Wall clock time and date at job start Mon Mar 30 2020 06:10:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53001 * 109.46815 * 2 1 4 4 H 1.08999 * 109.47339 * 328.66435 * 3 2 1 5 5 C 1.50702 * 109.46989 * 208.66427 * 3 2 1 6 6 H 1.07997 * 120.00394 * 239.99848 * 5 3 2 7 7 C 1.37882 * 119.99917 * 60.00422 * 5 3 2 8 8 N 1.31520 * 119.99866 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00178 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47345 * 359.97438 * 9 7 5 11 11 H 1.48499 * 109.47320 * 119.99450 * 9 7 5 12 12 H 1.48496 * 109.47341 * 239.99787 * 9 7 5 13 13 N 1.46898 * 109.47160 * 88.66888 * 3 2 1 14 14 C 1.46901 * 110.99736 * 294.30134 * 13 3 2 15 15 H 1.09001 * 109.46837 * 61.96814 * 14 13 3 16 16 C 1.53005 * 109.47323 * 301.97012 * 14 13 3 17 17 C 1.52996 * 109.46929 * 300.00023 * 16 14 13 18 18 C 1.53003 * 109.47293 * 299.99854 * 17 16 14 19 19 C 1.53000 * 109.47006 * 59.99865 * 18 17 16 20 20 C 1.52994 * 109.46973 * 181.96889 * 14 13 3 21 21 H 1.09002 * 109.47142 * 180.02562 * 20 14 13 22 22 C 1.52998 * 109.47556 * 299.99901 * 20 14 13 23 23 C 1.52997 * 109.47668 * 181.57029 * 22 20 14 24 24 C 1.53004 * 109.47073 * 301.57458 * 22 20 14 25 25 H 1.09000 * 109.47050 * 311.94689 * 1 2 3 26 26 H 1.09001 * 109.47040 * 191.95576 * 1 2 3 27 27 H 1.08995 * 109.47743 * 71.94872 * 1 2 3 28 28 H 1.08998 * 109.47226 * 119.99963 * 2 1 3 29 29 H 1.09006 * 109.46539 * 240.00488 * 2 1 3 30 30 H 0.97002 * 119.99561 * 180.02562 * 8 7 5 31 31 H 1.00903 * 110.99838 * 170.35246 * 13 3 2 32 32 H 1.08997 * 109.47046 * 60.00093 * 16 14 13 33 33 H 1.09002 * 109.47015 * 180.02562 * 16 14 13 34 34 H 1.09001 * 109.46834 * 179.97438 * 17 16 14 35 35 H 1.09002 * 109.47276 * 60.00155 * 17 16 14 36 36 H 1.08998 * 109.46805 * 300.00603 * 18 17 16 37 37 H 1.08995 * 109.47144 * 180.02562 * 18 17 16 38 38 H 1.08997 * 109.47039 * 179.97438 * 19 18 17 39 39 H 1.09002 * 109.46747 * 60.00198 * 19 18 17 40 40 H 1.09006 * 109.46794 * 61.57111 * 22 20 14 41 41 H 1.09006 * 109.46946 * 60.00175 * 23 22 20 42 42 H 1.08996 * 109.47436 * 179.97438 * 23 22 20 43 43 H 1.08994 * 109.47306 * 300.00723 * 23 22 20 44 44 H 1.08998 * 109.46844 * 68.30630 * 24 22 20 45 45 H 1.09001 * 109.46677 * 188.30266 * 24 22 20 46 46 H 1.08994 * 109.47367 * 308.30391 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3335 2.0777 -0.5344 5 6 3.3828 1.5006 -0.6815 6 1 4.2483 1.8532 -0.1403 7 6 3.5064 1.1037 -1.9962 8 7 2.4525 0.6739 -2.6552 9 14 5.1710 1.1749 -2.8408 10 1 6.1874 1.6907 -1.8889 11 1 5.5577 -0.1871 -3.2885 12 1 5.0912 2.0784 -4.0166 13 7 2.1728 1.9149 1.3846 14 6 0.8608 2.0004 2.0398 15 1 0.4101 1.0088 2.0811 16 6 -0.0467 2.9404 1.2435 17 6 0.5861 4.3322 1.1855 18 6 0.7598 4.8731 2.6062 19 6 1.6671 3.9331 3.4024 20 6 1.0345 2.5413 3.4604 21 1 0.0610 2.6043 3.9467 22 6 1.9419 1.6014 4.2567 23 6 2.0840 2.1213 5.6885 24 6 1.3283 0.2000 4.2815 25 1 -0.3633 0.6869 0.7643 26 1 -0.3633 -1.0054 0.2129 27 1 -0.3634 0.3184 -0.9770 28 1 1.8934 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8901 30 1 2.5396 0.3943 -3.5799 31 1 2.6529 2.8017 1.4196 32 1 -0.1704 2.5550 0.2315 33 1 -1.0200 3.0042 1.7300 34 1 -0.0602 5.0017 0.6179 35 1 1.5596 4.2688 0.6993 36 1 -0.2137 4.9365 3.0923 37 1 1.2101 5.8648 2.5648 38 1 1.7912 4.3187 4.4143 39 1 2.6406 3.8697 2.9162 40 1 2.9242 1.5597 3.7861 41 1 1.1016 2.1630 6.1591 42 1 2.7300 1.4514 6.2559 43 1 2.5210 3.1197 5.6709 44 1 1.3626 -0.2294 3.2802 45 1 1.8931 -0.4317 4.9672 46 1 0.2925 0.2626 4.6147 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000125703556.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:36 Heat of formation + Delta-G solvation = -44.074518 kcal Electronic energy + Delta-G solvation = -21005.426356 eV Core-core repulsion = 18314.015270 eV Total energy + Delta-G solvation = -2691.411086 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.95152 -37.22522 -35.67259 -34.11164 -32.09483 -30.89913 -30.05111 -27.85202 -27.50589 -24.52146 -23.83759 -23.06261 -21.53474 -20.57421 -19.39706 -18.49032 -17.37145 -16.44714 -15.92463 -15.68065 -15.57514 -14.73247 -14.57217 -14.37012 -14.10118 -13.96634 -13.84471 -13.77394 -13.12711 -12.97542 -12.91667 -12.87577 -12.74567 -12.52166 -12.33470 -12.08302 -11.87470 -11.86403 -11.77125 -11.57168 -11.42099 -11.19849 -11.13806 -10.78227 -10.69110 -10.44652 -10.33710 -8.72614 -8.06708 -6.17785 1.39111 1.41743 1.52590 2.44103 3.21550 3.75533 3.87472 3.98487 4.04424 4.24928 4.36758 4.39706 4.54045 4.59571 4.63178 4.68179 4.71044 4.74898 4.83753 4.85850 4.90601 4.94349 4.99777 5.09779 5.14288 5.16519 5.18661 5.26368 5.28614 5.36881 5.38444 5.40488 5.50601 5.54672 5.57360 5.61587 5.71466 5.76301 5.78140 5.87061 6.01122 6.41648 6.71864 6.98261 7.14579 7.51776 8.97939 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.021447 B = 0.006952 C = 0.006768 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1305.244544 B = 4026.478478 C = 4136.066938 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.096 4.096 3 C 0.226 3.774 4 H -0.022 1.022 5 C -0.524 4.524 6 H 0.050 0.950 7 C 0.013 3.987 8 N -0.914 5.914 9 Si 0.951 3.049 10 H -0.270 1.270 11 H -0.283 1.283 12 H -0.283 1.283 13 N -0.670 5.670 14 C 0.085 3.915 15 H 0.077 0.923 16 C -0.155 4.155 17 C -0.118 4.118 18 C -0.109 4.109 19 C -0.115 4.115 20 C -0.065 4.065 21 H 0.076 0.924 22 C -0.082 4.082 23 C -0.142 4.142 24 C -0.141 4.141 25 H 0.070 0.930 26 H 0.045 0.955 27 H 0.026 0.974 28 H 0.033 0.967 29 H 0.049 0.951 30 H 0.258 0.742 31 H 0.325 0.675 32 H 0.043 0.957 33 H 0.070 0.930 34 H 0.057 0.943 35 H 0.038 0.962 36 H 0.071 0.929 37 H 0.066 0.934 38 H 0.080 0.920 39 H 0.049 0.951 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.052 0.948 43 H 0.059 0.941 44 H 0.038 0.962 45 H 0.052 0.948 46 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.771 4.975 13.868 15.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.135 4.135 3 C 0.117 3.883 4 H -0.005 1.005 5 C -0.563 4.563 6 H 0.068 0.932 7 C -0.186 4.186 8 N -0.554 5.554 9 Si 0.778 3.222 10 H -0.194 1.194 11 H -0.209 1.209 12 H -0.209 1.209 13 N -0.302 5.302 14 C -0.025 4.025 15 H 0.095 0.905 16 C -0.195 4.195 17 C -0.156 4.156 18 C -0.146 4.146 19 C -0.152 4.152 20 C -0.083 4.083 21 H 0.094 0.906 22 C -0.101 4.101 23 C -0.199 4.199 24 C -0.198 4.198 25 H 0.089 0.911 26 H 0.064 0.936 27 H 0.045 0.955 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.067 0.933 31 H 0.144 0.856 32 H 0.061 0.939 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.056 0.944 36 H 0.090 0.910 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.068 0.932 40 H 0.077 0.923 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.078 0.922 44 H 0.058 0.942 45 H 0.071 0.929 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.665 4.278 13.947 15.316 hybrid contribution 0.488 0.502 -1.753 1.887 sum -4.177 4.780 12.194 13.748 Atomic orbital electron populations 1.22070 0.97315 1.00632 1.00386 1.21335 0.93848 0.99132 0.99194 1.18852 0.93593 0.91611 0.84215 1.00489 1.21604 0.95789 1.42512 0.96397 0.93178 1.25614 0.99560 0.95332 0.98065 1.70090 1.30175 1.44740 1.10383 0.85609 0.80783 0.77481 0.78336 1.19393 1.20894 1.20896 1.60864 1.18216 1.32911 1.18175 1.21812 0.89395 0.97702 0.93566 0.90502 1.22275 1.00026 0.96552 1.00605 1.21461 0.99881 0.96177 0.98041 1.21483 1.00434 0.98514 0.94182 1.21630 0.98460 0.94579 1.00540 1.21171 0.98985 0.94500 0.93678 0.90551 1.20948 0.99149 0.94426 0.95536 1.21861 1.01747 1.00994 0.95273 1.21783 1.00485 0.96709 1.00822 0.91099 0.93564 0.95471 0.94840 0.93214 0.93297 0.85587 0.93876 0.91117 0.92400 0.94355 0.90990 0.91484 0.90127 0.93194 0.92345 0.92219 0.92918 0.92239 0.94245 0.92857 0.92455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.14 8.77 71.98 0.63 -5.51 16 2 C -0.10 -4.71 5.00 30.60 0.15 -4.55 16 3 C 0.23 11.21 2.03 44.17 0.09 11.30 16 4 H -0.02 -1.22 5.72 -2.39 -0.01 -1.23 16 5 C -0.52 -29.16 8.70 25.60 0.22 -28.93 16 6 H 0.05 2.80 7.81 -2.91 -0.02 2.77 16 7 C 0.01 0.72 5.10 84.65 0.43 1.16 16 8 N -0.91 -53.22 11.52 21.45 0.25 -52.97 16 9 Si 0.95 44.57 29.54 68.60 2.03 46.60 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 12 H -0.28 -13.01 7.11 99.48 0.71 -12.31 16 13 N -0.67 -27.31 5.15 -473.31 -2.44 -29.74 16 14 C 0.09 2.83 1.46 44.92 0.07 2.90 16 15 H 0.08 2.71 3.84 -2.39 -0.01 2.70 16 16 C -0.16 -5.12 4.15 30.59 0.13 -4.99 16 17 C -0.12 -3.61 5.66 30.59 0.17 -3.44 16 18 C -0.11 -2.59 5.92 30.60 0.18 -2.41 16 19 C -0.11 -2.80 4.63 30.59 0.14 -2.66 16 20 C -0.06 -1.70 1.59 -10.80 -0.02 -1.71 16 21 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 22 C -0.08 -2.13 2.32 -10.79 -0.03 -2.16 16 23 C -0.14 -2.87 8.87 71.98 0.64 -2.23 16 24 C -0.14 -3.70 8.55 71.98 0.62 -3.08 16 25 H 0.07 2.67 3.48 -2.39 -0.01 2.66 16 26 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 27 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.03 1.59 8.05 -2.39 -0.02 1.57 16 29 H 0.05 2.78 5.91 -2.38 -0.01 2.77 16 30 H 0.26 14.36 8.31 -92.71 -0.77 13.59 16 31 H 0.33 13.32 5.12 -89.69 -0.46 12.87 16 32 H 0.04 1.71 5.04 -2.39 -0.01 1.69 16 33 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.04 1.39 6.81 -2.39 -0.02 1.37 16 36 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 37 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.08 1.63 6.47 -2.39 -0.02 1.61 16 39 H 0.05 1.42 6.53 -2.39 -0.02 1.40 16 40 H 0.06 1.84 7.65 -2.38 -0.02 1.83 16 41 H 0.06 1.07 8.14 -2.38 -0.02 1.05 16 42 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.06 1.13 6.47 -2.39 -0.02 1.11 16 44 H 0.04 1.24 6.88 -2.39 -0.02 1.22 16 45 H 0.05 1.28 8.13 -2.39 -0.02 1.26 16 46 H 0.06 1.32 8.13 -2.39 -0.02 1.30 16 Total: -1.00 -58.73 323.88 3.75 -54.98 By element: Atomic # 1 Polarization: 26.98 SS G_CDS: 0.48 Total: 27.46 kcal Atomic # 6 Polarization: -49.76 SS G_CDS: 3.43 Total: -46.33 kcal Atomic # 7 Polarization: -80.52 SS G_CDS: -2.19 Total: -82.71 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 2.03 Total: 46.60 kcal Total: -58.73 3.75 -54.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000125703556.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.905 kcal (2) G-P(sol) polarization free energy of solvation -58.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds