Wall clock time and date at job start Mon Mar 30 2020 06:04:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31003 * 1 3 3 C 1.50695 * 119.99911 * 2 1 4 4 N 1.46898 * 109.47359 * 123.15649 * 3 2 1 5 5 C 1.46901 * 110.99560 * 293.15025 * 4 3 2 6 6 C 1.50698 * 109.47439 * 288.01526 * 5 4 3 7 7 H 1.08007 * 119.99876 * 3.23722 * 6 5 4 8 8 C 1.37871 * 120.00302 * 183.22540 * 6 5 4 9 9 N 1.31522 * 119.99785 * 0.02562 * 8 6 5 10 10 Si 1.86803 * 120.00318 * 180.02562 * 8 6 5 11 11 H 1.48497 * 109.46734 * 60.00440 * 10 8 6 12 12 H 1.48494 * 109.47354 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46895 * 300.00495 * 10 8 6 14 14 C 1.46902 * 111.00227 * 57.10507 * 4 3 2 15 15 C 1.53003 * 109.46838 * 76.93646 * 14 4 3 16 16 O 1.42895 * 109.47088 * 299.66210 * 15 14 4 17 17 C 1.53001 * 109.46898 * 179.66223 * 15 14 4 18 18 C 1.52994 * 109.47454 * 179.97438 * 17 15 14 19 19 C 1.52998 * 109.46888 * 59.99890 * 18 17 15 20 20 C 1.53000 * 109.47525 * 300.00195 * 19 18 17 21 21 C 1.52998 * 109.47278 * 59.66215 * 15 14 4 22 22 H 1.07997 * 119.99564 * 180.02562 * 1 2 3 23 23 H 1.07994 * 119.99657 * 0.02562 * 1 2 3 24 24 H 1.08003 * 120.00217 * 179.97438 * 2 1 3 25 25 H 1.09000 * 109.47580 * 3.15205 * 3 2 1 26 26 H 1.09006 * 109.46834 * 243.15236 * 3 2 1 27 27 H 1.08992 * 109.47311 * 48.02149 * 5 4 3 28 28 H 1.09009 * 109.46889 * 168.02045 * 5 4 3 29 29 H 0.97003 * 119.99445 * 179.97438 * 9 8 6 30 30 H 1.09004 * 109.47042 * 196.93307 * 14 4 3 31 31 H 1.08997 * 109.47058 * 316.93850 * 14 4 3 32 32 H 0.96702 * 114.00097 * 180.02562 * 16 15 14 33 33 H 1.09000 * 109.47001 * 299.99965 * 17 15 14 34 34 H 1.09006 * 109.46874 * 59.99816 * 17 15 14 35 35 H 1.09000 * 109.46847 * 300.00529 * 18 17 15 36 36 H 1.08991 * 109.47766 * 179.97438 * 18 17 15 37 37 H 1.08997 * 109.47365 * 180.02562 * 19 18 17 38 38 H 1.09000 * 109.47126 * 60.00166 * 19 18 17 39 39 H 1.09000 * 109.46895 * 300.00113 * 20 19 18 40 40 H 1.08997 * 109.47458 * 179.97438 * 20 19 18 41 41 H 1.09000 * 109.47074 * 300.00259 * 21 15 14 42 42 H 1.09010 * 109.46729 * 60.00097 * 21 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9643 1.3505 1.1594 5 6 2.2038 1.4052 2.4151 6 6 1.5721 2.7656 2.5609 7 1 1.6771 3.4970 1.7732 8 6 0.8599 3.0764 3.6998 9 7 0.7323 2.1858 4.6591 10 14 0.0762 4.7625 3.8803 11 1 -0.8968 4.9764 2.7792 12 1 -0.6269 4.8444 5.1857 13 1 1.1300 5.8071 3.8197 14 6 3.8886 0.2087 1.1531 15 6 4.9972 0.4558 0.1279 16 8 4.4207 0.6008 -1.1715 17 6 5.9646 -0.7296 0.1273 18 6 7.0729 -0.4830 -0.8982 19 6 7.8315 0.7942 -0.5319 20 6 6.8642 1.9796 -0.5313 21 6 5.7558 1.7328 0.4948 22 1 -0.5399 -0.9353 0.0004 23 1 -0.5399 0.9353 -0.0004 24 1 1.8501 -0.9353 0.0004 25 1 1.3566 2.1328 0.0565 26 1 2.6471 1.3876 -0.9170 27 1 1.4252 0.6426 2.4018 28 1 2.8752 1.2245 3.2547 29 1 0.2315 2.4047 5.4606 30 1 4.3289 0.0921 2.1434 31 1 3.3444 -0.6978 0.8883 32 1 5.0670 0.7600 -1.8730 33 1 6.4043 -0.8403 1.1185 34 1 5.4241 -1.6395 -0.1341 35 1 6.6328 -0.3725 -1.8893 36 1 7.7623 -1.3272 -0.8984 37 1 8.6208 0.9702 -1.2627 38 1 8.2716 0.6838 0.4591 39 1 6.4242 2.0900 -1.5224 40 1 7.4046 2.8894 -0.2699 41 1 5.0666 2.5773 0.4953 42 1 6.1956 1.6221 1.4861 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000794742516.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:16 Heat of formation + Delta-G solvation = -60.889495 kcal Electronic energy + Delta-G solvation = -20051.383640 eV Core-core repulsion = 17223.410307 eV Total energy + Delta-G solvation = -2827.973333 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.84701 -38.41199 -35.52060 -34.81932 -33.76857 -31.72603 -31.46645 -29.03081 -27.14464 -25.59526 -23.58263 -22.77978 -22.06740 -20.36818 -20.14699 -18.35676 -18.11327 -16.78178 -16.47268 -16.04095 -15.98278 -15.45888 -15.22011 -14.93757 -14.45136 -14.34761 -14.00205 -13.73644 -13.29236 -13.09422 -12.96539 -12.69907 -12.60261 -12.51530 -12.46455 -12.16057 -12.08627 -11.96340 -11.84896 -11.55791 -11.42070 -11.32719 -10.76374 -10.57461 -10.38256 -10.09057 -8.83934 -8.16256 -6.25263 1.39996 1.42999 1.46504 1.50940 2.41670 3.15339 3.37921 3.45996 3.82449 3.94447 3.99695 4.11631 4.20760 4.32233 4.42332 4.49074 4.61082 4.65615 4.68693 4.74172 4.82579 4.88364 4.90771 5.05589 5.18202 5.22869 5.24362 5.26147 5.31664 5.33001 5.39262 5.49023 5.63738 5.66356 5.68922 5.76172 5.93206 6.13361 6.48989 6.70909 6.90848 7.03565 7.43448 8.94036 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.024510 B = 0.006102 C = 0.005434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1142.096711 B = 4587.412376 C = 5151.666227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.179 4.179 3 C 0.090 3.910 4 N -0.521 5.521 5 C 0.207 3.793 6 C -0.514 4.514 7 H 0.057 0.943 8 C 0.002 3.998 9 N -0.935 5.935 10 Si 0.964 3.036 11 H -0.269 1.269 12 H -0.283 1.283 13 H -0.269 1.269 14 C 0.058 3.942 15 C 0.155 3.845 16 O -0.558 6.558 17 C -0.141 4.141 18 C -0.114 4.114 19 C -0.118 4.118 20 C -0.118 4.118 21 C -0.132 4.132 22 H 0.106 0.894 23 H 0.086 0.914 24 H 0.105 0.895 25 H 0.048 0.952 26 H 0.109 0.891 27 H -0.032 1.032 28 H -0.004 1.004 29 H 0.263 0.737 30 H 0.062 0.938 31 H 0.034 0.966 32 H 0.375 0.625 33 H 0.067 0.933 34 H 0.065 0.935 35 H 0.072 0.928 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.057 0.943 39 H 0.070 0.930 40 H 0.064 0.936 41 H 0.056 0.944 42 H 0.052 0.948 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.300 -4.854 -12.660 18.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.199 4.199 3 C -0.037 4.037 4 N -0.243 5.243 5 C 0.081 3.919 6 C -0.552 4.552 7 H 0.075 0.925 8 C -0.195 4.195 9 N -0.576 5.576 10 Si 0.789 3.211 11 H -0.194 1.194 12 H -0.208 1.208 13 H -0.194 1.194 14 C -0.070 4.070 15 C 0.114 3.886 16 O -0.367 6.367 17 C -0.180 4.180 18 C -0.152 4.152 19 C -0.155 4.155 20 C -0.155 4.155 21 C -0.170 4.170 22 H 0.124 0.876 23 H 0.104 0.896 24 H 0.123 0.877 25 H 0.067 0.933 26 H 0.127 0.873 27 H -0.014 1.014 28 H 0.014 0.986 29 H 0.071 0.929 30 H 0.081 0.919 31 H 0.053 0.947 32 H 0.226 0.774 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.076 0.924 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.074 0.926 42 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 11.981 -4.523 -12.175 17.670 hybrid contribution -0.767 -0.001 0.674 1.021 sum 11.214 -4.525 -11.501 16.688 Atomic orbital electron populations 1.23852 0.96130 1.01600 1.01440 1.23619 0.96665 1.00148 0.99430 1.21400 0.94363 0.93028 0.94945 1.62258 1.18993 1.40237 1.02818 1.19397 0.90742 0.95267 0.86537 1.21389 1.31491 0.99535 1.02834 0.92476 1.25847 0.97100 1.01154 0.95436 1.70086 1.42860 1.36419 1.08265 0.85516 0.78638 0.79634 0.77307 1.19442 1.20837 1.19405 1.22227 0.94285 0.92664 0.97872 1.20989 0.90888 0.94002 0.82704 1.86571 1.38225 1.94893 1.16993 1.22147 0.97161 0.97734 1.00917 1.21506 0.96794 0.98319 0.98533 1.21573 0.97835 0.94111 1.02014 1.21563 0.96124 0.98764 0.99072 1.21974 0.97537 0.98378 0.99105 0.87612 0.89600 0.87668 0.93329 0.87337 1.01382 0.98595 0.92871 0.91945 0.94744 0.77420 0.91451 0.91633 0.90905 0.90477 0.90298 0.92401 0.91117 0.91731 0.92563 0.92906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -7.13 14.32 67.78 0.97 -6.16 16 2 C -0.18 -6.90 7.62 25.64 0.20 -6.71 16 3 C 0.09 3.71 5.37 85.56 0.46 4.17 16 4 N -0.52 -23.16 3.80 -905.36 -3.44 -26.60 16 5 C 0.21 11.35 4.62 85.56 0.40 11.75 16 6 C -0.51 -30.01 8.55 25.60 0.22 -29.79 16 7 H 0.06 3.30 7.44 -2.91 -0.02 3.28 16 8 C 0.00 0.13 5.46 84.65 0.46 0.59 16 9 N -0.94 -57.63 13.29 21.45 0.28 -57.35 16 10 Si 0.96 45.53 29.54 68.60 2.03 47.55 16 11 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 13 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 14 C 0.06 2.15 4.17 86.30 0.36 2.52 16 15 C 0.16 4.37 0.87 -10.79 -0.01 4.36 16 16 O -0.56 -15.10 9.84 -148.98 -1.47 -16.56 16 17 C -0.14 -3.12 4.94 30.59 0.15 -2.97 16 18 C -0.11 -1.83 5.67 30.59 0.17 -1.66 16 19 C -0.12 -1.92 5.92 30.59 0.18 -1.74 16 20 C -0.12 -2.38 5.67 30.61 0.17 -2.21 16 21 C -0.13 -3.77 4.79 30.61 0.15 -3.62 16 22 H 0.11 3.38 8.06 -2.91 -0.02 3.35 16 23 H 0.09 3.33 7.84 -2.91 -0.02 3.31 16 24 H 0.11 3.83 6.46 -2.91 -0.02 3.81 16 25 H 0.05 2.23 6.73 -2.39 -0.02 2.21 16 26 H 0.11 4.10 5.41 -2.38 -0.01 4.08 16 27 H -0.03 -1.87 7.00 -2.39 -0.02 -1.89 16 28 H 0.00 -0.24 7.67 -2.38 -0.02 -0.26 16 29 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 30 H 0.06 2.42 7.62 -2.38 -0.02 2.40 16 31 H 0.03 1.28 5.67 -2.39 -0.01 1.27 16 32 H 0.38 7.34 5.69 -74.06 -0.42 6.92 16 33 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 34 H 0.06 1.46 8.14 -2.38 -0.02 1.44 16 35 H 0.07 1.03 6.78 -2.39 -0.02 1.01 16 36 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.07 1.28 6.78 -2.39 -0.02 1.26 16 40 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.06 1.99 7.59 -2.39 -0.02 1.97 16 42 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 Total: -1.00 -65.73 317.80 1.84 -63.88 By element: Atomic # 1 Polarization: 19.98 SS G_CDS: 0.56 Total: 20.54 kcal Atomic # 6 Polarization: -35.34 SS G_CDS: 3.88 Total: -31.47 kcal Atomic # 7 Polarization: -80.80 SS G_CDS: -3.15 Total: -83.95 kcal Atomic # 8 Polarization: -15.10 SS G_CDS: -1.47 Total: -16.56 kcal Atomic # 14 Polarization: 45.53 SS G_CDS: 2.03 Total: 47.55 kcal Total: -65.73 1.84 -63.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000794742516.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.992 kcal (2) G-P(sol) polarization free energy of solvation -65.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds