Wall clock time and date at job start Mon Mar 30 2020 07:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46958 * 2 1 4 4 N 1.46901 * 109.47296 * 240.00101 * 2 1 3 5 5 C 1.46899 * 110.99938 * 327.15785 * 4 2 1 6 6 C 1.50699 * 109.47113 * 291.10683 * 5 4 2 7 7 H 1.07997 * 120.00012 * 4.95734 * 6 5 4 8 8 C 1.37872 * 120.00167 * 184.96199 * 6 5 4 9 9 N 1.31515 * 119.99997 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 120.00312 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.46823 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47053 * 119.99579 * 10 8 6 13 13 H 1.48498 * 109.47225 * 239.99797 * 10 8 6 14 14 C 1.46898 * 111.00019 * 91.11044 * 4 2 1 15 15 C 1.52998 * 109.47345 * 289.17858 * 14 4 2 16 16 C 1.52998 * 109.47536 * 180.02562 * 15 14 4 17 17 H 1.08999 * 109.46769 * 299.99832 * 16 15 14 18 18 C 1.52998 * 109.47536 * 180.02562 * 16 15 14 19 19 C 1.53004 * 109.47173 * 59.99344 * 16 15 14 20 20 C 1.52998 * 109.47378 * 300.00331 * 19 16 15 21 21 H 1.08994 * 109.47345 * 179.97438 * 20 19 16 22 22 C 1.52997 * 109.47083 * 300.00369 * 20 19 16 23 23 C 1.53001 * 109.47207 * 169.17724 * 14 4 2 24 24 H 1.08999 * 109.47095 * 56.58722 * 1 2 3 25 25 H 1.08997 * 109.47588 * 296.58288 * 1 2 3 26 26 H 1.09003 * 109.47177 * 176.58095 * 1 2 3 27 27 H 1.08995 * 109.47375 * 119.99792 * 2 1 3 28 28 H 1.09002 * 109.47150 * 65.70618 * 3 2 1 29 29 H 1.08996 * 109.46961 * 185.70723 * 3 2 1 30 30 H 1.09005 * 109.46840 * 305.70821 * 3 2 1 31 31 H 1.09002 * 109.47387 * 51.10575 * 5 4 2 32 32 H 1.09003 * 109.47263 * 171.10854 * 5 4 2 33 33 H 0.96998 * 120.00077 * 180.02562 * 9 8 6 34 34 H 1.08999 * 109.47074 * 49.17760 * 14 4 2 35 35 H 1.09007 * 109.46756 * 300.00189 * 15 14 4 36 36 H 1.09002 * 109.47181 * 59.99520 * 15 14 4 37 37 H 1.08999 * 109.46954 * 299.99718 * 18 16 15 38 38 H 1.09002 * 109.47181 * 59.99264 * 18 16 15 39 39 H 1.09000 * 109.47131 * 180.02562 * 18 16 15 40 40 H 1.08996 * 109.46737 * 180.02562 * 19 16 15 41 41 H 1.08999 * 109.46875 * 60.00553 * 19 16 15 42 42 H 1.08999 * 109.46830 * 179.97438 * 22 20 19 43 43 H 1.09000 * 109.46730 * 299.99383 * 22 20 19 44 44 H 1.08994 * 109.47646 * 59.99430 * 22 20 19 45 45 H 1.08999 * 109.47002 * 300.00233 * 23 14 4 46 46 H 1.08999 * 109.47075 * 60.00036 * 23 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 1.1089 -1.7768 -1.5900 6 6 1.1707 -2.8788 -0.5640 7 1 1.7594 -2.7499 0.3322 8 6 0.4758 -4.0518 -0.7695 9 7 -0.2415 -4.2087 -1.8606 10 14 0.5529 -5.4182 0.5020 11 1 1.4221 -4.9964 1.6297 12 1 -0.8141 -5.7005 1.0088 13 1 1.1125 -6.6440 -0.1220 14 6 2.2203 0.2513 -2.3072 15 6 0.8613 0.7309 -2.8210 16 6 1.0701 1.7133 -3.9751 17 1 1.6482 2.5682 -3.6244 18 6 -0.2889 2.1935 -4.4885 19 6 1.8266 1.0163 -5.1077 20 6 3.1856 0.5367 -4.5939 21 1 3.7243 0.0397 -5.4007 22 6 3.9970 1.7367 -4.1016 23 6 2.9769 -0.4453 -3.4400 24 1 -0.3633 0.5659 -0.8578 25 1 -0.3634 0.4598 0.9190 26 1 -0.3634 -1.0259 -0.0613 27 1 1.8934 -0.5138 0.8899 28 1 1.7624 1.9260 0.9367 29 1 3.1251 1.4442 -0.1022 30 1 1.5955 1.9850 -0.8345 31 1 0.0906 -1.3924 -1.6494 32 1 1.4066 -2.1688 -2.5626 33 1 -0.7307 -5.0337 -2.0050 34 1 2.7982 1.1061 -1.9560 35 1 0.2833 -0.1240 -3.1721 36 1 0.3222 1.2271 -2.0139 37 1 -0.8674 1.3388 -4.8391 38 1 -0.8274 2.6902 -3.6814 39 1 -0.1400 2.8930 -5.3110 40 1 1.9757 1.7164 -5.9297 41 1 1.2485 0.1614 -5.4585 42 1 4.9650 1.3950 -3.7351 43 1 4.1458 2.4366 -4.9238 44 1 3.4581 2.2333 -3.2947 45 1 3.9450 -0.7870 -3.0739 46 1 2.3989 -1.3001 -3.7911 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084948320.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:05 Heat of formation + Delta-G solvation = -10.408473 kcal Electronic energy + Delta-G solvation = -21032.110385 eV Core-core repulsion = 18342.159168 eV Total energy + Delta-G solvation = -2689.951217 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.90392 -36.80425 -32.95842 -32.68936 -31.14290 -29.23842 -26.95445 -26.53700 -25.98821 -25.65682 -22.35033 -21.38394 -20.92437 -18.62329 -17.90752 -16.15583 -15.48717 -15.10426 -14.73892 -14.28156 -13.94644 -13.68418 -13.55334 -13.44343 -12.89585 -12.65026 -12.15633 -11.96443 -11.87582 -11.69850 -11.55078 -11.18542 -11.09580 -11.01545 -10.98172 -10.78786 -10.63757 -10.58319 -10.48494 -10.27075 -10.05636 -9.86154 -9.64238 -9.35656 -9.25556 -8.92899 -8.34202 -6.96361 -5.96319 -3.95919 3.33563 3.41398 3.46364 4.47678 4.87152 4.95443 5.06711 5.25138 5.38825 5.41927 5.47849 5.56490 5.62422 5.71864 5.78781 5.83790 5.86605 5.91347 5.96802 6.02125 6.10611 6.14076 6.16126 6.20895 6.23050 6.28855 6.34705 6.37990 6.44825 6.51121 6.57378 6.64307 6.70676 6.75360 6.92086 6.98646 7.04343 7.22477 7.47488 7.55209 7.91547 8.24512 8.39535 8.70811 9.12889 9.67625 11.13980 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.023110 B = 0.006818 C = 0.006458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.315927 B = 4105.676298 C = 4334.420123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.091 3.909 3 C -0.156 4.156 4 N -0.528 5.528 5 C 0.183 3.817 6 C -0.499 4.499 7 H 0.059 0.941 8 C 0.054 3.946 9 N -0.899 5.899 10 Si 0.891 3.109 11 H -0.273 1.273 12 H -0.286 1.286 13 H -0.285 1.285 14 C 0.081 3.919 15 C -0.155 4.155 16 C -0.089 4.089 17 H 0.065 0.935 18 C -0.146 4.146 19 C -0.107 4.107 20 C -0.090 4.090 21 H 0.064 0.936 22 C -0.147 4.147 23 C -0.106 4.106 24 H 0.052 0.948 25 H 0.036 0.964 26 H 0.091 0.909 27 H 0.073 0.927 28 H 0.046 0.954 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.005 0.995 32 H 0.032 0.968 33 H 0.258 0.742 34 H 0.077 0.923 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.053 0.947 38 H 0.050 0.950 39 H 0.047 0.953 40 H 0.053 0.947 41 H 0.061 0.939 42 H 0.051 0.949 43 H 0.045 0.955 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.532 12.821 -3.891 13.856 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.018 4.018 3 C -0.214 4.214 4 N -0.250 5.250 5 C 0.059 3.941 6 C -0.537 4.537 7 H 0.078 0.922 8 C -0.146 4.146 9 N -0.539 5.539 10 Si 0.720 3.280 11 H -0.198 1.198 12 H -0.213 1.213 13 H -0.212 1.212 14 C -0.028 4.028 15 C -0.194 4.194 16 C -0.108 4.108 17 H 0.083 0.917 18 C -0.204 4.204 19 C -0.144 4.144 20 C -0.109 4.109 21 H 0.082 0.918 22 C -0.204 4.204 23 C -0.143 4.143 24 H 0.071 0.929 25 H 0.055 0.945 26 H 0.110 0.890 27 H 0.091 0.909 28 H 0.065 0.935 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.023 0.977 32 H 0.050 0.950 33 H 0.068 0.932 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.087 0.913 37 H 0.073 0.927 38 H 0.069 0.931 39 H 0.066 0.934 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.078 0.922 45 H 0.081 0.919 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.887 12.461 -3.840 13.606 hybrid contribution -0.906 -0.559 0.423 1.145 sum 2.982 11.902 -3.417 12.736 Atomic orbital electron populations 1.22784 0.97867 1.04522 0.99813 1.21420 0.92914 0.92149 0.95306 1.22208 1.01024 0.97340 1.00818 1.62634 1.49827 1.09942 1.02640 1.19942 0.89846 0.87576 0.96786 1.21226 1.27847 0.99320 1.05354 0.92229 1.24954 0.95730 0.98360 0.95572 1.69963 1.31584 1.26455 1.25924 0.86540 0.77559 0.82175 0.81739 1.19770 1.21273 1.21164 1.21817 0.94319 0.95151 0.91538 1.22676 0.99994 0.99283 0.97417 1.21133 0.95633 0.98108 0.95958 0.91664 1.21833 0.97373 1.00777 1.00372 1.21597 0.95946 0.99808 0.97090 1.21087 0.95608 0.96246 0.97955 0.91800 1.21915 0.99763 0.97911 1.00831 1.21590 1.00806 0.97755 0.94183 0.92923 0.94510 0.88993 0.90937 0.93456 0.92581 0.92638 0.97738 0.94971 0.93186 0.90537 0.91131 0.91314 0.92743 0.93128 0.93354 0.92863 0.92030 0.92989 0.93567 0.92189 0.91859 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.69 7.72 37.16 0.29 -3.40 16 2 C 0.09 1.73 2.89 -67.71 -0.20 1.53 16 3 C -0.16 -2.40 7.77 37.16 0.29 -2.11 16 4 N -0.53 -11.06 4.65 -220.15 -1.02 -12.08 16 5 C 0.18 4.58 3.08 -4.98 -0.02 4.57 16 6 C -0.50 -13.80 7.86 -34.44 -0.27 -14.07 16 7 H 0.06 1.67 7.44 -52.49 -0.39 1.28 16 8 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 9 N -0.90 -26.45 13.29 55.43 0.74 -25.71 16 10 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 11 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 12 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 C 0.08 1.41 1.41 -67.71 -0.10 1.31 16 15 C -0.16 -2.57 2.79 -26.73 -0.07 -2.65 16 16 C -0.09 -1.22 2.44 -90.62 -0.22 -1.44 16 17 H 0.07 0.84 6.43 -51.93 -0.33 0.51 16 18 C -0.15 -1.83 9.20 37.16 0.34 -1.48 16 19 C -0.11 -1.43 4.73 -26.73 -0.13 -1.56 16 20 C -0.09 -1.24 3.19 -90.65 -0.29 -1.53 16 21 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 22 C -0.15 -1.77 8.50 37.16 0.32 -1.46 16 23 C -0.11 -1.81 4.70 -26.75 -0.13 -1.93 16 24 H 0.05 0.97 4.77 -51.93 -0.25 0.72 16 25 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.09 2.12 5.38 -51.93 -0.28 1.84 16 27 H 0.07 1.49 7.86 -51.93 -0.41 1.08 16 28 H 0.05 0.65 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.84 7.54 -51.93 -0.39 0.44 16 30 H 0.05 0.81 5.32 -51.93 -0.28 0.54 16 31 H 0.01 0.13 4.60 -51.93 -0.24 -0.11 16 32 H 0.03 0.88 6.05 -51.93 -0.31 0.57 16 33 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 34 H 0.08 1.24 3.78 -51.93 -0.20 1.04 16 35 H 0.07 1.38 6.61 -51.92 -0.34 1.04 16 36 H 0.07 1.15 3.86 -51.93 -0.20 0.95 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 40 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 41 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 43 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.74 4.81 -51.93 -0.25 0.49 16 45 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 46 H 0.07 1.36 6.35 -51.93 -0.33 1.03 16 LS Contribution 319.23 15.07 4.81 4.81 Total: -1.00 -28.16 319.23 -8.76 -36.92 By element: Atomic # 1 Polarization: 10.09 SS G_CDS: -7.99 Total: 2.11 kcal Atomic # 6 Polarization: -22.50 SS G_CDS: -0.28 Total: -22.78 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: -0.29 Total: -37.80 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.16 -8.76 -36.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084948320.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.513 kcal (2) G-P(sol) polarization free energy of solvation -28.157 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds