Wall clock time and date at job start Mon Mar 30 2020 06:10:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46815 * 2 1 4 4 H 1.08999 * 109.47339 * 328.66435 * 3 2 1 5 5 C 1.50702 * 109.46989 * 208.66427 * 3 2 1 6 6 H 1.07997 * 120.00394 * 239.99848 * 5 3 2 7 7 C 1.37882 * 119.99917 * 60.00422 * 5 3 2 8 8 N 1.31520 * 119.99866 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00178 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47345 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47320 * 119.99450 * 9 7 5 12 12 H 1.48496 * 109.47341 * 239.99787 * 9 7 5 13 13 N 1.46898 * 109.47160 * 88.66888 * 3 2 1 14 14 C 1.46901 * 110.99736 * 294.30134 * 13 3 2 15 15 H 1.09001 * 109.46837 * 61.96814 * 14 13 3 16 16 C 1.53005 * 109.47323 * 301.97012 * 14 13 3 17 17 C 1.52996 * 109.46929 * 300.00023 * 16 14 13 18 18 C 1.53003 * 109.47293 * 299.99854 * 17 16 14 19 19 C 1.53000 * 109.47006 * 59.99865 * 18 17 16 20 20 C 1.52994 * 109.46973 * 181.96889 * 14 13 3 21 21 H 1.09002 * 109.47142 * 180.02562 * 20 14 13 22 22 C 1.52998 * 109.47556 * 299.99901 * 20 14 13 23 23 C 1.52997 * 109.47668 * 181.57029 * 22 20 14 24 24 C 1.53004 * 109.47073 * 301.57458 * 22 20 14 25 25 H 1.09000 * 109.47050 * 311.94689 * 1 2 3 26 26 H 1.09001 * 109.47040 * 191.95576 * 1 2 3 27 27 H 1.08995 * 109.47743 * 71.94872 * 1 2 3 28 28 H 1.08998 * 109.47226 * 119.99963 * 2 1 3 29 29 H 1.09006 * 109.46539 * 240.00488 * 2 1 3 30 30 H 0.97002 * 119.99561 * 180.02562 * 8 7 5 31 31 H 1.00903 * 110.99838 * 170.35246 * 13 3 2 32 32 H 1.08997 * 109.47046 * 60.00093 * 16 14 13 33 33 H 1.09002 * 109.47015 * 180.02562 * 16 14 13 34 34 H 1.09001 * 109.46834 * 179.97438 * 17 16 14 35 35 H 1.09002 * 109.47276 * 60.00155 * 17 16 14 36 36 H 1.08998 * 109.46805 * 300.00603 * 18 17 16 37 37 H 1.08995 * 109.47144 * 180.02562 * 18 17 16 38 38 H 1.08997 * 109.47039 * 179.97438 * 19 18 17 39 39 H 1.09002 * 109.46747 * 60.00198 * 19 18 17 40 40 H 1.09006 * 109.46794 * 61.57111 * 22 20 14 41 41 H 1.09006 * 109.46946 * 60.00175 * 23 22 20 42 42 H 1.08996 * 109.47436 * 179.97438 * 23 22 20 43 43 H 1.08994 * 109.47306 * 300.00723 * 23 22 20 44 44 H 1.08998 * 109.46844 * 68.30630 * 24 22 20 45 45 H 1.09001 * 109.46677 * 188.30266 * 24 22 20 46 46 H 1.08994 * 109.47367 * 308.30391 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3335 2.0777 -0.5344 5 6 3.3828 1.5006 -0.6815 6 1 4.2483 1.8532 -0.1403 7 6 3.5064 1.1037 -1.9962 8 7 2.4525 0.6739 -2.6552 9 14 5.1710 1.1749 -2.8408 10 1 6.1874 1.6907 -1.8889 11 1 5.5577 -0.1871 -3.2885 12 1 5.0912 2.0784 -4.0166 13 7 2.1728 1.9149 1.3846 14 6 0.8608 2.0004 2.0398 15 1 0.4101 1.0088 2.0811 16 6 -0.0467 2.9404 1.2435 17 6 0.5861 4.3322 1.1855 18 6 0.7598 4.8731 2.6062 19 6 1.6671 3.9331 3.4024 20 6 1.0345 2.5413 3.4604 21 1 0.0610 2.6043 3.9467 22 6 1.9419 1.6014 4.2567 23 6 2.0840 2.1213 5.6885 24 6 1.3283 0.2000 4.2815 25 1 -0.3633 0.6869 0.7643 26 1 -0.3633 -1.0054 0.2129 27 1 -0.3634 0.3184 -0.9770 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 2.5396 0.3943 -3.5799 31 1 2.6529 2.8017 1.4196 32 1 -0.1704 2.5550 0.2315 33 1 -1.0200 3.0042 1.7300 34 1 -0.0602 5.0017 0.6179 35 1 1.5596 4.2688 0.6993 36 1 -0.2137 4.9365 3.0923 37 1 1.2101 5.8648 2.5648 38 1 1.7912 4.3187 4.4143 39 1 2.6406 3.8697 2.9162 40 1 2.9242 1.5597 3.7861 41 1 1.1016 2.1630 6.1591 42 1 2.7300 1.4514 6.2559 43 1 2.5210 3.1197 5.6709 44 1 1.3626 -0.2294 3.2802 45 1 1.8931 -0.4317 4.9672 46 1 0.2925 0.2626 4.6147 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000125703556.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:37 Heat of formation + Delta-G solvation = -30.707867 kcal Electronic energy + Delta-G solvation = -21004.846735 eV Core-core repulsion = 18314.015270 eV Total energy + Delta-G solvation = -2690.831465 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.61140 -35.62715 -34.40831 -32.21339 -30.40823 -29.55809 -28.61113 -26.81763 -25.66552 -22.74372 -22.53691 -21.75957 -19.92264 -19.31698 -17.97168 -16.59639 -15.71184 -14.71923 -14.66112 -14.17198 -14.03657 -13.41473 -13.25331 -13.01326 -12.93328 -12.38514 -12.29893 -12.15345 -11.96241 -11.55183 -11.48048 -11.25467 -10.99571 -10.87997 -10.78504 -10.71123 -10.66276 -10.57943 -10.18781 -10.10778 -9.82468 -9.71285 -9.59027 -9.44304 -9.08630 -8.71968 -8.30216 -7.04447 -5.95901 -4.00495 3.31579 3.39886 3.44179 4.45671 4.99486 5.05198 5.16458 5.34465 5.36497 5.47406 5.49955 5.56738 5.70108 5.84167 5.89470 5.94572 5.98427 6.02181 6.05436 6.12614 6.17143 6.22112 6.27571 6.35348 6.40637 6.43770 6.47294 6.53175 6.60829 6.65466 6.68844 6.76415 6.79740 6.93741 6.99264 7.13314 7.28952 7.41623 7.62087 7.88405 7.97481 8.42391 8.57637 8.78411 9.11431 9.64526 11.09846 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.021447 B = 0.006952 C = 0.006768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.244544 B = 4026.478478 C = 4136.066938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.104 4.104 3 C 0.215 3.785 4 H 0.005 0.995 5 C -0.506 4.506 6 H 0.058 0.942 7 C 0.059 3.941 8 N -0.889 5.889 9 Si 0.891 3.109 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.287 1.287 13 N -0.674 5.674 14 C 0.085 3.915 15 H 0.087 0.913 16 C -0.158 4.158 17 C -0.119 4.119 18 C -0.116 4.116 19 C -0.117 4.117 20 C -0.071 4.071 21 H 0.058 0.942 22 C -0.083 4.083 23 C -0.148 4.148 24 C -0.143 4.143 25 H 0.051 0.949 26 H 0.026 0.974 27 H 0.045 0.955 28 H 0.033 0.967 29 H 0.085 0.915 30 H 0.258 0.742 31 H 0.326 0.674 32 H 0.076 0.924 33 H 0.048 0.952 34 H 0.051 0.949 35 H 0.068 0.932 36 H 0.053 0.947 37 H 0.053 0.947 38 H 0.056 0.944 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.045 0.955 42 H 0.047 0.953 43 H 0.052 0.948 44 H 0.066 0.934 45 H 0.044 0.956 46 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.323 4.090 11.718 13.143 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.142 4.142 3 C 0.108 3.892 4 H 0.023 0.977 5 C -0.545 4.545 6 H 0.076 0.924 7 C -0.142 4.142 8 N -0.528 5.528 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.213 1.213 13 N -0.306 5.306 14 C -0.026 4.026 15 H 0.104 0.896 16 C -0.197 4.197 17 C -0.157 4.157 18 C -0.154 4.154 19 C -0.155 4.155 20 C -0.090 4.090 21 H 0.076 0.924 22 C -0.102 4.102 23 C -0.205 4.205 24 C -0.201 4.201 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.064 0.936 28 H 0.052 0.948 29 H 0.103 0.897 30 H 0.068 0.932 31 H 0.145 0.855 32 H 0.094 0.906 33 H 0.067 0.933 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.072 0.928 37 H 0.072 0.928 38 H 0.075 0.925 39 H 0.087 0.913 40 H 0.103 0.897 41 H 0.064 0.936 42 H 0.066 0.934 43 H 0.071 0.929 44 H 0.085 0.915 45 H 0.063 0.937 46 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -4.218 3.387 11.783 12.966 hybrid contribution 0.363 0.785 -1.096 1.397 sum -3.855 4.173 10.687 12.103 Atomic orbital electron populations 1.22208 0.99640 0.98986 1.00788 1.21517 0.91764 0.99837 1.01129 1.19138 0.95675 0.91835 0.82559 0.97730 1.21260 0.94745 1.42645 0.95820 0.92373 1.24904 0.96393 0.95550 0.97371 1.69968 1.28462 1.44117 1.10257 0.86558 0.84579 0.77535 0.79406 1.19842 1.21164 1.21302 1.60967 1.16117 1.32877 1.20629 1.21774 0.91093 0.97794 0.91933 0.89558 1.22341 0.98882 0.96108 1.02417 1.21492 1.01544 0.96523 0.96143 1.21521 0.99414 0.98195 0.96221 1.21644 0.99476 0.95002 0.99363 1.21209 0.97880 0.94090 0.95845 0.92359 1.20997 1.00733 0.94320 0.94100 1.21934 1.00756 1.00690 0.97166 1.21820 0.99362 0.96667 1.02222 0.93001 0.95509 0.93594 0.94793 0.89665 0.93232 0.85527 0.90569 0.93330 0.93007 0.91384 0.92808 0.92791 0.92522 0.91349 0.89661 0.93569 0.93411 0.92898 0.91494 0.93731 0.93922 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.28 8.77 37.16 0.33 -2.95 16 2 C -0.10 -2.46 5.00 -26.73 -0.13 -2.59 16 3 C 0.22 5.15 2.03 -68.86 -0.14 5.02 16 4 H 0.01 0.14 5.72 -51.93 -0.30 -0.16 16 5 C -0.51 -13.63 8.70 -34.44 -0.30 -13.93 16 6 H 0.06 1.58 7.81 -52.49 -0.41 1.17 16 7 C 0.06 1.61 5.10 -17.82 -0.09 1.52 16 8 N -0.89 -25.10 11.52 55.43 0.64 -24.46 16 9 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 11 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 12 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 13 N -0.67 -13.44 5.15 -100.95 -0.52 -13.96 16 14 C 0.08 1.43 1.46 -67.71 -0.10 1.33 16 15 H 0.09 1.55 3.84 -51.93 -0.20 1.35 16 16 C -0.16 -2.65 4.15 -26.73 -0.11 -2.76 16 17 C -0.12 -1.87 5.66 -26.73 -0.15 -2.02 16 18 C -0.12 -1.54 5.92 -26.73 -0.16 -1.70 16 19 C -0.12 -1.58 4.63 -26.73 -0.12 -1.71 16 20 C -0.07 -1.02 1.59 -90.63 -0.14 -1.16 16 21 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 22 C -0.08 -1.16 2.32 -90.62 -0.21 -1.37 16 23 C -0.15 -1.74 8.87 37.16 0.33 -1.41 16 24 C -0.14 -2.00 8.55 37.16 0.32 -1.69 16 25 H 0.05 0.97 3.48 -51.93 -0.18 0.79 16 26 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.03 0.78 8.05 -51.93 -0.42 0.37 16 29 H 0.08 2.30 5.91 -51.93 -0.31 1.99 16 30 H 0.26 7.00 8.31 -40.82 -0.34 6.66 16 31 H 0.33 6.50 5.12 -39.29 -0.20 6.30 16 32 H 0.08 1.48 5.04 -51.93 -0.26 1.22 16 33 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 1.21 6.81 -51.93 -0.35 0.86 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 37 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.06 0.68 6.47 -51.93 -0.34 0.35 16 39 H 0.07 1.01 6.53 -51.93 -0.34 0.67 16 40 H 0.09 1.37 7.65 -51.93 -0.40 0.97 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.05 0.60 6.47 -51.93 -0.34 0.26 16 44 H 0.07 1.08 6.88 -51.93 -0.36 0.72 16 45 H 0.04 0.57 8.13 -51.93 -0.42 0.15 16 46 H 0.04 0.55 8.13 -51.93 -0.42 0.13 16 LS Contribution 323.88 15.07 4.88 4.88 Total: -1.00 -26.59 323.88 -8.89 -35.47 By element: Atomic # 1 Polarization: 15.38 SS G_CDS: -8.18 Total: 7.20 kcal Atomic # 6 Polarization: -24.75 SS G_CDS: -0.69 Total: -25.44 kcal Atomic # 7 Polarization: -38.54 SS G_CDS: 0.12 Total: -38.42 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -26.59 -8.89 -35.47 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125703556.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.766 kcal (2) G-P(sol) polarization free energy of solvation -26.587 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds