Wall clock time and date at job start Mon Mar 30 2020 07:02:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09001 * 109.48558 * 2 1 4 4 C 1.53092 * 109.48019 * 239.97457 * 2 1 3 5 5 C 1.53181 * 109.16613 * 182.39673 * 4 2 1 6 6 C 1.52999 * 109.54430 * 176.84917 * 5 4 2 7 7 N 1.46507 * 109.46700 * 175.17795 * 6 5 4 8 8 C 1.36934 * 120.00132 * 269.99481 * 7 6 5 9 9 H 1.07996 * 120.00151 * 140.60605 * 8 7 6 10 10 C 1.38810 * 120.00123 * 320.61428 * 8 7 6 11 11 N 1.31621 * 119.99762 * 340.33668 * 10 8 7 12 12 Si 1.86803 * 120.00082 * 160.34031 * 10 8 7 13 13 H 1.48490 * 109.47117 * 359.97438 * 12 10 8 14 14 H 1.48505 * 109.46793 * 119.99938 * 12 10 8 15 15 H 1.48502 * 109.46941 * 239.99606 * 12 10 8 16 16 C 1.46502 * 119.99581 * 90.00392 * 7 6 5 17 17 C 1.53001 * 117.49887 * 114.60019 * 16 7 6 18 18 C 1.53001 * 60.03236 * 107.49517 * 17 16 7 19 19 C 1.53182 * 109.10753 * 56.93559 * 5 4 2 20 20 C 1.53108 * 109.15551 * 303.15588 * 19 5 4 21 21 H 1.09006 * 109.47845 * 177.50166 * 20 19 5 22 22 C 1.52998 * 109.40602 * 297.48751 * 20 19 5 23 23 O 1.42895 * 109.48855 * 57.47452 * 20 19 5 24 24 H 1.08993 * 109.47466 * 180.02562 * 1 2 3 25 25 H 1.08997 * 109.46982 * 300.02621 * 1 2 3 26 26 H 1.08998 * 109.46911 * 60.02023 * 1 2 3 27 27 H 1.09002 * 109.52079 * 62.49342 * 4 2 1 28 28 H 1.08993 * 109.57798 * 302.33690 * 4 2 1 29 29 H 1.09007 * 109.54317 * 297.03076 * 5 4 2 30 30 H 1.08997 * 109.46897 * 55.18217 * 6 5 4 31 31 H 1.08995 * 109.46955 * 295.17648 * 6 5 4 32 32 H 0.97004 * 119.99814 * 175.03769 * 11 10 8 33 33 H 1.08993 * 115.55386 * 328.92192 * 16 7 6 34 34 H 1.09002 * 117.49688 * 214.99486 * 17 16 7 35 35 H 1.08996 * 117.49934 * 359.97438 * 17 16 7 36 36 H 1.08998 * 117.49780 * 107.50029 * 18 17 16 37 37 H 1.08997 * 117.49987 * 252.52175 * 18 17 16 38 38 H 1.08998 * 109.51746 * 62.96984 * 19 5 4 39 39 H 1.08996 * 109.52228 * 183.16266 * 19 5 4 40 40 H 1.08997 * 109.47240 * 179.97438 * 22 20 19 41 41 H 1.09003 * 109.47500 * 299.99210 * 22 20 19 42 42 H 1.09010 * 109.46978 * 59.99036 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8936 1.0276 0.0000 4 6 2.0405 -0.7222 -1.2496 5 6 3.5711 -0.7706 -1.2124 6 6 4.0877 -1.5591 -2.4175 7 7 5.5516 -1.5070 -2.4439 8 6 6.1889 -0.5005 -3.1191 9 1 7.0770 -0.0488 -2.7026 10 6 5.6933 -0.0607 -4.3389 11 7 4.8772 -0.8260 -5.0321 12 14 6.1849 1.6172 -4.9965 13 1 7.1044 2.2759 -4.0345 14 1 6.8692 1.4552 -6.3045 15 1 4.9712 2.4546 -5.1731 16 6 6.3336 -2.5320 -1.7481 17 6 7.1945 -3.4649 -2.6023 18 6 7.8569 -2.3812 -1.7492 19 6 4.0198 -1.4585 0.0806 20 6 3.4309 -0.7090 1.2788 21 1 3.7104 -1.2200 2.2003 22 6 3.9762 0.7203 1.3023 23 8 2.0068 -0.6741 1.1663 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5142 0.8897 26 1 -0.3633 0.5135 -0.8902 27 1 1.7147 -0.1843 -2.1399 28 1 1.6445 -1.7374 -1.2721 29 1 3.9689 0.2439 -1.2426 30 1 3.6920 -1.1220 -3.3343 31 1 3.7623 -2.5964 -2.3395 32 1 4.4742 -0.4909 -5.8484 33 1 5.8699 -2.9519 -0.8555 34 1 7.2971 -4.4984 -2.2716 35 1 7.1787 -3.3162 -3.6820 36 1 8.3952 -2.7018 -0.8573 37 1 8.2768 -1.5192 -2.2676 38 1 3.6648 -2.4891 0.0869 39 1 5.1080 -1.4466 0.1408 40 1 3.5573 1.2550 2.1548 41 1 5.0625 0.6935 1.3881 42 1 3.6970 1.2309 0.3805 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000724869205.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:02:12 Heat of formation + Delta-G solvation = -17.005557 kcal Electronic energy + Delta-G solvation = -20301.276635 eV Core-core repulsion = 17475.206253 eV Total energy + Delta-G solvation = -2826.070382 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.57343 -37.01057 -34.32341 -33.03750 -32.69195 -30.38445 -29.01961 -26.29964 -25.54362 -23.67282 -22.28937 -21.35441 -20.59805 -19.67539 -18.72441 -16.33280 -15.90002 -15.60208 -15.39241 -14.63757 -14.35555 -14.15917 -13.79374 -13.37754 -12.70346 -12.57700 -12.42692 -12.13444 -11.91324 -11.74010 -11.54555 -11.33401 -11.14851 -10.89321 -10.78377 -10.64158 -10.53269 -10.39656 -10.06732 -9.93679 -9.87296 -9.54003 -9.35265 -9.20694 -8.86184 -8.46259 -6.49345 -5.75992 -3.43394 3.31550 3.41279 3.43371 4.06623 4.43611 4.96582 5.04808 5.16340 5.30226 5.30532 5.40457 5.43250 5.49358 5.55203 5.73688 5.81716 5.90353 5.92678 5.98070 5.98881 6.12233 6.16554 6.25466 6.30856 6.38506 6.40267 6.42441 6.51781 6.58432 6.63370 6.73952 6.84033 6.90310 7.09126 7.25207 7.28724 7.62090 7.66821 7.80471 8.51399 9.17762 9.78947 10.38129 11.17235 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.018263 B = 0.008053 C = 0.006669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1532.790998 B = 3475.964332 C = 4197.230383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.084 3.916 3 H 0.056 0.944 4 C -0.140 4.140 5 C -0.106 4.106 6 C 0.159 3.841 7 N -0.549 5.549 8 C -0.255 4.255 9 H 0.062 0.938 10 C 0.014 3.986 11 N -0.883 5.883 12 Si 0.892 3.108 13 H -0.276 1.276 14 H -0.290 1.290 15 H -0.288 1.288 16 C 0.121 3.879 17 C -0.224 4.224 18 C -0.197 4.197 19 C -0.137 4.137 20 C 0.087 3.913 21 H 0.091 0.909 22 C -0.182 4.182 23 O -0.382 6.382 24 H 0.060 0.940 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.067 0.933 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.093 0.907 31 H 0.024 0.976 32 H 0.253 0.747 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.091 0.909 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.057 0.943 39 H 0.078 0.922 40 H 0.052 0.948 41 H 0.065 0.935 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.662 0.487 9.702 10.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.026 3.974 3 H 0.074 0.926 4 C -0.178 4.178 5 C -0.127 4.127 6 C 0.033 3.967 7 N -0.266 5.266 8 C -0.385 4.385 9 H 0.080 0.920 10 C -0.187 4.187 11 N -0.525 5.525 12 Si 0.721 3.279 13 H -0.200 1.200 14 H -0.216 1.216 15 H -0.214 1.214 16 C 0.012 3.988 17 C -0.265 4.265 18 C -0.236 4.236 19 C -0.174 4.174 20 C 0.030 3.970 21 H 0.109 0.891 22 C -0.240 4.240 23 O -0.302 6.302 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.086 0.914 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.111 0.889 31 H 0.042 0.958 32 H 0.063 0.937 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.109 0.891 36 H 0.090 0.910 37 H 0.114 0.886 38 H 0.076 0.924 39 H 0.097 0.903 40 H 0.071 0.929 41 H 0.084 0.916 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -4.839 0.427 9.624 10.780 hybrid contribution 0.542 0.927 -0.714 1.289 sum -4.297 1.354 8.910 9.984 Atomic orbital electron populations 1.21753 0.93951 1.02501 1.01767 1.22066 0.94060 0.95468 0.85801 0.92605 1.22194 0.97413 1.00956 0.97279 1.21859 0.92750 1.01395 0.96688 1.20891 0.83346 0.95841 0.96643 1.43349 1.00308 1.25305 1.57611 1.19046 1.11541 1.09763 0.98178 0.92012 1.25223 1.00151 0.98515 0.94776 1.70075 1.33469 1.33797 1.15138 0.86407 0.78113 0.84674 0.78690 1.20047 1.21636 1.21427 1.21348 0.88499 0.93399 0.95601 1.23352 1.09969 0.93672 0.99481 1.23019 0.97282 1.01882 1.01371 1.22247 1.01512 0.98953 0.94714 1.22171 0.80616 0.95518 0.98695 0.89126 1.22413 1.01741 0.97628 1.02169 1.87877 1.21148 1.77965 1.43228 0.92097 0.92514 0.91375 0.91397 0.91813 0.91064 0.88931 0.95776 0.93692 0.89435 0.91436 0.89086 0.90957 0.88575 0.92401 0.90332 0.92881 0.91581 0.91579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.57 37.16 0.36 -1.40 16 2 C 0.08 1.24 2.94 -26.68 -0.08 1.17 16 3 H 0.06 0.83 6.34 -51.93 -0.33 0.50 16 4 C -0.14 -2.32 4.71 -26.59 -0.13 -2.44 16 5 C -0.11 -1.99 2.17 -90.43 -0.20 -2.19 16 6 C 0.16 3.56 4.81 -4.04 -0.02 3.54 16 7 N -0.55 -13.08 2.58 -165.62 -0.43 -13.51 16 8 C -0.26 -6.69 8.48 -15.06 -0.13 -6.82 16 9 H 0.06 1.64 6.75 -52.49 -0.35 1.29 16 10 C 0.01 0.37 4.98 -17.43 -0.09 0.29 16 11 N -0.88 -24.76 11.49 55.49 0.64 -24.12 16 12 Si 0.89 21.12 29.60 -169.99 -5.03 16.09 16 13 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 14 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 15 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 16 C 0.12 2.55 5.47 -67.89 -0.37 2.18 16 17 C -0.22 -4.64 10.35 -26.73 -0.28 -4.92 16 18 C -0.20 -3.91 9.80 -26.69 -0.26 -4.17 16 19 C -0.14 -2.29 3.92 -26.58 -0.10 -2.39 16 20 C 0.09 1.31 3.91 -26.68 -0.10 1.21 16 21 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 22 C -0.18 -2.59 8.65 37.16 0.32 -2.27 16 23 O -0.38 -6.09 10.24 -35.23 -0.36 -6.45 16 24 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 28 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 29 H 0.07 1.47 6.62 -51.92 -0.34 1.12 16 30 H 0.09 2.37 5.58 -51.93 -0.29 2.08 16 31 H 0.02 0.53 8.07 -51.93 -0.42 0.11 16 32 H 0.25 6.86 8.32 -40.82 -0.34 6.52 16 33 H 0.09 1.68 6.53 -51.93 -0.34 1.34 16 34 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 35 H 0.09 2.17 8.14 -51.93 -0.42 1.74 16 36 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 37 H 0.10 2.08 6.47 -51.93 -0.34 1.74 16 38 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 39 H 0.08 1.38 6.19 -51.93 -0.32 1.06 16 40 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 42 H 0.07 1.01 4.98 -51.92 -0.26 0.76 16 LS Contribution 318.53 15.07 4.80 4.80 Total: -1.00 -27.57 318.53 -8.66 -36.23 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: -7.20 Total: 5.19 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: -1.07 Total: -18.23 kcal Atomic # 7 Polarization: -37.84 SS G_CDS: 0.21 Total: -37.63 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.36 Total: -6.45 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.03 Total: 16.09 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.57 -8.66 -36.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000724869205.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.220 kcal (2) G-P(sol) polarization free energy of solvation -27.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.348 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds