Wall clock time and date at job start Mon Mar 30 2020 07:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 109.47220 * 2 1 4 4 C 1.50699 * 109.46592 * 119.99634 * 2 1 3 5 5 H 1.08007 * 119.99537 * 120.00340 * 4 2 1 6 6 C 1.37876 * 120.00175 * 299.99813 * 4 2 1 7 7 N 1.31508 * 120.00273 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99911 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47528 * 89.99941 * 8 6 4 10 10 H 1.48502 * 109.46824 * 210.00219 * 8 6 4 11 11 H 1.48504 * 109.46779 * 329.99506 * 8 6 4 12 12 N 1.46898 * 109.47207 * 239.99450 * 2 1 3 13 13 C 1.46899 * 111.00036 * 306.05038 * 12 2 1 14 14 C 1.46901 * 110.99828 * 70.00104 * 12 2 1 15 15 H 1.09002 * 109.47401 * 300.00060 * 14 12 2 16 16 C 1.52997 * 109.46941 * 60.00025 * 14 12 2 17 17 C 1.53002 * 109.46978 * 179.97438 * 16 14 12 18 18 H 1.09002 * 109.46838 * 60.00684 * 17 16 14 19 19 C 1.53008 * 109.47025 * 180.02562 * 17 16 14 20 20 C 1.52993 * 109.47392 * 299.99957 * 17 16 14 21 21 C 1.52997 * 109.47024 * 60.00071 * 20 17 16 22 22 C 1.53006 * 109.47164 * 60.00057 * 21 20 17 23 23 C 1.52999 * 109.47592 * 179.97438 * 21 20 17 24 24 C 1.52997 * 109.47232 * 299.99958 * 21 20 17 25 25 H 1.09000 * 109.47418 * 300.00697 * 1 2 3 26 26 H 1.08999 * 109.47092 * 60.00097 * 1 2 3 27 27 H 1.08998 * 109.47734 * 179.97438 * 1 2 3 28 28 H 0.96997 * 120.00354 * 180.02562 * 7 6 4 29 29 H 1.08996 * 109.47534 * 183.95214 * 13 12 2 30 30 H 1.08998 * 109.47337 * 303.95365 * 13 12 2 31 31 H 1.09007 * 109.47493 * 63.95136 * 13 12 2 32 32 H 1.09002 * 109.47045 * 59.99816 * 16 14 12 33 33 H 1.08998 * 109.47624 * 300.00192 * 16 14 12 34 34 H 1.08999 * 109.47300 * 180.02562 * 19 17 16 35 35 H 1.09001 * 109.46630 * 300.00225 * 19 17 16 36 36 H 1.08992 * 109.47290 * 59.99980 * 19 17 16 37 37 H 1.09002 * 109.47722 * 300.00185 * 20 17 16 38 38 H 1.09000 * 109.47250 * 180.02562 * 20 17 16 39 39 H 1.09001 * 109.46801 * 180.02562 * 22 21 20 40 40 H 1.09001 * 109.46998 * 299.99705 * 22 21 20 41 41 H 1.09000 * 109.47050 * 59.99996 * 22 21 20 42 42 H 1.09000 * 109.47160 * 300.00333 * 23 21 20 43 43 H 1.09002 * 109.46719 * 60.00054 * 23 21 20 44 44 H 1.08993 * 109.47839 * 179.97438 * 23 21 20 45 45 H 1.09004 * 109.47261 * 179.97438 * 24 21 20 46 46 H 1.09002 * 109.47153 * 299.99992 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7103 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6991 -0.2392 2.4828 7 7 0.9427 0.8298 2.6034 8 14 2.3222 -1.1194 4.0081 9 1 3.6302 -0.5440 4.4121 10 1 1.3441 -0.9487 5.1123 11 1 2.4876 -2.5653 3.7123 12 7 2.0197 -0.6926 -1.1993 13 6 1.4343 -2.0355 -1.3077 14 6 1.7529 0.0971 -2.4090 15 1 0.6792 0.2549 -2.5105 16 6 2.4593 1.4499 -2.3009 17 6 2.1820 2.2721 -3.5611 18 1 1.1083 2.4300 -3.6629 19 6 2.8890 3.6248 -3.4533 20 6 2.7054 1.5200 -4.7863 21 6 1.9991 0.1671 -4.8944 22 6 0.4919 0.3887 -5.0374 23 6 2.5219 -0.5849 -6.1199 24 6 2.2763 -0.6551 -3.6343 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 0.7086 1.1615 3.4843 29 1 1.8663 -2.5523 -2.1646 30 1 1.6465 -2.5988 -0.3989 31 1 0.3554 -1.9521 -1.4398 32 1 3.5331 1.2920 -2.1995 33 1 2.0868 1.9856 -1.4279 34 1 2.6911 4.2107 -4.3509 35 1 2.5164 4.1608 -2.5804 36 1 3.9625 3.4666 -3.3517 37 1 3.7791 1.3620 -4.6845 38 1 2.5083 2.1059 -5.6840 39 1 -0.0113 -0.5752 -5.1139 40 1 0.1190 0.9245 -4.1645 41 1 0.2944 0.9745 -5.9351 42 1 2.3241 0.0010 -7.0175 43 1 3.5957 -0.7427 -6.0184 44 1 2.0191 -1.5488 -6.1967 45 1 1.7727 -1.6188 -3.7111 46 1 3.3500 -0.8130 -3.5324 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000093090363.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:03:13 Heat of formation + Delta-G solvation = -22.782466 kcal Electronic energy + Delta-G solvation = -20716.827611 eV Core-core repulsion = 18026.339817 eV Total energy + Delta-G solvation = -2690.487793 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.77213 -36.59725 -33.80289 -32.79751 -30.19113 -28.35818 -27.21665 -26.45208 -26.02215 -25.15608 -24.30838 -21.30598 -20.13092 -18.66109 -18.14387 -16.21932 -15.38360 -14.81691 -14.78001 -14.31422 -13.88969 -13.79648 -13.47504 -13.07162 -12.70622 -12.42673 -12.30474 -12.15360 -11.91588 -11.69331 -11.59200 -11.37962 -11.20582 -11.05664 -10.81379 -10.71400 -10.62969 -10.55407 -10.47362 -10.31878 -10.14545 -9.98535 -9.77718 -9.61744 -9.24364 -8.77929 -8.29232 -6.99811 -5.95464 -3.98134 3.34160 3.40314 3.43929 4.45118 4.77715 4.83054 4.93294 5.16443 5.33490 5.36932 5.46273 5.52738 5.68023 5.70919 5.74397 5.81656 5.85329 5.91343 5.94437 6.04393 6.07425 6.11354 6.20628 6.23132 6.24756 6.31332 6.35867 6.43416 6.54098 6.58586 6.62501 6.70459 6.73775 6.85589 6.88784 6.96409 6.99702 7.23884 7.59112 7.78375 7.92389 8.25567 8.48066 8.71161 9.08352 9.66456 11.11624 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.029162 B = 0.005973 C = 0.005479 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.935551 B = 4686.432037 C = 5109.620834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.207 3.793 3 H 0.045 0.955 4 C -0.495 4.495 5 H 0.061 0.939 6 C 0.057 3.943 7 N -0.896 5.896 8 Si 0.895 3.105 9 H -0.281 1.281 10 H -0.289 1.289 11 H -0.275 1.275 12 N -0.532 5.532 13 C 0.034 3.966 14 C 0.085 3.915 15 H 0.034 0.966 16 C -0.105 4.105 17 C -0.093 4.093 18 H 0.067 0.933 19 C -0.144 4.144 20 C -0.099 4.099 21 C -0.064 4.064 22 C -0.144 4.144 23 C -0.138 4.138 24 C -0.100 4.100 25 H 0.086 0.914 26 H 0.005 0.995 27 H 0.029 0.971 28 H 0.259 0.741 29 H 0.044 0.956 30 H 0.070 0.930 31 H 0.013 0.987 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.047 0.953 35 H 0.054 0.946 36 H 0.052 0.948 37 H 0.060 0.940 38 H 0.054 0.946 39 H 0.049 0.951 40 H 0.062 0.938 41 H 0.048 0.952 42 H 0.050 0.950 43 H 0.053 0.947 44 H 0.051 0.949 45 H 0.058 0.942 46 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.168 0.937 -14.837 14.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.101 3.899 3 H 0.063 0.937 4 C -0.534 4.534 5 H 0.079 0.921 6 C -0.144 4.144 7 N -0.536 5.536 8 Si 0.723 3.277 9 H -0.208 1.208 10 H -0.215 1.215 11 H -0.200 1.200 12 N -0.256 5.256 13 C -0.115 4.115 14 C -0.024 4.024 15 H 0.052 0.948 16 C -0.143 4.143 17 C -0.112 4.112 18 H 0.086 0.914 19 C -0.202 4.202 20 C -0.136 4.136 21 C -0.065 4.065 22 C -0.201 4.201 23 C -0.196 4.196 24 C -0.138 4.138 25 H 0.105 0.895 26 H 0.024 0.976 27 H 0.048 0.952 28 H 0.069 0.931 29 H 0.062 0.938 30 H 0.088 0.912 31 H 0.032 0.968 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.079 0.921 38 H 0.073 0.927 39 H 0.069 0.931 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.069 0.931 43 H 0.072 0.928 44 H 0.070 0.930 45 H 0.076 0.924 46 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.606 0.988 -14.634 14.755 hybrid contribution -0.685 -0.355 0.868 1.161 sum 0.921 0.633 -13.767 13.812 Atomic orbital electron populations 1.22383 1.01168 0.99218 1.00252 1.19352 0.89518 0.94922 0.86086 0.93740 1.21144 1.30158 1.12331 0.89763 0.92112 1.24918 0.95335 0.95198 0.98916 1.69883 1.37257 1.23213 1.23232 0.86554 0.78479 0.80014 0.82667 1.20763 1.21460 1.20021 1.62357 1.58758 1.02176 1.02281 1.22238 0.96011 0.92226 1.00998 1.21539 0.96992 0.93300 0.90581 0.94790 1.21652 1.01168 0.94867 0.96594 1.21183 0.99955 0.94697 0.95364 0.91442 1.21803 1.00577 0.96714 1.01094 1.21619 0.99725 0.94923 0.97340 1.20534 0.95369 0.95425 0.95173 1.21969 0.95332 1.01276 1.01505 1.21842 1.00833 0.99802 0.97085 1.21687 1.01502 0.97779 0.92813 0.89531 0.97586 0.95207 0.93134 0.93761 0.91157 0.96818 0.91690 0.91222 0.93357 0.92663 0.92846 0.92113 0.92736 0.93148 0.91867 0.93313 0.93129 0.92825 0.92951 0.92363 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.20 8.22 37.16 0.31 -3.89 16 2 C 0.21 5.20 2.12 -68.87 -0.15 5.06 16 3 H 0.04 1.22 5.83 -51.93 -0.30 0.91 16 4 C -0.50 -13.65 7.91 -34.44 -0.27 -13.93 16 5 H 0.06 1.69 7.12 -52.48 -0.37 1.32 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.48 16 7 N -0.90 -25.67 11.32 55.43 0.63 -25.05 16 8 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 9 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 12 N -0.53 -11.46 4.57 -228.30 -1.04 -12.51 16 13 C 0.03 0.68 8.23 60.06 0.49 1.17 16 14 C 0.08 1.53 1.46 -67.71 -0.10 1.43 16 15 H 0.03 0.65 4.91 -51.93 -0.25 0.40 16 16 C -0.11 -1.83 4.28 -26.73 -0.11 -1.94 16 17 C -0.09 -1.29 2.45 -90.62 -0.22 -1.52 16 18 H 0.07 0.96 6.43 -51.93 -0.33 0.62 16 19 C -0.14 -1.81 9.19 37.16 0.34 -1.47 16 20 C -0.10 -1.22 4.01 -26.74 -0.11 -1.33 16 21 C -0.06 -0.81 0.77 -154.51 -0.12 -0.93 16 22 C -0.14 -1.78 7.78 37.16 0.29 -1.49 16 23 C -0.14 -1.49 8.47 37.16 0.31 -1.18 16 24 C -0.10 -1.52 3.65 -26.73 -0.10 -1.61 16 25 H 0.09 2.35 6.07 -51.93 -0.32 2.03 16 26 H 0.01 0.12 6.69 -51.93 -0.35 -0.23 16 27 H 0.03 0.71 6.41 -51.93 -0.33 0.38 16 28 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 29 H 0.04 0.77 6.23 -51.93 -0.32 0.45 16 30 H 0.07 1.51 6.76 -51.93 -0.35 1.16 16 31 H 0.01 0.27 6.46 -51.93 -0.34 -0.07 16 32 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 33 H 0.07 1.38 6.20 -51.93 -0.32 1.06 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 39 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.87 4.81 -51.93 -0.25 0.62 16 41 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 44 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.88 6.34 -51.93 -0.33 0.55 16 46 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 326.87 15.07 4.93 4.93 Total: -1.00 -27.73 326.87 -8.42 -36.14 By element: Atomic # 1 Polarization: 8.46 SS G_CDS: -8.38 Total: 0.08 kcal Atomic # 6 Polarization: -20.62 SS G_CDS: 0.47 Total: -20.14 kcal Atomic # 7 Polarization: -37.14 SS G_CDS: -0.42 Total: -37.55 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -27.73 -8.42 -36.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000093090363.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.362 kcal (2) G-P(sol) polarization free energy of solvation -27.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds