Wall clock time and date at job start Mon Mar 30 2020 07:06:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46958 * 2 1 4 4 N 1.46901 * 109.47296 * 240.00101 * 2 1 3 5 5 C 1.46899 * 110.99938 * 327.15785 * 4 2 1 6 6 C 1.50699 * 109.47113 * 291.10683 * 5 4 2 7 7 H 1.07997 * 120.00012 * 4.95734 * 6 5 4 8 8 C 1.37872 * 120.00167 * 184.96199 * 6 5 4 9 9 N 1.31515 * 119.99997 * 359.97438 * 8 6 5 10 10 Si 1.86807 * 120.00312 * 179.97438 * 8 6 5 11 11 H 1.48495 * 109.46823 * 359.97438 * 10 8 6 12 12 H 1.48502 * 109.47053 * 119.99579 * 10 8 6 13 13 H 1.48498 * 109.47225 * 239.99797 * 10 8 6 14 14 C 1.46898 * 111.00019 * 91.11044 * 4 2 1 15 15 C 1.52998 * 109.47345 * 289.17858 * 14 4 2 16 16 C 1.52998 * 109.47536 * 180.02562 * 15 14 4 17 17 H 1.08999 * 109.46769 * 299.99832 * 16 15 14 18 18 C 1.52998 * 109.47536 * 180.02562 * 16 15 14 19 19 C 1.53004 * 109.47173 * 59.99344 * 16 15 14 20 20 C 1.52998 * 109.47378 * 300.00331 * 19 16 15 21 21 H 1.08994 * 109.47345 * 179.97438 * 20 19 16 22 22 C 1.52997 * 109.47083 * 300.00369 * 20 19 16 23 23 C 1.53001 * 109.47207 * 169.17724 * 14 4 2 24 24 H 1.08999 * 109.47095 * 56.58722 * 1 2 3 25 25 H 1.08997 * 109.47588 * 296.58288 * 1 2 3 26 26 H 1.09003 * 109.47177 * 176.58095 * 1 2 3 27 27 H 1.08995 * 109.47375 * 119.99792 * 2 1 3 28 28 H 1.09002 * 109.47150 * 65.70618 * 3 2 1 29 29 H 1.08996 * 109.46961 * 185.70723 * 3 2 1 30 30 H 1.09005 * 109.46840 * 305.70821 * 3 2 1 31 31 H 1.09002 * 109.47387 * 51.10575 * 5 4 2 32 32 H 1.09003 * 109.47263 * 171.10854 * 5 4 2 33 33 H 0.96998 * 120.00077 * 180.02562 * 9 8 6 34 34 H 1.08999 * 109.47074 * 49.17760 * 14 4 2 35 35 H 1.09007 * 109.46756 * 300.00189 * 15 14 4 36 36 H 1.09002 * 109.47181 * 59.99520 * 15 14 4 37 37 H 1.08999 * 109.46954 * 299.99718 * 18 16 15 38 38 H 1.09002 * 109.47181 * 59.99264 * 18 16 15 39 39 H 1.09000 * 109.47131 * 180.02562 * 18 16 15 40 40 H 1.08996 * 109.46737 * 180.02562 * 19 16 15 41 41 H 1.08999 * 109.46875 * 60.00553 * 19 16 15 42 42 H 1.08999 * 109.46830 * 179.97438 * 22 20 19 43 43 H 1.09000 * 109.46730 * 299.99383 * 22 20 19 44 44 H 1.08994 * 109.47646 * 59.99430 * 22 20 19 45 45 H 1.08999 * 109.47002 * 300.00233 * 23 14 4 46 46 H 1.08999 * 109.47075 * 60.00036 * 23 14 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 1.1089 -1.7768 -1.5900 6 6 1.1707 -2.8788 -0.5640 7 1 1.7594 -2.7499 0.3322 8 6 0.4758 -4.0518 -0.7695 9 7 -0.2415 -4.2087 -1.8606 10 14 0.5529 -5.4182 0.5020 11 1 1.4221 -4.9964 1.6297 12 1 -0.8141 -5.7005 1.0088 13 1 1.1125 -6.6440 -0.1220 14 6 2.2203 0.2513 -2.3072 15 6 0.8613 0.7309 -2.8210 16 6 1.0701 1.7133 -3.9751 17 1 1.6482 2.5682 -3.6244 18 6 -0.2889 2.1935 -4.4885 19 6 1.8266 1.0163 -5.1077 20 6 3.1856 0.5367 -4.5939 21 1 3.7243 0.0397 -5.4007 22 6 3.9970 1.7367 -4.1016 23 6 2.9769 -0.4453 -3.4400 24 1 -0.3633 0.5659 -0.8578 25 1 -0.3634 0.4598 0.9190 26 1 -0.3634 -1.0259 -0.0613 27 1 1.8934 -0.5138 0.8899 28 1 1.7624 1.9260 0.9367 29 1 3.1251 1.4442 -0.1022 30 1 1.5955 1.9850 -0.8345 31 1 0.0906 -1.3924 -1.6494 32 1 1.4066 -2.1688 -2.5626 33 1 -0.7307 -5.0337 -2.0050 34 1 2.7982 1.1061 -1.9560 35 1 0.2833 -0.1240 -3.1721 36 1 0.3222 1.2271 -2.0139 37 1 -0.8674 1.3388 -4.8391 38 1 -0.8274 2.6902 -3.6814 39 1 -0.1400 2.8930 -5.3110 40 1 1.9757 1.7164 -5.9297 41 1 1.2485 0.1614 -5.4585 42 1 4.9650 1.3950 -3.7351 43 1 4.1458 2.4366 -4.9238 44 1 3.4581 2.2333 -3.2947 45 1 3.9450 -0.7870 -3.0739 46 1 2.3989 -1.3001 -3.7911 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084948320.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:05 Heat of formation + Delta-G solvation = -26.430486 kcal Electronic energy + Delta-G solvation = -21032.805151 eV Core-core repulsion = 18342.159168 eV Total energy + Delta-G solvation = -2690.645983 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.31595 -38.21391 -34.84110 -34.08212 -32.58913 -30.94923 -28.46518 -27.58121 -27.50212 -27.20163 -24.26398 -22.78069 -22.15284 -19.98600 -19.41652 -18.18547 -17.05437 -16.60998 -16.34363 -15.78263 -15.38117 -15.08311 -14.96792 -14.77759 -14.24996 -14.09678 -13.78878 -13.32027 -13.09141 -13.03461 -12.89754 -12.72529 -12.68086 -12.54782 -12.51856 -12.25705 -12.19072 -11.99940 -11.90178 -11.69943 -11.51421 -11.36492 -11.18920 -11.04676 -10.77756 -10.52541 -10.44864 -8.68947 -8.14595 -6.22491 1.37602 1.38807 1.51545 2.41372 3.16009 3.40750 3.77072 3.88820 4.01267 4.19334 4.25369 4.29480 4.35976 4.46256 4.49854 4.55755 4.69203 4.70110 4.78002 4.83346 4.85086 4.87814 4.88994 5.00450 5.02786 5.06145 5.13134 5.18298 5.21282 5.25926 5.29275 5.33780 5.40076 5.44185 5.51863 5.52290 5.56733 5.58158 5.68492 5.72470 5.77636 6.19757 6.59269 6.88397 6.96130 7.46105 8.95041 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.023110 B = 0.006818 C = 0.006458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.315927 B = 4105.676298 C = 4334.420123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.086 3.914 3 C -0.146 4.146 4 N -0.542 5.542 5 C 0.209 3.791 6 C -0.511 4.511 7 H 0.052 0.948 8 C 0.002 3.998 9 N -0.934 5.934 10 Si 0.958 3.042 11 H -0.267 1.267 12 H -0.279 1.279 13 H -0.281 1.281 14 C 0.082 3.918 15 C -0.145 4.145 16 C -0.084 4.084 17 H 0.088 0.912 18 C -0.144 4.144 19 C -0.106 4.106 20 C -0.085 4.085 21 H 0.070 0.930 22 C -0.142 4.142 23 C -0.104 4.104 24 H 0.059 0.941 25 H 0.060 0.940 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.070 0.930 29 H 0.063 0.937 30 H 0.065 0.935 31 H -0.013 1.013 32 H -0.003 1.003 33 H 0.261 0.739 34 H 0.102 0.898 35 H 0.027 0.973 36 H 0.070 0.930 37 H 0.036 0.964 38 H 0.055 0.945 39 H 0.071 0.929 40 H 0.081 0.919 41 H 0.037 0.963 42 H 0.053 0.947 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.053 0.947 46 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.523 15.344 -3.553 16.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.022 4.022 3 C -0.203 4.203 4 N -0.265 5.265 5 C 0.083 3.917 6 C -0.549 4.549 7 H 0.070 0.930 8 C -0.195 4.195 9 N -0.575 5.575 10 Si 0.784 3.216 11 H -0.191 1.191 12 H -0.205 1.205 13 H -0.207 1.207 14 C -0.026 4.026 15 C -0.184 4.184 16 C -0.103 4.103 17 H 0.106 0.894 18 C -0.202 4.202 19 C -0.143 4.143 20 C -0.104 4.104 21 H 0.088 0.912 22 C -0.199 4.199 23 C -0.142 4.142 24 H 0.077 0.923 25 H 0.079 0.921 26 H 0.065 0.935 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.004 0.996 32 H 0.015 0.985 33 H 0.069 0.931 34 H 0.120 0.880 35 H 0.046 0.954 36 H 0.088 0.912 37 H 0.055 0.945 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.100 0.900 41 H 0.056 0.944 42 H 0.072 0.928 43 H 0.088 0.912 44 H 0.079 0.921 45 H 0.072 0.928 46 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 4.887 15.000 -3.498 16.159 hybrid contribution -1.206 -1.351 0.314 1.838 sum 3.681 13.649 -3.184 14.490 Atomic orbital electron populations 1.22632 0.98123 1.01930 1.01328 1.21486 0.92748 0.94454 0.93553 1.22102 1.01388 0.94213 1.02588 1.62478 1.48682 1.10743 1.04614 1.19450 0.89514 0.88388 0.94373 1.21515 1.27474 1.00411 1.05545 0.92952 1.25788 0.95350 1.00863 0.97532 1.70091 1.32456 1.27197 1.27742 0.85495 0.77820 0.78992 0.79288 1.19073 1.20532 1.20678 1.21928 0.95149 0.94984 0.90531 1.22526 0.98613 0.98543 0.98735 1.21128 0.96800 0.97703 0.94670 0.89387 1.21814 0.96366 1.00632 1.01345 1.21598 0.95240 0.99587 0.97873 1.21059 0.96465 0.96347 0.96546 0.91196 1.21871 0.99292 0.97062 1.01663 1.21559 0.99390 0.97565 0.95650 0.92287 0.92099 0.93517 0.92817 0.91118 0.91787 0.91614 0.99558 0.98466 0.93060 0.88016 0.95375 0.91173 0.94459 0.92594 0.90954 0.90013 0.94379 0.92786 0.91214 0.92068 0.92793 0.95453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.07 7.72 71.98 0.56 -6.52 16 2 C 0.09 3.26 2.89 44.92 0.13 3.39 16 3 C -0.15 -4.05 7.77 71.98 0.56 -3.49 16 4 N -0.54 -23.38 4.65 -850.41 -3.96 -27.34 16 5 C 0.21 11.09 3.08 85.56 0.26 11.36 16 6 C -0.51 -29.53 7.86 25.60 0.20 -29.32 16 7 H 0.05 3.03 7.44 -2.91 -0.02 3.01 16 8 C 0.00 0.12 5.46 84.65 0.46 0.58 16 9 N -0.93 -57.28 13.29 21.45 0.28 -57.00 16 10 Si 0.96 45.72 29.54 68.60 2.03 47.75 16 11 H -0.27 -12.31 7.11 99.48 0.71 -11.61 16 12 H -0.28 -12.96 7.11 99.48 0.71 -12.25 16 13 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 14 C 0.08 2.86 1.41 44.92 0.06 2.92 16 15 C -0.15 -4.85 2.79 30.59 0.09 -4.76 16 16 C -0.08 -2.13 2.44 -10.79 -0.03 -2.15 16 17 H 0.09 1.90 6.43 -2.39 -0.02 1.88 16 18 C -0.14 -3.32 9.20 71.98 0.66 -2.66 16 19 C -0.11 -2.67 4.73 30.59 0.14 -2.52 16 20 C -0.09 -2.23 3.19 -10.81 -0.03 -2.26 16 21 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 22 C -0.14 -2.93 8.50 71.98 0.61 -2.31 16 23 C -0.10 -3.66 4.70 30.58 0.14 -3.51 16 24 H 0.06 2.18 4.77 -2.39 -0.01 2.17 16 25 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.05 2.24 5.38 -2.39 -0.01 2.22 16 27 H 0.05 2.22 7.86 -2.39 -0.02 2.20 16 28 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 29 H 0.06 1.70 7.54 -2.39 -0.02 1.68 16 30 H 0.06 1.70 5.32 -2.38 -0.01 1.69 16 31 H -0.01 -0.73 4.60 -2.39 -0.01 -0.74 16 32 H 0.00 -0.16 6.05 -2.39 -0.01 -0.17 16 33 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 34 H 0.10 3.06 3.78 -2.39 -0.01 3.05 16 35 H 0.03 1.16 6.61 -2.38 -0.02 1.15 16 36 H 0.07 2.29 3.86 -2.39 -0.01 2.28 16 37 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 40 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 41 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 42 H 0.05 1.10 8.14 -2.39 -0.02 1.09 16 43 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 44 H 0.06 1.25 4.81 -2.39 -0.01 1.24 16 45 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 46 H 0.03 1.16 6.35 -2.39 -0.02 1.15 16 Total: -1.00 -64.40 319.23 3.11 -61.28 By element: Atomic # 1 Polarization: 15.63 SS G_CDS: 0.94 Total: 16.57 kcal Atomic # 6 Polarization: -45.09 SS G_CDS: 3.82 Total: -41.27 kcal Atomic # 7 Polarization: -80.67 SS G_CDS: -3.67 Total: -84.34 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.75 kcal Total: -64.40 3.11 -61.28 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084948320.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.854 kcal (2) G-P(sol) polarization free energy of solvation -64.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds