Wall clock time and date at job start Mon Mar 30 2020 06:04:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50695 * 119.99911 * 2 1 4 4 N 1.46898 * 109.47359 * 123.15649 * 3 2 1 5 5 C 1.46901 * 110.99560 * 293.15025 * 4 3 2 6 6 C 1.50698 * 109.47439 * 288.01526 * 5 4 3 7 7 H 1.08007 * 119.99876 * 3.23722 * 6 5 4 8 8 C 1.37871 * 120.00302 * 183.22540 * 6 5 4 9 9 N 1.31522 * 119.99785 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00318 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46734 * 60.00440 * 10 8 6 12 12 H 1.48494 * 109.47354 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46895 * 300.00495 * 10 8 6 14 14 C 1.46902 * 111.00227 * 57.10507 * 4 3 2 15 15 C 1.53003 * 109.46838 * 76.93646 * 14 4 3 16 16 O 1.42895 * 109.47088 * 299.66210 * 15 14 4 17 17 C 1.53001 * 109.46898 * 179.66223 * 15 14 4 18 18 C 1.52994 * 109.47454 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.46888 * 59.99890 * 18 17 15 20 20 C 1.53000 * 109.47525 * 300.00195 * 19 18 17 21 21 C 1.52998 * 109.47278 * 59.66215 * 15 14 4 22 22 H 1.07997 * 119.99564 * 180.02562 * 1 2 3 23 23 H 1.07994 * 119.99657 * 0.02562 * 1 2 3 24 24 H 1.08003 * 120.00217 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.47580 * 3.15205 * 3 2 1 26 26 H 1.09006 * 109.46834 * 243.15236 * 3 2 1 27 27 H 1.08992 * 109.47311 * 48.02149 * 5 4 3 28 28 H 1.09009 * 109.46889 * 168.02045 * 5 4 3 29 29 H 0.97003 * 119.99445 * 179.97438 * 9 8 6 30 30 H 1.09004 * 109.47042 * 196.93307 * 14 4 3 31 31 H 1.08997 * 109.47058 * 316.93850 * 14 4 3 32 32 H 0.96702 * 114.00097 * 180.02562 * 16 15 14 33 33 H 1.09000 * 109.47001 * 299.99965 * 17 15 14 34 34 H 1.09006 * 109.46874 * 59.99816 * 17 15 14 35 35 H 1.09000 * 109.46847 * 300.00529 * 18 17 15 36 36 H 1.08991 * 109.47766 * 179.97438 * 18 17 15 37 37 H 1.08997 * 109.47365 * 180.02562 * 19 18 17 38 38 H 1.09000 * 109.47126 * 60.00166 * 19 18 17 39 39 H 1.09000 * 109.46895 * 300.00113 * 20 19 18 40 40 H 1.08997 * 109.47458 * 179.97438 * 20 19 18 41 41 H 1.09000 * 109.47074 * 300.00259 * 21 15 14 42 42 H 1.09010 * 109.46729 * 60.00097 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9643 1.3505 1.1594 5 6 2.2038 1.4052 2.4151 6 6 1.5721 2.7656 2.5609 7 1 1.6771 3.4970 1.7732 8 6 0.8599 3.0764 3.6998 9 7 0.7323 2.1858 4.6591 10 14 0.0762 4.7625 3.8803 11 1 -0.8968 4.9764 2.7792 12 1 -0.6269 4.8444 5.1857 13 1 1.1300 5.8071 3.8197 14 6 3.8886 0.2087 1.1531 15 6 4.9972 0.4558 0.1279 16 8 4.4207 0.6008 -1.1715 17 6 5.9646 -0.7296 0.1273 18 6 7.0729 -0.4830 -0.8982 19 6 7.8315 0.7942 -0.5319 20 6 6.8642 1.9796 -0.5313 21 6 5.7558 1.7328 0.4948 22 1 -0.5399 -0.9353 0.0004 23 1 -0.5399 0.9353 -0.0004 24 1 1.8501 -0.9353 0.0004 25 1 1.3566 2.1328 0.0565 26 1 2.6471 1.3876 -0.9170 27 1 1.4252 0.6426 2.4018 28 1 2.8752 1.2245 3.2547 29 1 0.2315 2.4047 5.4606 30 1 4.3289 0.0921 2.1434 31 1 3.3444 -0.6978 0.8883 32 1 5.0670 0.7600 -1.8730 33 1 6.4043 -0.8403 1.1185 34 1 5.4241 -1.6395 -0.1341 35 1 6.6328 -0.3725 -1.8893 36 1 7.7623 -1.3272 -0.8984 37 1 8.6208 0.9702 -1.2627 38 1 8.2716 0.6838 0.4591 39 1 6.4242 2.0900 -1.5224 40 1 7.4046 2.8894 -0.2699 41 1 5.0666 2.5773 0.4953 42 1 6.1956 1.6221 1.4861 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000794742516.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:17 Heat of formation + Delta-G solvation = -41.947227 kcal Electronic energy + Delta-G solvation = -20050.562242 eV Core-core repulsion = 17223.410307 eV Total energy + Delta-G solvation = -2827.151934 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.67535 -36.82267 -34.44928 -32.75180 -32.15247 -30.72288 -30.13021 -27.08306 -25.67815 -23.79876 -22.55232 -21.32395 -20.58142 -19.32128 -18.58356 -17.00730 -16.15995 -15.02274 -14.94779 -14.90791 -14.32696 -14.13396 -13.98287 -13.48341 -13.35585 -12.71931 -12.62305 -12.09565 -12.04143 -11.83906 -11.33630 -11.28686 -11.18334 -10.99346 -10.79398 -10.68509 -10.64267 -10.53791 -10.36172 -10.21932 -9.99594 -9.70871 -9.31093 -9.02811 -8.54692 -8.33937 -7.05752 -5.94335 -3.94375 3.01357 3.37873 3.41528 3.44710 4.48306 4.57755 4.74187 4.81283 4.84718 5.11351 5.28287 5.39765 5.42946 5.56756 5.58141 5.68016 5.69233 5.69819 5.78942 5.89052 5.99186 6.04815 6.15911 6.19980 6.20855 6.35368 6.43270 6.47248 6.57252 6.66280 6.85064 7.04304 7.32216 7.36750 7.45105 7.55915 7.90011 8.01705 8.21100 8.37765 8.66805 9.12943 9.68773 11.16434 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.024510 B = 0.006102 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.096711 B = 4587.412376 C = 5151.666227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.168 4.168 3 C 0.084 3.916 4 N -0.519 5.519 5 C 0.189 3.811 6 C -0.498 4.498 7 H 0.060 0.940 8 C 0.054 3.946 9 N -0.901 5.901 10 Si 0.895 3.105 11 H -0.278 1.278 12 H -0.289 1.289 13 H -0.277 1.277 14 C 0.062 3.938 15 C 0.145 3.855 16 O -0.546 6.546 17 C -0.146 4.146 18 C -0.120 4.120 19 C -0.122 4.122 20 C -0.124 4.124 21 C -0.134 4.134 22 H 0.081 0.919 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.074 0.926 26 H 0.092 0.908 27 H -0.004 1.004 28 H 0.025 0.975 29 H 0.260 0.740 30 H 0.074 0.926 31 H 0.036 0.964 32 H 0.357 0.643 33 H 0.069 0.931 34 H 0.064 0.936 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.057 0.943 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.091 0.909 42 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.247 -4.903 -11.006 16.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.188 4.188 3 C -0.044 4.044 4 N -0.241 5.241 5 C 0.064 3.936 6 C -0.537 4.537 7 H 0.079 0.921 8 C -0.146 4.146 9 N -0.541 5.541 10 Si 0.723 3.277 11 H -0.204 1.204 12 H -0.215 1.215 13 H -0.203 1.203 14 C -0.067 4.067 15 C 0.104 3.896 16 O -0.353 6.353 17 C -0.184 4.184 18 C -0.157 4.157 19 C -0.160 4.160 20 C -0.162 4.162 21 C -0.172 4.172 22 H 0.100 0.900 23 H 0.113 0.887 24 H 0.113 0.887 25 H 0.092 0.908 26 H 0.110 0.890 27 H 0.013 0.987 28 H 0.043 0.957 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.054 0.946 32 H 0.205 0.795 33 H 0.087 0.913 34 H 0.083 0.917 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.080 0.920 39 H 0.077 0.923 40 H 0.080 0.920 41 H 0.109 0.891 42 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 10.906 -4.570 -10.489 15.807 hybrid contribution -0.437 0.048 0.170 0.471 sum 10.469 -4.521 -10.319 15.380 Atomic orbital electron populations 1.23687 0.96177 1.00856 1.02547 1.23628 0.96343 1.00394 0.98452 1.21474 0.94669 0.93195 0.95017 1.62316 1.19191 1.38204 1.04426 1.19780 0.91899 0.96846 0.85103 1.21106 1.31120 0.98780 1.02706 0.92131 1.24962 0.96698 0.97073 0.95899 1.69957 1.42128 1.34276 1.07725 0.86611 0.79423 0.84607 0.77046 1.20366 1.21482 1.20278 1.22114 0.93916 0.93940 0.96757 1.21232 0.92122 0.92707 0.83509 1.86667 1.37067 1.94786 1.16754 1.22210 0.97040 0.99280 0.99918 1.21512 0.97466 0.97712 0.99016 1.21594 0.97855 0.95047 1.01462 1.21606 0.96969 0.97712 0.99870 1.22058 0.97076 0.99790 0.98283 0.90016 0.88650 0.88725 0.90804 0.89008 0.98661 0.95704 0.93058 0.90796 0.94632 0.79480 0.91260 0.91678 0.92100 0.92148 0.92468 0.92011 0.92264 0.92026 0.89079 0.91808 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.64 14.32 29.01 0.42 -3.22 16 2 C -0.17 -3.25 7.62 -36.03 -0.27 -3.52 16 3 C 0.08 1.71 5.37 -4.98 -0.03 1.68 16 4 N -0.52 -11.17 3.80 -237.51 -0.90 -12.07 16 5 C 0.19 4.96 4.62 -4.98 -0.02 4.93 16 6 C -0.50 -14.14 8.55 -34.44 -0.29 -14.44 16 7 H 0.06 1.71 7.44 -52.48 -0.39 1.32 16 8 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 9 N -0.90 -27.16 13.29 55.43 0.74 -26.42 16 10 Si 0.89 22.02 29.54 -169.99 -5.02 17.00 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 13 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 14 C 0.06 1.12 4.17 -3.82 -0.02 1.11 16 15 C 0.15 2.10 0.87 -90.62 -0.08 2.02 16 16 O -0.55 -7.85 9.84 -35.23 -0.35 -8.20 16 17 C -0.15 -1.75 4.94 -26.73 -0.13 -1.88 16 18 C -0.12 -1.16 5.67 -26.73 -0.15 -1.31 16 19 C -0.12 -1.18 5.92 -26.73 -0.16 -1.34 16 20 C -0.12 -1.38 5.67 -26.70 -0.15 -1.53 16 21 C -0.13 -1.93 4.79 -26.71 -0.13 -2.06 16 22 H 0.08 1.36 8.06 -52.49 -0.42 0.94 16 23 H 0.10 1.83 7.84 -52.49 -0.41 1.42 16 24 H 0.09 1.75 6.46 -52.48 -0.34 1.41 16 25 H 0.07 1.65 6.73 -51.93 -0.35 1.30 16 26 H 0.09 1.75 5.41 -51.93 -0.28 1.47 16 27 H 0.00 -0.13 7.00 -51.93 -0.36 -0.49 16 28 H 0.02 0.70 7.67 -51.92 -0.40 0.30 16 29 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 30 H 0.07 1.37 7.62 -51.93 -0.40 0.97 16 31 H 0.04 0.66 5.67 -51.93 -0.29 0.36 16 32 H 0.36 4.01 5.69 45.56 0.26 4.27 16 33 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.55 6.78 -51.93 -0.35 0.20 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.06 0.62 6.78 -51.93 -0.35 0.27 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.09 1.58 7.59 -51.93 -0.39 1.18 16 42 H 0.06 0.94 8.14 -51.92 -0.42 0.52 16 LS Contribution 317.80 15.07 4.79 4.79 Total: -1.00 -29.94 317.80 -8.44 -38.38 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -6.58 Total: 4.62 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: -1.12 Total: -18.10 kcal Atomic # 7 Polarization: -38.32 SS G_CDS: -0.17 Total: -38.49 kcal Atomic # 8 Polarization: -7.85 SS G_CDS: -0.35 Total: -8.20 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -5.02 Total: 17.00 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.94 -8.44 -38.38 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794742516.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.565 kcal (2) G-P(sol) polarization free energy of solvation -29.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.507 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds