Wall clock time and date at job start Mon Mar 30 2020 06:12:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53005 * 109.46770 * 2 1 4 4 H 1.08999 * 109.47200 * 306.22746 * 3 2 1 5 5 N 1.46902 * 109.47028 * 66.22076 * 3 2 1 6 6 C 1.46893 * 111.00313 * 275.42147 * 5 3 2 7 7 H 1.08997 * 109.47473 * 21.07235 * 6 5 3 8 8 C 1.50701 * 109.47344 * 141.07252 * 6 5 3 9 9 H 1.07994 * 119.99983 * 5.98986 * 8 6 5 10 10 C 1.37878 * 120.00261 * 185.99649 * 8 6 5 11 11 N 1.31514 * 120.00014 * 193.93147 * 10 8 6 12 12 Si 1.86802 * 119.99933 * 13.93115 * 10 8 6 13 13 H 1.48495 * 109.47393 * 88.30665 * 12 10 8 14 14 H 1.48500 * 109.46941 * 208.31073 * 12 10 8 15 15 H 1.48506 * 109.46788 * 328.30773 * 12 10 8 16 16 C 1.53005 * 109.47193 * 261.07022 * 6 5 3 17 17 C 1.52998 * 109.46662 * 65.33957 * 16 6 5 18 18 C 1.53000 * 109.47265 * 186.22447 * 3 2 1 19 19 C 1.52992 * 109.47161 * 180.02562 * 18 3 2 20 20 C 1.53000 * 109.47161 * 179.97438 * 19 18 3 21 21 C 1.52997 * 109.47038 * 59.99978 * 20 19 18 22 22 C 1.52998 * 109.46938 * 299.99830 * 21 20 19 23 23 C 1.52993 * 109.47042 * 59.99685 * 18 3 2 24 24 H 1.08997 * 109.47403 * 300.25367 * 1 2 3 25 25 H 1.09002 * 109.46997 * 60.26204 * 1 2 3 26 26 H 1.09002 * 109.46672 * 180.25791 * 1 2 3 27 27 H 1.09001 * 109.47197 * 240.00284 * 2 1 3 28 28 H 1.08992 * 109.47195 * 119.99929 * 2 1 3 29 29 H 1.00900 * 110.99484 * 39.37425 * 5 3 2 30 30 H 0.97001 * 119.99699 * 180.02562 * 11 10 8 31 31 H 1.09005 * 109.47086 * 185.33462 * 16 6 5 32 32 H 1.08997 * 109.46843 * 305.33994 * 16 6 5 33 33 H 1.09005 * 109.46910 * 173.73286 * 17 16 6 34 34 H 1.08999 * 109.47262 * 293.72806 * 17 16 6 35 35 H 1.08995 * 109.47582 * 53.73192 * 17 16 6 36 36 H 1.09005 * 109.46640 * 300.00018 * 18 3 2 37 37 H 1.08999 * 109.47187 * 300.00228 * 19 18 3 38 38 H 1.09006 * 109.46986 * 59.99680 * 19 18 3 39 39 H 1.09005 * 109.46640 * 299.99939 * 20 19 18 40 40 H 1.08998 * 109.47356 * 180.02562 * 20 19 18 41 41 H 1.09005 * 109.47017 * 180.02562 * 21 20 19 42 42 H 1.08997 * 109.47408 * 60.00194 * 21 20 19 43 43 H 1.08999 * 109.47454 * 299.99854 * 22 21 20 44 44 H 1.09004 * 109.47090 * 179.97438 * 22 21 20 45 45 H 1.08998 * 109.47608 * 300.00536 * 23 18 3 46 46 H 1.09005 * 109.47131 * 60.00634 * 23 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.5884 1.9876 -0.8290 5 7 1.6766 2.0904 1.2674 6 6 0.3114 2.6295 1.2107 7 1 -0.2465 2.1240 0.4226 8 6 -0.3731 2.4043 2.5343 9 1 0.1820 1.9986 3.3671 10 6 -1.7080 2.7160 2.6820 11 7 -2.2385 2.7834 3.8835 12 14 -2.7631 3.0425 1.1755 13 1 -3.3348 1.7629 0.6847 14 1 -3.8646 3.9715 1.5345 15 1 -1.9285 3.6529 0.1095 16 6 0.3673 4.1295 0.9143 17 6 0.9408 4.3514 -0.4867 18 6 3.5619 1.4455 -0.1564 19 6 4.0719 2.8880 -0.1558 20 6 5.5939 2.8909 -0.3115 21 6 5.9728 2.2167 -1.6316 22 6 5.4628 0.7742 -1.6322 23 6 3.9403 0.7709 -1.4764 24 1 -0.3634 0.5177 0.8877 25 1 -0.3633 0.5098 -0.8923 26 1 -0.3633 -1.0277 0.0046 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8899 29 1 1.7817 1.4528 2.0424 30 1 -3.1778 3.0024 3.9873 31 1 -0.6380 4.5478 0.9658 32 1 1.0038 4.6217 1.6496 33 1 0.8777 5.4093 -0.7418 34 1 1.9835 4.0343 -0.5069 35 1 0.3698 3.7687 -1.2095 36 1 4.0134 0.9005 0.6727 37 1 3.6204 3.4333 -0.9845 38 1 3.8023 3.3682 0.7849 39 1 6.0450 2.3457 0.5176 40 1 5.9573 3.9185 -0.3106 41 1 7.0572 2.2183 -1.7424 42 1 5.5217 2.7618 -2.4607 43 1 5.9140 0.2289 -0.8032 44 1 5.7323 0.2939 -2.5729 45 1 3.5770 -0.2568 -1.4765 46 1 3.4888 1.3159 -2.3055 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052339177.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:23 Heat of formation + Delta-G solvation = -34.573821 kcal Electronic energy + Delta-G solvation = -20726.128514 eV Core-core repulsion = 18035.129409 eV Total energy + Delta-G solvation = -2690.999105 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.14569 -36.77740 -33.75792 -31.94494 -30.78383 -30.47439 -29.78789 -27.13328 -24.44609 -22.75551 -22.22233 -21.58096 -20.02376 -19.82131 -19.10937 -16.72568 -15.52380 -15.35421 -14.51520 -14.08254 -13.99492 -13.80052 -13.56257 -13.49909 -12.89764 -12.64052 -12.44992 -12.16695 -12.02912 -11.92034 -11.60883 -11.30878 -11.08535 -11.02614 -10.94477 -10.79103 -10.70375 -10.54801 -10.40983 -10.21456 -9.87162 -9.83123 -9.73309 -9.58458 -9.17673 -9.01136 -8.42010 -7.23561 -6.11909 -4.07056 3.27000 3.36790 3.40369 4.40850 4.79964 4.86131 4.94626 5.17058 5.24518 5.26643 5.49711 5.57208 5.61179 5.68106 5.71184 5.74703 5.83294 5.87634 5.91795 6.06027 6.10549 6.12232 6.19786 6.25252 6.26265 6.29612 6.34891 6.38470 6.43779 6.49193 6.55598 6.63343 6.78094 6.82123 6.84044 6.88745 7.00449 7.14427 7.17466 7.51833 7.71941 8.07493 8.45635 8.68696 8.98808 9.54773 11.01135 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.029994 B = 0.006405 C = 0.006002 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.288470 B = 4370.473074 C = 4663.963520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.148 4.148 3 C 0.087 3.913 4 H 0.072 0.928 5 N -0.671 5.671 6 C 0.182 3.818 7 H 0.019 0.981 8 C -0.526 4.526 9 H 0.075 0.925 10 C 0.079 3.921 11 N -0.892 5.892 12 Si 0.857 3.143 13 H -0.280 1.280 14 H -0.289 1.289 15 H -0.249 1.249 16 C -0.110 4.110 17 C -0.157 4.157 18 C -0.071 4.071 19 C -0.106 4.106 20 C -0.121 4.121 21 C -0.118 4.118 22 C -0.117 4.117 23 C -0.117 4.117 24 H 0.094 0.906 25 H 0.043 0.957 26 H 0.040 0.960 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.337 0.663 30 H 0.263 0.737 31 H 0.048 0.952 32 H 0.056 0.944 33 H 0.031 0.969 34 H 0.065 0.935 35 H 0.034 0.966 36 H 0.064 0.936 37 H 0.055 0.945 38 H 0.081 0.919 39 H 0.057 0.943 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.058 0.942 43 H 0.058 0.942 44 H 0.054 0.946 45 H 0.061 0.939 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.241 -2.689 -11.229 16.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.187 4.187 3 C -0.024 4.024 4 H 0.090 0.910 5 N -0.301 5.301 6 C 0.073 3.927 7 H 0.037 0.963 8 C -0.564 4.564 9 H 0.093 0.907 10 C -0.124 4.124 11 N -0.530 5.530 12 Si 0.683 3.317 13 H -0.206 1.206 14 H -0.215 1.215 15 H -0.173 1.173 16 C -0.149 4.149 17 C -0.214 4.214 18 C -0.091 4.091 19 C -0.143 4.143 20 C -0.158 4.158 21 C -0.156 4.156 22 C -0.154 4.154 23 C -0.155 4.155 24 H 0.113 0.887 25 H 0.062 0.938 26 H 0.060 0.940 27 H 0.073 0.927 28 H 0.076 0.924 29 H 0.156 0.844 30 H 0.073 0.927 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.050 0.950 34 H 0.084 0.916 35 H 0.053 0.947 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.100 0.900 39 H 0.076 0.924 40 H 0.073 0.927 41 H 0.071 0.929 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.072 0.928 45 H 0.079 0.921 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 12.355 -2.032 -11.272 16.848 hybrid contribution -1.359 -0.670 -0.681 1.661 sum 10.997 -2.702 -11.953 16.465 Atomic orbital electron populations 1.22172 0.95848 1.00987 1.03866 1.22300 0.96545 0.98732 1.01137 1.21734 0.93785 0.92185 0.94682 0.90964 1.60595 1.27807 1.38977 1.02742 1.19717 0.85262 0.90994 0.96763 0.96316 1.21223 0.95054 1.43627 0.96531 0.90743 1.24886 0.98028 0.94267 0.95243 1.69971 1.13414 1.47983 1.21584 0.87320 0.80603 0.78493 0.85236 1.20624 1.21539 1.17281 1.21882 0.99216 0.99503 0.94257 1.22043 1.01770 0.98918 0.98672 1.21078 0.95428 0.96189 0.96363 1.21529 0.93275 0.96568 1.02927 1.21580 0.97480 0.99768 0.96985 1.21534 0.99649 0.96166 0.98249 1.21518 0.96321 0.96625 1.00954 1.21683 0.95136 1.00568 0.98146 0.88694 0.93789 0.94043 0.92707 0.92370 0.84443 0.92728 0.93393 0.92538 0.95029 0.91610 0.94673 0.91787 0.92613 0.90020 0.92405 0.92667 0.92861 0.92370 0.92296 0.92760 0.92055 0.92404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.04 8.50 37.16 0.32 -2.73 16 2 C -0.15 -2.30 5.22 -26.73 -0.14 -2.44 16 3 C 0.09 1.40 1.10 -67.71 -0.07 1.32 16 4 H 0.07 1.24 5.90 -51.93 -0.31 0.93 16 5 N -0.67 -12.75 5.09 -100.95 -0.51 -13.26 16 6 C 0.18 4.02 0.63 -68.86 -0.04 3.98 16 7 H 0.02 0.44 3.50 -51.93 -0.18 0.25 16 8 C -0.53 -14.02 8.17 -34.44 -0.28 -14.30 16 9 H 0.07 2.17 7.72 -52.49 -0.41 1.76 16 10 C 0.08 2.20 5.35 -17.82 -0.10 2.10 16 11 N -0.89 -26.72 13.96 55.43 0.77 -25.94 16 12 Si 0.86 20.90 25.82 -169.99 -4.39 16.51 16 13 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 14 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 15 H -0.25 -5.75 5.45 56.52 0.31 -5.44 16 16 C -0.11 -2.39 4.91 -26.73 -0.13 -2.53 16 17 C -0.16 -2.88 8.56 37.16 0.32 -2.56 16 18 C -0.07 -0.97 1.96 -90.63 -0.18 -1.15 16 19 C -0.11 -1.44 3.97 -26.74 -0.11 -1.54 16 20 C -0.12 -1.39 5.92 -26.73 -0.16 -1.55 16 21 C -0.12 -1.23 5.92 -26.73 -0.16 -1.39 16 22 C -0.12 -1.22 5.92 -26.70 -0.16 -1.38 16 23 C -0.12 -1.39 4.87 -26.71 -0.13 -1.52 16 24 H 0.09 2.00 4.92 -51.93 -0.26 1.74 16 25 H 0.04 0.76 7.93 -51.93 -0.41 0.35 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.75 6.12 -51.93 -0.32 0.44 16 28 H 0.06 0.90 8.02 -51.93 -0.42 0.49 16 29 H 0.34 6.69 7.64 -39.29 -0.30 6.39 16 30 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 31 H 0.05 1.11 4.93 -51.93 -0.26 0.86 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 33 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 1.12 4.08 -51.93 -0.21 0.90 16 35 H 0.03 0.64 7.84 -51.93 -0.41 0.23 16 36 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.06 0.78 6.58 -51.93 -0.34 0.44 16 38 H 0.08 1.28 7.60 -51.93 -0.39 0.88 16 39 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 45 H 0.06 0.71 6.30 -51.93 -0.33 0.38 16 46 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 LS Contribution 322.49 15.07 4.86 4.86 Total: -1.00 -27.33 322.49 -8.70 -36.03 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: -8.41 Total: 7.50 kcal Atomic # 6 Polarization: -24.67 SS G_CDS: -1.02 Total: -25.69 kcal Atomic # 7 Polarization: -39.47 SS G_CDS: 0.26 Total: -39.21 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -4.39 Total: 16.51 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.33 -8.70 -36.03 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052339177.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.457 kcal (2) G-P(sol) polarization free energy of solvation -27.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.701 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.574 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds