Wall clock time and date at job start Mon Mar 30 2020 06:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 C 1.53006 * 109.47127 * 119.99679 * 2 1 3 5 5 C 1.52997 * 109.47127 * 179.97438 * 4 2 1 6 6 C 1.53000 * 109.47060 * 300.00449 * 5 4 2 7 7 C 1.52996 * 109.47328 * 60.00126 * 6 5 4 8 8 H 1.08992 * 109.47554 * 59.99639 * 7 6 5 9 9 C 1.52997 * 109.46975 * 180.02562 * 7 6 5 10 10 C 1.52995 * 109.47346 * 294.99616 * 9 7 6 11 11 N 1.46899 * 109.47369 * 180.02562 * 10 9 7 12 12 C 1.46909 * 111.00050 * 179.97438 * 11 10 9 13 13 C 1.52997 * 109.47028 * 180.02562 * 12 11 10 14 14 C 1.53000 * 109.47012 * 180.02562 * 13 12 11 15 15 C 1.50703 * 109.47202 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99956 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99850 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00124 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 119.99881 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47369 * 59.99653 * 19 17 15 21 21 H 1.48497 * 109.47467 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47267 * 299.99800 * 19 17 15 23 23 C 1.52997 * 109.47232 * 239.99801 * 2 1 3 24 24 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 25 25 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 26 26 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 27 27 H 1.08998 * 109.46505 * 59.99871 * 4 2 1 28 28 H 1.08996 * 109.46884 * 300.00752 * 4 2 1 29 29 H 1.09002 * 109.47153 * 180.02562 * 5 4 2 30 30 H 1.09001 * 109.46832 * 60.00321 * 5 4 2 31 31 H 1.09004 * 109.46724 * 180.02562 * 6 5 4 32 32 H 1.09001 * 109.47194 * 299.99650 * 6 5 4 33 33 H 1.09004 * 109.47610 * 54.99797 * 9 7 6 34 34 H 1.09001 * 109.47532 * 174.99616 * 9 7 6 35 35 H 1.09003 * 109.47378 * 300.00347 * 10 9 7 36 36 H 1.09000 * 109.46984 * 60.00320 * 10 9 7 37 37 H 1.00895 * 111.00564 * 303.95304 * 11 10 9 38 38 H 1.08994 * 109.47132 * 300.00353 * 12 11 10 39 39 H 1.09001 * 109.46741 * 60.00220 * 12 11 10 40 40 H 1.09007 * 109.47196 * 299.99871 * 13 12 11 41 41 H 1.08992 * 109.47275 * 60.00368 * 13 12 11 42 42 H 1.09007 * 109.46640 * 299.99728 * 14 13 12 43 43 H 1.09002 * 109.47403 * 59.99377 * 14 13 12 44 44 H 0.97003 * 119.99768 * 180.02562 * 18 17 15 45 45 H 1.09002 * 109.47045 * 59.99942 * 23 2 1 46 46 H 1.09001 * 109.47375 * 299.99867 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7218 1.2490 6 6 4.0794 -1.4434 -0.0003 7 6 3.5695 -0.7221 -1.2495 8 1 3.9331 0.3054 -1.2497 9 6 4.0785 -1.4441 -2.4987 10 6 5.6033 -1.3373 -2.5638 11 7 6.0919 -2.0300 -3.7635 12 6 7.5555 -1.9475 -3.8597 13 6 8.0258 -2.6780 -5.1191 14 6 9.5502 -2.5926 -5.2189 15 6 10.0134 -3.3116 -6.4597 16 1 9.2927 -3.7827 -7.1116 17 6 11.3574 -3.3688 -6.7620 18 7 12.2350 -2.7955 -5.9679 19 14 11.9316 -4.2607 -8.2996 20 1 11.3213 -3.6275 -9.4962 21 1 13.4111 -4.1777 -8.3966 22 1 11.5189 -5.6853 -8.2288 23 6 2.0400 -0.7213 -1.2492 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 1.6766 -1.7488 1.2493 28 1 1.6765 -0.2074 2.1392 29 1 3.9333 -1.2360 2.1388 30 1 3.9336 0.3058 1.2488 31 1 5.1695 -1.4441 -0.0002 32 1 3.7158 -2.4709 0.0000 33 1 3.7894 -2.4942 -2.4546 34 1 3.6438 -0.9847 -3.3864 35 1 5.8924 -0.2872 -2.6079 36 1 6.0379 -1.7969 -1.6762 37 1 5.7819 -2.9900 -3.7783 38 1 7.8577 -0.9016 -3.9125 39 1 8.0040 -2.4114 -2.9812 40 1 7.7235 -3.7240 -5.0667 41 1 7.5773 -2.2137 -5.9973 42 1 9.8528 -1.5467 -5.2712 43 1 9.9985 -3.0570 -4.3406 44 1 13.1805 -2.8355 -6.1809 45 1 1.6766 -0.2075 -2.1392 46 1 1.6767 -1.7490 -1.2492 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070532552.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:02 Heat of formation + Delta-G solvation = -78.594808 kcal Electronic energy + Delta-G solvation = -18349.815299 eV Core-core repulsion = 15656.907301 eV Total energy + Delta-G solvation = -2692.907998 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.06671 -37.90135 -35.83215 -34.53957 -33.04362 -32.35516 -29.41032 -27.40795 -27.07847 -24.49643 -23.22637 -22.87325 -21.99271 -20.87332 -20.61445 -18.47946 -17.04893 -16.58953 -16.26793 -15.84800 -15.66229 -15.46563 -15.12050 -14.68183 -14.49658 -14.31377 -14.05382 -13.68127 -13.34147 -13.22658 -12.89456 -12.77106 -12.68251 -12.57852 -12.47506 -12.25710 -12.12281 -11.94931 -11.82209 -11.60016 -11.47282 -11.40103 -11.28031 -11.17090 -10.78780 -10.75191 -10.55519 -9.34939 -8.20451 -6.31878 1.39818 1.43471 1.51397 2.40958 3.12291 3.20489 3.76210 3.81803 3.87607 4.06548 4.18959 4.25731 4.30962 4.41639 4.45168 4.51291 4.56841 4.62612 4.69912 4.71492 4.79155 4.81063 4.85454 4.95625 4.97447 5.01853 5.07355 5.09737 5.17385 5.22363 5.23691 5.25677 5.33480 5.38842 5.45568 5.49785 5.51105 5.53311 5.67371 5.73707 5.84766 6.07392 6.26598 6.50183 6.84737 7.37271 8.91354 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.062811 B = 0.002512 C = 0.002451 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 445.674373 B =11144.784095 C =11422.094828 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 H 0.065 0.935 4 C -0.111 4.111 5 C -0.120 4.120 6 C -0.116 4.116 7 C -0.080 4.080 8 H 0.065 0.935 9 C -0.103 4.103 10 C 0.058 3.942 11 N -0.695 5.695 12 C 0.072 3.928 13 C -0.092 4.092 14 C 0.025 3.975 15 C -0.545 4.545 16 H 0.060 0.940 17 C -0.003 4.003 18 N -0.934 5.934 19 Si 0.968 3.032 20 H -0.267 1.267 21 H -0.282 1.282 22 H -0.266 1.266 23 C -0.104 4.104 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.055 0.945 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.059 0.941 31 H 0.055 0.945 32 H 0.060 0.940 33 H 0.063 0.937 34 H 0.065 0.935 35 H 0.062 0.938 36 H 0.031 0.969 37 H 0.343 0.657 38 H 0.059 0.941 39 H 0.021 0.979 40 H 0.051 0.949 41 H 0.052 0.948 42 H -0.010 1.010 43 H -0.009 1.009 44 H 0.264 0.736 45 H 0.061 0.939 46 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.322 4.426 14.493 27.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.111 4.111 3 H 0.084 0.916 4 C -0.149 4.149 5 C -0.157 4.157 6 C -0.154 4.154 7 C -0.100 4.100 8 H 0.084 0.916 9 C -0.140 4.140 10 C -0.071 4.071 11 N -0.326 5.326 12 C -0.058 4.058 13 C -0.130 4.130 14 C -0.013 4.013 15 C -0.583 4.583 16 H 0.078 0.922 17 C -0.201 4.201 18 N -0.574 5.574 19 Si 0.792 3.208 20 H -0.192 1.192 21 H -0.207 1.207 22 H -0.191 1.191 23 C -0.142 4.142 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.074 0.926 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.078 0.922 31 H 0.074 0.926 32 H 0.079 0.921 33 H 0.082 0.918 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.049 0.951 37 H 0.161 0.839 38 H 0.077 0.923 39 H 0.040 0.960 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.009 0.991 43 H 0.009 0.991 44 H 0.073 0.927 45 H 0.080 0.920 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -23.254 5.001 14.110 27.656 hybrid contribution 1.164 -0.899 0.000 1.471 sum -22.090 4.102 14.109 26.531 Atomic orbital electron populations 1.21816 0.94715 1.01905 1.01880 1.21134 0.95812 0.99367 0.94775 0.91630 1.21579 0.95068 1.00651 0.97582 1.21535 0.96050 1.00594 0.97545 1.21636 1.00012 0.99339 0.94367 1.21069 0.95810 0.99310 0.93765 0.91614 1.21522 0.93353 1.01020 0.98143 1.22057 0.96114 0.98778 0.90128 1.60483 1.10100 1.20991 1.41053 1.21824 0.87387 0.99927 0.96614 1.21377 0.95823 0.99023 0.96805 1.18978 0.92026 0.95001 0.95302 1.21674 0.92672 1.34723 1.09191 0.92179 1.26031 0.97095 0.96488 1.00466 1.70097 1.02138 1.45666 1.39540 0.85460 0.76988 0.79209 0.79152 1.19155 1.20748 1.19066 1.21590 0.94109 1.00770 0.97734 0.92667 0.92303 0.92618 0.92104 0.91601 0.91811 0.92229 0.92642 0.92131 0.91795 0.91603 0.91973 0.95112 0.83859 0.92272 0.96042 0.93038 0.92914 0.99120 0.99110 0.92738 0.91981 0.92010 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 9.19 71.98 0.66 -0.97 16 2 C -0.09 -1.20 2.72 -10.79 -0.03 -1.23 16 3 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 4 C -0.11 -1.41 5.20 30.60 0.16 -1.25 16 5 C -0.12 -1.70 5.92 30.59 0.18 -1.51 16 6 C -0.12 -1.88 4.96 30.59 0.15 -1.73 16 7 C -0.08 -1.33 2.19 -10.81 -0.02 -1.36 16 8 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 9 C -0.10 -1.99 4.94 30.59 0.15 -1.84 16 10 C 0.06 1.41 5.44 86.30 0.47 1.88 16 11 N -0.70 -20.54 6.50 -513.88 -3.34 -23.88 16 12 C 0.07 2.59 5.69 86.30 0.49 3.08 16 13 C -0.09 -3.97 5.41 30.59 0.17 -3.81 16 14 C 0.02 1.34 4.97 29.85 0.15 1.49 16 15 C -0.54 -31.95 9.11 25.60 0.23 -31.72 16 16 H 0.06 3.37 7.74 -2.91 -0.02 3.35 16 17 C 0.00 -0.19 5.46 84.65 0.46 0.27 16 18 N -0.93 -58.04 13.29 21.45 0.28 -57.76 16 19 Si 0.97 45.04 29.54 68.60 2.03 47.07 16 20 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 22 H -0.27 -11.82 7.11 99.48 0.71 -11.12 16 23 C -0.10 -1.51 4.48 30.58 0.14 -1.38 16 24 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 25 H 0.06 0.59 8.14 -2.38 -0.02 0.57 16 26 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.05 1.00 6.57 -2.39 -0.02 0.98 16 32 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 33 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 36 H 0.03 0.74 6.57 -2.39 -0.02 0.72 16 37 H 0.34 9.33 8.73 -89.70 -0.78 8.55 16 38 H 0.06 2.21 8.14 -2.39 -0.02 2.19 16 39 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 40 H 0.05 2.13 8.14 -2.38 -0.02 2.11 16 41 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 42 H -0.01 -0.57 8.14 -2.38 -0.02 -0.58 16 43 H -0.01 -0.55 8.14 -2.39 -0.02 -0.57 16 44 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 45 H 0.06 0.90 8.14 -2.39 -0.02 0.89 16 46 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 Total: -1.00 -63.40 355.23 2.43 -60.97 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: 0.11 Total: 13.67 kcal Atomic # 6 Polarization: -43.42 SS G_CDS: 3.36 Total: -40.07 kcal Atomic # 7 Polarization: -78.59 SS G_CDS: -3.06 Total: -81.64 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -63.40 2.43 -60.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070532552.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.625 kcal (2) G-P(sol) polarization free energy of solvation -63.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.029 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.970 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds