Wall clock time and date at job start Mon Mar 30 2020 07:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08999 * 109.47188 * 2 1 4 4 N 1.46910 * 109.46829 * 240.00416 * 2 1 3 5 5 C 1.46897 * 110.99723 * 84.99933 * 4 2 1 6 6 C 1.53001 * 109.46509 * 179.97438 * 5 4 2 7 7 C 1.53003 * 109.46901 * 180.02562 * 6 5 4 8 8 C 1.50700 * 109.47239 * 180.02562 * 7 6 5 9 9 H 1.08002 * 119.99856 * 359.97438 * 8 7 6 10 10 C 1.37873 * 120.00341 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99853 * 359.97438 * 10 8 7 12 12 Si 1.86800 * 120.00332 * 179.97438 * 10 8 7 13 13 H 1.48501 * 109.47260 * 89.99566 * 12 10 8 14 14 H 1.48494 * 109.47260 * 209.99606 * 12 10 8 15 15 H 1.48500 * 109.46867 * 329.99359 * 12 10 8 16 16 C 1.53000 * 109.47175 * 120.00558 * 2 1 3 17 17 C 1.50476 * 108.87353 * 299.99444 * 16 2 1 18 18 C 1.54245 * 108.51856 * 214.93199 * 17 16 2 19 19 C 1.45542 * 112.40792 * 280.00900 * 18 17 16 20 20 C 1.54245 * 112.32700 * 61.98392 * 19 18 17 21 21 C 1.50546 * 108.48390 * 279.88442 * 20 19 18 22 22 C 1.54056 * 108.87935 * 62.97387 * 16 2 1 23 23 H 1.08999 * 109.47188 * 180.02562 * 1 2 3 24 24 H 1.09007 * 109.46863 * 299.99705 * 1 2 3 25 25 H 1.08999 * 109.47402 * 59.99436 * 1 2 3 26 26 H 1.00901 * 110.99522 * 208.95222 * 4 2 1 27 27 H 1.08998 * 109.47413 * 299.99835 * 5 4 2 28 28 H 1.08997 * 109.46952 * 60.00442 * 5 4 2 29 29 H 1.09003 * 109.47540 * 299.99678 * 6 5 4 30 30 H 1.09004 * 109.47283 * 60.00274 * 6 5 4 31 31 H 1.08998 * 109.47143 * 300.00004 * 7 6 5 32 32 H 1.08998 * 109.47402 * 59.99871 * 7 6 5 33 33 H 0.97003 * 119.99918 * 180.02562 * 11 10 8 34 34 H 1.09003 * 108.85174 * 181.44217 * 16 2 1 35 35 H 1.09002 * 109.62685 * 95.22749 * 17 16 2 36 36 H 1.08995 * 109.63266 * 334.64342 * 17 16 2 37 37 H 1.08997 * 108.89530 * 159.25760 * 18 17 16 38 38 H 1.09002 * 108.89487 * 40.76592 * 18 17 16 39 39 H 1.09002 * 108.89596 * 182.69054 * 19 18 17 40 40 H 1.09003 * 108.89788 * 301.28088 * 19 18 17 41 41 H 1.09000 * 109.62486 * 39.68278 * 20 19 18 42 42 H 1.08999 * 109.63051 * 160.25691 * 20 19 18 43 43 H 1.09000 * 108.92627 * 333.51136 * 21 20 19 44 44 H 1.09003 * 108.91864 * 215.01792 * 21 20 19 45 45 H 1.09000 * 108.81295 * 318.36452 * 22 16 2 46 46 H 1.08999 * 108.81700 * 76.64582 * 22 16 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1996 5 6 2.0823 0.2227 -2.3469 6 6 2.5960 -0.5327 -3.5742 7 6 2.6620 0.4206 -4.7691 8 6 3.1674 -0.3236 -5.9782 9 1 3.4170 -1.3716 -5.9019 10 6 3.3121 0.3336 -7.1815 11 7 3.0086 1.6099 -7.2744 12 14 3.9392 -0.5887 -8.6801 13 1 2.7906 -1.1707 -9.4196 14 1 4.6747 0.3488 -9.5663 15 1 4.8510 -1.6772 -8.2455 16 6 2.0400 -0.7214 1.2492 17 6 1.5311 -0.0016 2.4687 18 6 2.6103 -0.0774 3.5682 19 6 2.6047 -1.3557 4.2640 20 6 2.9151 -2.5370 3.3220 21 6 1.6600 -2.8896 2.5691 22 6 1.5816 -2.1913 1.1980 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 2.9172 -1.1205 -1.0289 27 1 1.0869 0.6165 -2.5525 28 1 2.7588 1.0462 -2.1182 29 1 3.5915 -0.9261 -3.3684 30 1 1.9199 -1.3566 -3.8031 31 1 1.6667 0.8144 -4.9752 32 1 3.3383 1.2441 -4.5401 33 1 3.1101 2.0722 -8.1211 34 1 3.1296 -0.6930 1.2520 35 1 0.6162 -0.4786 2.8203 36 1 1.3322 1.0413 2.2221 37 1 2.4340 0.7189 4.2913 38 1 3.5893 0.0723 3.1128 39 1 3.3530 -1.3297 5.0561 40 1 1.6228 -1.5097 4.7115 41 1 3.6970 -2.2491 2.6193 42 1 3.2432 -3.3958 3.9076 43 1 0.7959 -2.5951 3.1647 44 1 1.6302 -3.9686 2.4175 45 1 0.5512 -2.2261 0.8442 46 1 2.2119 -2.7317 0.4918 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088169188.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:18:01 Heat of formation + Delta-G solvation = -46.932970 kcal Electronic energy + Delta-G solvation = -19178.293090 eV Core-core repulsion = 16486.758052 eV Total energy + Delta-G solvation = -2691.535038 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.69286 -36.72537 -34.22129 -32.58006 -32.42003 -30.60198 -28.69216 -26.20978 -25.11103 -24.65436 -22.44139 -21.08660 -20.66505 -20.08211 -18.46931 -16.35025 -16.12676 -15.51209 -15.06765 -14.95796 -14.49257 -14.20471 -13.88420 -13.76434 -13.23296 -12.96842 -12.68752 -12.41301 -12.13410 -12.10096 -11.75207 -11.66339 -11.38601 -11.13666 -10.90395 -10.81557 -10.67232 -10.61015 -10.51876 -10.48855 -10.35408 -10.14456 -10.07308 -9.63441 -9.26927 -9.00378 -8.30993 -8.06371 -5.96234 -3.98160 3.34598 3.40408 3.44197 4.37356 4.45023 4.49450 4.53733 4.68732 4.94561 4.99519 5.10363 5.15211 5.24127 5.30399 5.39472 5.45829 5.52624 5.58515 5.67907 5.80192 5.82491 5.87156 5.90027 5.97015 5.99362 6.01980 6.03950 6.08830 6.16683 6.18941 6.22257 6.26837 6.40061 6.42025 6.57662 6.78410 6.86209 7.19314 7.46605 7.72142 7.74651 7.88768 8.04690 8.48172 9.09212 9.65633 11.15265 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.040830 B = 0.003260 C = 0.003170 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.598562 B = 8587.510562 C = 8831.956537 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.084 3.916 3 H 0.039 0.961 4 N -0.685 5.685 5 C 0.059 3.941 6 C -0.106 4.106 7 C 0.022 3.978 8 C -0.518 4.518 9 H 0.055 0.945 10 C 0.055 3.945 11 N -0.897 5.897 12 Si 0.892 3.108 13 H -0.280 1.280 14 H -0.287 1.287 15 H -0.274 1.274 16 C -0.084 4.084 17 C -0.109 4.109 18 C -0.119 4.119 19 C -0.116 4.116 20 C -0.118 4.118 21 C -0.119 4.119 22 C -0.107 4.107 23 H 0.063 0.937 24 H 0.051 0.949 25 H 0.052 0.948 26 H 0.336 0.664 27 H 0.065 0.935 28 H 0.021 0.979 29 H 0.043 0.957 30 H 0.055 0.945 31 H 0.015 0.985 32 H 0.013 0.987 33 H 0.260 0.740 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.055 0.945 38 H 0.058 0.942 39 H 0.054 0.946 40 H 0.058 0.942 41 H 0.065 0.935 42 H 0.057 0.943 43 H 0.057 0.943 44 H 0.055 0.945 45 H 0.069 0.931 46 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.772 -5.036 23.374 24.071 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.026 4.026 3 H 0.057 0.943 4 N -0.317 5.317 5 C -0.069 4.069 6 C -0.144 4.144 7 C -0.016 4.016 8 C -0.556 4.556 9 H 0.073 0.927 10 C -0.146 4.146 11 N -0.537 5.537 12 Si 0.720 3.280 13 H -0.207 1.207 14 H -0.213 1.213 15 H -0.199 1.199 16 C -0.103 4.103 17 C -0.147 4.147 18 C -0.156 4.156 19 C -0.154 4.154 20 C -0.156 4.156 21 C -0.157 4.157 22 C -0.145 4.145 23 H 0.082 0.918 24 H 0.070 0.930 25 H 0.071 0.929 26 H 0.153 0.847 27 H 0.084 0.916 28 H 0.040 0.960 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.034 0.966 32 H 0.031 0.969 33 H 0.069 0.931 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.076 0.924 41 H 0.084 0.916 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.087 0.913 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -3.395 -5.132 23.076 23.882 hybrid contribution 1.147 0.205 -0.731 1.375 sum -2.249 -4.927 22.345 22.992 Atomic orbital electron populations 1.21876 0.94991 1.02202 1.00869 1.21676 0.96002 0.95461 0.89456 0.94334 1.60624 1.32943 1.33877 1.04207 1.22152 1.00288 0.93673 0.90799 1.21614 0.99184 0.99419 0.94213 1.19063 0.97042 0.94228 0.91229 1.21270 1.43384 0.96373 0.94593 0.92690 1.25036 0.95695 0.94880 0.98963 1.69974 1.49079 1.08981 1.25642 0.86595 0.78956 0.79620 0.82842 1.20665 1.21277 1.19881 1.21117 0.99899 0.95289 0.94023 1.21397 0.98456 1.00194 0.94673 1.20492 0.99467 0.97475 0.98190 1.20487 1.01453 0.95256 0.98178 1.21364 0.98376 0.97558 0.98265 1.21388 0.97757 0.99788 0.96767 1.21924 1.02520 0.94036 0.95978 0.91805 0.92993 0.92855 0.84655 0.91616 0.96029 0.93786 0.92631 0.96646 0.96878 0.93072 0.91821 0.91526 0.91868 0.92607 0.92284 0.92754 0.92364 0.91590 0.92410 0.92475 0.92625 0.91293 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.91 37.15 0.33 -1.36 16 2 C 0.08 1.04 2.19 -67.71 -0.15 0.89 16 3 H 0.04 0.51 7.74 -51.93 -0.40 0.11 16 4 N -0.69 -10.09 5.75 -106.73 -0.61 -10.70 16 5 C 0.06 1.06 5.48 -3.83 -0.02 1.04 16 6 C -0.11 -2.27 5.41 -26.73 -0.14 -2.41 16 7 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16 8 C -0.52 -15.06 9.11 -34.44 -0.31 -15.38 16 9 H 0.05 1.56 7.74 -52.49 -0.41 1.15 16 10 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 11 N -0.90 -27.52 13.29 55.43 0.74 -26.78 16 12 Si 0.89 22.06 29.54 -169.99 -5.02 17.04 16 13 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 14 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 15 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 16 C -0.08 -0.86 1.37 -91.33 -0.13 -0.98 16 17 C -0.11 -0.97 3.96 -27.34 -0.11 -1.08 16 18 C -0.12 -0.96 5.26 -29.60 -0.16 -1.12 16 19 C -0.12 -0.89 5.27 -29.60 -0.16 -1.04 16 20 C -0.12 -0.96 5.61 -27.31 -0.15 -1.11 16 21 C -0.12 -1.03 5.32 -27.40 -0.15 -1.17 16 22 C -0.11 -1.08 4.71 -25.62 -0.12 -1.20 16 23 H 0.06 0.76 6.12 -51.93 -0.32 0.45 16 24 H 0.05 0.53 7.01 -51.92 -0.36 0.16 16 25 H 0.05 0.71 7.45 -51.93 -0.39 0.32 16 26 H 0.34 4.72 8.10 -39.29 -0.32 4.40 16 27 H 0.07 1.21 7.44 -51.93 -0.39 0.82 16 28 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 29 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 31 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 34 H 0.06 0.67 6.61 -51.93 -0.34 0.33 16 35 H 0.07 0.58 6.98 -51.93 -0.36 0.22 16 36 H 0.06 0.58 7.39 -51.93 -0.38 0.19 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.51 7.47 -51.93 -0.39 0.12 16 39 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.06 0.43 7.46 -51.93 -0.39 0.05 16 41 H 0.07 0.58 6.96 -51.93 -0.36 0.22 16 42 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 43 H 0.06 0.48 6.63 -51.93 -0.34 0.13 16 44 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 45 H 0.07 0.75 5.74 -51.93 -0.30 0.45 16 46 H 0.06 0.70 7.83 -51.93 -0.41 0.29 16 LS Contribution 339.09 15.07 5.11 5.11 Total: -1.00 -29.69 339.09 -10.08 -39.77 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -8.79 Total: -1.48 kcal Atomic # 6 Polarization: -21.46 SS G_CDS: -1.50 Total: -22.96 kcal Atomic # 7 Polarization: -37.61 SS G_CDS: 0.12 Total: -37.48 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.69 -10.08 -39.77 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088169188.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.162 kcal (2) G-P(sol) polarization free energy of solvation -29.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.771 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds