 C -0.14 -4.42 4.71 30.68 0.14 -4.28 16 5 C -0.09 -3.44 2.48 -10.67 -0.03 -3.46 16 6 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 7 C 0.15 6.65 4.40 86.38 0.38 7.03 16 8 N -0.57 -27.33 2.47 -678.05 -1.68 -29.01 16 9 C -0.33 -17.39 6.30 84.03 0.53 -16.86 16 10 H 0.04 2.11 7.03 -2.91 -0.02 2.09 16 11 C -0.06 -3.08 4.81 84.86 0.41 -2.67 16 12 N -0.93 -55.18 12.21 21.65 0.26 -54.91 16 13 Si 1.08 50.89 30.00 68.60 2.06 52.95 16 14 H -0.29 -13.00 7.11 99.48 0.71 -12.30 16 15 H -0.29 -14.02 7.11 99.48 0.71 -13.31 16 16 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 17 C 0.10 4.00 6.58 44.99 0.30 4.30 16 18 C -0.19 -7.39 9.77 30.62 0.30 -7.09 16 19 C -0.20 -7.16 10.30 30.62 0.32 -6.85 16 20 C -0.12 -4.70 4.16 30.69 0.13 -4.57 16 21 C 0.09 2.95 3.26 30.63 0.10 3.05 16 22 H 0.06 1.82 8.14 -2.39 -0.02 1.80 16 23 C -0.14 -4.15 9.56 71.98 0.69 -3.46 16 24 O -0.40 -13.17 10.05 -148.98 -1.50 -14.67 16 25 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.08 2.32 8.14 -2.38 -0.02 2.30 16 29 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.03 1.46 8.06 -2.39 -0.02 1.44 16 31 H 0.05 2.58 5.36 -2.39 -0.01 2.57 16 32 H 0.26 15.49 7.18 -92.70 -0.67 14.83 16 33 H 0.10 3.69 8.13 -2.38 -0.02 3.67 16 34 H 0.07 3.15 6.63 -2.39 -0.02 3.13 16 35 H 0.10 3.32 8.14 -2.38 -0.02 3.30 16 36 H 0.11 3.09 8.14 -2.39 -0.02 3.07 16 37 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.03 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.07 2.96 6.59 -2.39 -0.02 2.95 16 40 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 41 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 42 H 0.08 1.91 8.14 -2.38 -0.02 1.89 16 Total: -1.00 -60.69 326.31 4.26 -56.43 By element: Atomic # 1 Polarization: 22.85 SS G_CDS: 1.06 Total: 23.91 kcal Atomic # 6 Polarization: -38.74 SS G_CDS: 4.05 Total: -34.69 kcal Atomic # 7 Polarization: -82.51 SS G_CDS: -1.41 Total: -83.92 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: -1.50 Total: -14.67 kcal Atomic # 14 Polarization: 50.89 SS G_CDS: 2.06 Total: 52.95 kcal Total: -60.69 4.26 -56.43 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724865970.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.037 kcal (2) G-P(sol) polarization free energy of solvation -60.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds