Wall clock time and date at job start Mon Mar 30 2020 06:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46752 * 2 1 4 4 H 1.08999 * 109.47136 * 54.32488 * 3 2 1 5 5 C 1.50710 * 109.46789 * 174.31710 * 3 2 1 6 6 H 1.07997 * 119.99608 * 120.00124 * 5 3 2 7 7 C 1.37869 * 120.00171 * 300.00390 * 5 3 2 8 8 N 1.31517 * 120.00360 * 179.97438 * 7 5 3 9 9 Si 1.86807 * 120.00051 * 359.97438 * 7 5 3 10 10 H 1.48504 * 109.47100 * 89.99767 * 9 7 5 11 11 H 1.48498 * 109.47130 * 210.00192 * 9 7 5 12 12 H 1.48504 * 109.46773 * 330.00115 * 9 7 5 13 13 N 1.46895 * 109.47770 * 294.31750 * 3 2 1 14 14 C 1.46893 * 111.00453 * 154.43365 * 13 3 2 15 15 H 1.09000 * 109.47189 * 33.85784 * 14 13 3 16 16 C 1.53001 * 109.47143 * 273.86068 * 14 13 3 17 17 C 1.53001 * 109.47715 * 153.86110 * 14 13 3 18 18 C 1.53006 * 109.46745 * 295.00231 * 17 14 13 19 19 C 1.52994 * 109.46910 * 179.97438 * 18 17 14 20 20 C 1.55235 * 110.46865 * 289.80477 * 19 18 17 21 21 C 1.54889 * 102.59043 * 203.39663 * 20 19 18 22 22 C 1.54269 * 104.31259 * 37.93228 * 21 20 19 23 23 C 1.53877 * 106.59780 * 336.32633 * 22 21 20 24 24 H 1.09000 * 109.47084 * 65.34026 * 1 2 3 25 25 H 1.09000 * 109.47344 * 185.33853 * 1 2 3 26 26 H 1.08997 * 109.47492 * 305.33728 * 1 2 3 27 27 H 1.09000 * 109.46900 * 240.00638 * 2 1 3 28 28 H 1.08994 * 109.46776 * 120.00032 * 2 1 3 29 29 H 0.96994 * 120.00247 * 179.97438 * 8 7 5 30 30 H 1.00903 * 110.99653 * 30.47781 * 13 3 2 31 31 H 1.08998 * 109.47191 * 304.73541 * 16 14 13 32 32 H 1.08999 * 109.47428 * 64.73258 * 16 14 13 33 33 H 1.09003 * 109.47417 * 184.73390 * 16 14 13 34 34 H 1.08997 * 109.47282 * 175.00130 * 17 14 13 35 35 H 1.09002 * 109.46760 * 54.99643 * 17 14 13 36 36 H 1.09002 * 109.47256 * 59.99174 * 18 17 14 37 37 H 1.09002 * 109.47112 * 299.99805 * 18 17 14 38 38 H 1.08996 * 110.43640 * 52.46135 * 19 18 17 39 39 H 1.09002 * 110.89781 * 85.10600 * 20 19 18 40 40 H 1.08999 * 110.77158 * 321.62864 * 20 19 18 41 41 H 1.08999 * 110.48629 * 279.18976 * 21 20 19 42 42 H 1.08997 * 110.48881 * 156.67716 * 21 20 19 43 43 H 1.08998 * 110.03379 * 95.60817 * 22 21 20 44 44 H 1.09005 * 110.03235 * 216.99307 * 22 21 20 45 45 H 1.08997 * 110.03428 * 119.28646 * 23 22 21 46 46 H 1.09002 * 110.03352 * 240.71659 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5960 1.9848 0.8348 5 6 3.5404 1.4448 0.1407 6 1 4.1544 1.8864 -0.6303 7 6 4.1294 0.8833 1.2536 8 7 5.4388 0.8849 1.3762 9 14 3.0674 0.1202 2.5876 10 1 2.8489 -1.3171 2.2846 11 1 3.7505 0.2512 3.8996 12 1 1.7585 0.8198 2.6389 13 7 1.6655 2.0944 -1.2620 14 6 1.5716 3.5507 -1.0948 15 1 2.3139 3.8816 -0.3684 16 6 0.1721 3.9178 -0.5972 17 6 1.8314 4.2362 -2.4377 18 6 3.2735 3.9711 -2.8751 19 6 3.5331 4.6560 -4.2183 20 6 2.7557 3.9371 -5.3534 21 6 3.5675 4.3223 -6.6150 22 6 5.0368 4.2972 -6.1455 23 6 5.0149 4.5093 -4.6216 24 1 -0.3633 0.4288 -0.9339 25 1 -0.3634 -1.0232 0.0956 26 1 -0.3634 0.5944 0.8383 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 5.8531 0.4902 2.1594 30 1 0.8026 1.7154 -1.6226 31 1 -0.5742 3.5136 -1.2810 32 1 0.0185 3.4988 0.3972 33 1 0.0750 5.0026 -0.5533 34 1 1.6748 5.3099 -2.3340 35 1 1.1459 3.8396 -3.1867 36 1 3.4302 2.8974 -2.9787 37 1 3.9590 4.3676 -2.1261 38 1 3.2535 5.7084 -4.1692 39 1 1.7341 4.3111 -5.4224 40 1 2.7636 2.8575 -5.2038 41 1 3.2928 5.3207 -6.9553 42 1 3.4082 3.5925 -7.4088 43 1 5.4879 3.3335 -6.3818 44 1 5.5964 5.0992 -6.6269 45 1 5.4554 3.6486 -4.1184 46 1 5.5637 5.4148 -4.3627 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136958510.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:35 Heat of formation + Delta-G solvation = -37.623495 kcal Electronic energy + Delta-G solvation = -19855.464651 eV Core-core repulsion = 17164.333303 eV Total energy + Delta-G solvation = -2691.131349 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -38.36470 -37.18974 -34.28420 -32.02937 -31.34702 -28.92892 -28.48945 -26.81120 -26.56428 -22.75332 -22.37535 -20.44644 -19.84196 -19.71067 -19.34241 -16.65875 -15.65894 -15.30826 -14.75844 -14.55849 -14.26484 -13.77204 -13.23959 -13.17746 -13.02609 -12.72245 -12.63046 -12.07116 -11.99213 -11.76839 -11.64513 -11.43461 -11.07409 -11.03042 -10.88586 -10.70022 -10.49193 -10.39022 -10.27134 -10.21362 -10.09824 -9.96955 -9.81328 -9.76689 -9.33544 -9.12166 -8.47814 -7.24105 -5.99331 -3.95192 3.28089 3.38776 3.40521 4.44598 4.78451 4.85676 4.93164 5.10315 5.29197 5.34427 5.57302 5.63132 5.65817 5.74433 5.76934 5.80631 5.83325 5.85689 5.90679 5.93192 5.96644 5.99102 6.05672 6.09086 6.20358 6.28357 6.33511 6.40165 6.44356 6.48671 6.51301 6.56281 6.64396 6.68131 6.74486 6.79365 6.86471 6.98776 7.17764 7.26795 7.78920 8.09082 8.37371 8.83944 9.14526 9.64736 11.14117 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.021497 B = 0.005727 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.212138 B = 4887.947560 C = 5550.555967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.135 4.135 3 C 0.189 3.811 4 H -0.001 1.001 5 C -0.491 4.491 6 H 0.082 0.918 7 C 0.065 3.935 8 N -0.903 5.903 9 Si 0.880 3.120 10 H -0.280 1.280 11 H -0.299 1.299 12 H -0.269 1.269 13 N -0.666 5.666 14 C 0.085 3.915 15 H 0.083 0.917 16 C -0.179 4.179 17 C -0.098 4.098 18 C -0.102 4.102 19 C -0.091 4.091 20 C -0.117 4.117 21 C -0.126 4.126 22 C -0.124 4.124 23 C -0.123 4.123 24 H 0.050 0.950 25 H 0.043 0.957 26 H 0.044 0.956 27 H 0.067 0.933 28 H 0.052 0.948 29 H 0.261 0.739 30 H 0.317 0.683 31 H 0.047 0.953 32 H 0.050 0.950 33 H 0.051 0.949 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.083 0.917 37 H 0.057 0.943 38 H 0.063 0.937 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.058 0.942 42 H 0.058 0.942 43 H 0.060 0.940 44 H 0.055 0.945 45 H 0.069 0.931 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.569 6.301 -10.609 14.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.173 4.173 3 C 0.081 3.919 4 H 0.017 0.983 5 C -0.529 4.529 6 H 0.100 0.900 7 C -0.135 4.135 8 N -0.542 5.542 9 Si 0.711 3.289 10 H -0.207 1.207 11 H -0.227 1.227 12 H -0.194 1.194 13 N -0.296 5.296 14 C -0.026 4.026 15 H 0.101 0.899 16 C -0.238 4.238 17 C -0.136 4.136 18 C -0.139 4.139 19 C -0.109 4.109 20 C -0.155 4.155 21 C -0.163 4.163 22 C -0.162 4.162 23 C -0.160 4.160 24 H 0.069 0.931 25 H 0.062 0.938 26 H 0.063 0.937 27 H 0.086 0.914 28 H 0.070 0.930 29 H 0.071 0.929 30 H 0.134 0.866 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.070 0.930 34 H 0.066 0.934 35 H 0.072 0.928 36 H 0.102 0.898 37 H 0.076 0.924 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.079 0.921 44 H 0.074 0.926 45 H 0.088 0.912 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -6.753 6.265 -10.728 14.140 hybrid contribution -1.322 -0.454 1.412 1.987 sum -8.075 5.810 -9.316 13.629 Atomic orbital electron populations 1.21906 0.98308 1.00390 1.00695 1.22118 0.92854 1.00700 1.01658 1.19627 0.96733 0.89049 0.86528 0.98304 1.21073 0.89214 1.36980 1.05642 0.89954 1.24957 0.94694 0.96130 0.97757 1.69886 1.08890 1.46162 1.29238 0.86977 0.80784 0.79761 0.81350 1.20722 1.22655 1.19421 1.60591 1.36255 1.02061 1.30691 1.21537 0.94807 0.89578 0.96633 0.89878 1.22535 0.99131 1.01052 1.01090 1.21514 0.97274 0.98089 0.96742 1.21512 0.95932 1.02191 0.94310 1.22100 0.94308 0.98963 0.95560 1.22616 0.98001 1.00869 0.93976 1.22360 0.95438 1.00667 0.97877 1.22124 0.96597 1.01148 0.96290 1.22211 0.96969 1.01805 0.95060 0.93143 0.93782 0.93703 0.91432 0.92987 0.92867 0.86563 0.93357 0.93091 0.93037 0.93378 0.92838 0.89840 0.92439 0.91879 0.92190 0.91063 0.92295 0.92291 0.92118 0.92581 0.91204 0.92464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.66 9.65 37.16 0.36 -2.31 16 2 C -0.14 -2.88 5.01 -26.73 -0.13 -3.02 16 3 C 0.19 4.34 1.43 -68.86 -0.10 4.24 16 4 H 0.00 -0.01 6.29 -51.93 -0.33 -0.34 16 5 C -0.49 -13.58 9.11 -34.44 -0.31 -13.89 16 6 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 7 C 0.07 1.88 5.45 -17.82 -0.10 1.78 16 8 N -0.90 -27.65 13.96 55.43 0.77 -26.88 16 9 Si 0.88 22.01 24.42 -169.99 -4.15 17.86 16 10 H -0.28 -6.85 6.82 56.52 0.39 -6.46 16 11 H -0.30 -7.54 7.11 56.52 0.40 -7.14 16 12 H -0.27 -6.47 6.53 56.52 0.37 -6.10 16 13 N -0.67 -12.97 5.50 -100.96 -0.56 -13.53 16 14 C 0.09 1.50 2.39 -67.72 -0.16 1.33 16 15 H 0.08 1.71 7.65 -51.93 -0.40 1.31 16 16 C -0.18 -2.71 9.17 37.16 0.34 -2.37 16 17 C -0.10 -1.48 4.77 -26.73 -0.13 -1.61 16 18 C -0.10 -1.65 4.45 -26.73 -0.12 -1.77 16 19 C -0.09 -1.22 2.86 -88.77 -0.25 -1.48 16 20 C -0.12 -1.45 5.70 -24.55 -0.14 -1.59 16 21 C -0.13 -1.38 6.82 -25.07 -0.17 -1.55 16 22 C -0.12 -1.43 6.80 -25.61 -0.17 -1.61 16 23 C -0.12 -1.63 6.37 -25.61 -0.16 -1.79 16 24 H 0.05 0.77 6.64 -51.93 -0.34 0.42 16 25 H 0.04 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 28 H 0.05 1.20 3.22 -51.93 -0.17 1.03 16 29 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.32 5.57 6.25 -39.29 -0.25 5.32 16 31 H 0.05 0.66 8.04 -51.93 -0.42 0.24 16 32 H 0.05 0.83 7.58 -51.93 -0.39 0.43 16 33 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.77 7.56 -51.93 -0.39 0.37 16 36 H 0.08 1.57 7.63 -51.93 -0.40 1.17 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 38 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.69 8.06 -51.93 -0.42 0.27 16 40 H 0.07 0.96 7.97 -51.93 -0.41 0.55 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.07 1.04 7.84 -51.93 -0.41 0.63 16 46 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 343.11 15.07 5.17 5.17 Total: -1.00 -28.73 343.11 -9.02 -37.75 By element: Atomic # 1 Polarization: 14.26 SS G_CDS: -9.00 Total: 5.26 kcal Atomic # 6 Polarization: -24.38 SS G_CDS: -1.25 Total: -25.63 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.22 Total: -40.41 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -4.15 Total: 17.86 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -28.73 -9.02 -37.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136958510.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.125 kcal (2) G-P(sol) polarization free energy of solvation -28.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.016 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.748 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds