Wall clock time and date at job start Mon Mar 30 2020 06:12:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46752 * 2 1 4 4 H 1.08999 * 109.47136 * 54.32488 * 3 2 1 5 5 C 1.50710 * 109.46789 * 174.31710 * 3 2 1 6 6 H 1.07997 * 119.99608 * 120.00124 * 5 3 2 7 7 C 1.37869 * 120.00171 * 300.00390 * 5 3 2 8 8 N 1.31517 * 120.00360 * 179.97438 * 7 5 3 9 9 Si 1.86807 * 120.00051 * 359.97438 * 7 5 3 10 10 H 1.48504 * 109.47100 * 89.99767 * 9 7 5 11 11 H 1.48498 * 109.47130 * 210.00192 * 9 7 5 12 12 H 1.48504 * 109.46773 * 330.00115 * 9 7 5 13 13 N 1.46895 * 109.47770 * 294.31750 * 3 2 1 14 14 C 1.46893 * 111.00453 * 154.43365 * 13 3 2 15 15 H 1.09000 * 109.47189 * 33.85784 * 14 13 3 16 16 C 1.53001 * 109.47143 * 273.86068 * 14 13 3 17 17 C 1.53001 * 109.47715 * 153.86110 * 14 13 3 18 18 C 1.53006 * 109.46745 * 295.00231 * 17 14 13 19 19 C 1.52994 * 109.46910 * 179.97438 * 18 17 14 20 20 C 1.55235 * 110.46865 * 289.80477 * 19 18 17 21 21 C 1.54889 * 102.59043 * 203.39663 * 20 19 18 22 22 C 1.54269 * 104.31259 * 37.93228 * 21 20 19 23 23 C 1.53877 * 106.59780 * 336.32633 * 22 21 20 24 24 H 1.09000 * 109.47084 * 65.34026 * 1 2 3 25 25 H 1.09000 * 109.47344 * 185.33853 * 1 2 3 26 26 H 1.08997 * 109.47492 * 305.33728 * 1 2 3 27 27 H 1.09000 * 109.46900 * 240.00638 * 2 1 3 28 28 H 1.08994 * 109.46776 * 120.00032 * 2 1 3 29 29 H 0.96994 * 120.00247 * 179.97438 * 8 7 5 30 30 H 1.00903 * 110.99653 * 30.47781 * 13 3 2 31 31 H 1.08998 * 109.47191 * 304.73541 * 16 14 13 32 32 H 1.08999 * 109.47428 * 64.73258 * 16 14 13 33 33 H 1.09003 * 109.47417 * 184.73390 * 16 14 13 34 34 H 1.08997 * 109.47282 * 175.00130 * 17 14 13 35 35 H 1.09002 * 109.46760 * 54.99643 * 17 14 13 36 36 H 1.09002 * 109.47256 * 59.99174 * 18 17 14 37 37 H 1.09002 * 109.47112 * 299.99805 * 18 17 14 38 38 H 1.08996 * 110.43640 * 52.46135 * 19 18 17 39 39 H 1.09002 * 110.89781 * 85.10600 * 20 19 18 40 40 H 1.08999 * 110.77158 * 321.62864 * 20 19 18 41 41 H 1.08999 * 110.48629 * 279.18976 * 21 20 19 42 42 H 1.08997 * 110.48881 * 156.67716 * 21 20 19 43 43 H 1.08998 * 110.03379 * 95.60817 * 22 21 20 44 44 H 1.09005 * 110.03235 * 216.99307 * 22 21 20 45 45 H 1.08997 * 110.03428 * 119.28646 * 23 22 21 46 46 H 1.09002 * 110.03352 * 240.71659 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.5960 1.9848 0.8348 5 6 3.5404 1.4448 0.1407 6 1 4.1544 1.8864 -0.6303 7 6 4.1294 0.8833 1.2536 8 7 5.4388 0.8849 1.3762 9 14 3.0674 0.1202 2.5876 10 1 2.8489 -1.3171 2.2846 11 1 3.7505 0.2512 3.8996 12 1 1.7585 0.8198 2.6389 13 7 1.6655 2.0944 -1.2620 14 6 1.5716 3.5507 -1.0948 15 1 2.3139 3.8816 -0.3684 16 6 0.1721 3.9178 -0.5972 17 6 1.8314 4.2362 -2.4377 18 6 3.2735 3.9711 -2.8751 19 6 3.5331 4.6560 -4.2183 20 6 2.7557 3.9371 -5.3534 21 6 3.5675 4.3223 -6.6150 22 6 5.0368 4.2972 -6.1455 23 6 5.0149 4.5093 -4.6216 24 1 -0.3633 0.4288 -0.9339 25 1 -0.3634 -1.0232 0.0956 26 1 -0.3634 0.5944 0.8383 27 1 1.8933 -0.5137 -0.8901 28 1 1.8933 -0.5138 0.8899 29 1 5.8531 0.4902 2.1594 30 1 0.8026 1.7154 -1.6226 31 1 -0.5742 3.5136 -1.2810 32 1 0.0185 3.4988 0.3972 33 1 0.0750 5.0026 -0.5533 34 1 1.6748 5.3099 -2.3340 35 1 1.1459 3.8396 -3.1867 36 1 3.4302 2.8974 -2.9787 37 1 3.9590 4.3676 -2.1261 38 1 3.2535 5.7084 -4.1692 39 1 1.7341 4.3111 -5.4224 40 1 2.7636 2.8575 -5.2038 41 1 3.2928 5.3207 -6.9553 42 1 3.4082 3.5925 -7.4088 43 1 5.4879 3.3335 -6.3818 44 1 5.5964 5.0992 -6.6269 45 1 5.4554 3.6486 -4.1184 46 1 5.5637 5.4148 -4.3627 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000136958510.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:12:35 Heat of formation + Delta-G solvation = -54.185547 kcal Electronic energy + Delta-G solvation = -19856.182836 eV Core-core repulsion = 17164.333303 eV Total energy + Delta-G solvation = -2691.849533 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.58568 -38.64879 -35.84261 -34.09524 -32.66699 -30.42333 -29.51443 -28.46364 -27.92182 -24.42904 -23.74239 -21.68465 -21.58719 -20.94961 -20.48287 -18.77152 -17.09978 -16.70172 -16.16943 -15.96611 -15.81785 -15.25012 -14.80079 -14.50762 -14.37311 -14.16529 -14.02892 -13.63333 -13.50235 -13.17468 -12.87240 -12.83858 -12.63747 -12.41996 -12.21806 -12.02853 -11.90684 -11.80066 -11.63510 -11.62461 -11.33998 -11.25954 -11.25678 -11.17081 -11.06851 -10.96797 -10.64404 -8.86835 -8.24314 -6.24306 1.27515 1.32681 1.42541 2.32493 3.08830 3.59106 3.71972 3.84340 3.89521 4.14798 4.28987 4.33565 4.38800 4.39979 4.46049 4.58276 4.62509 4.67856 4.74096 4.79683 4.83232 4.84737 4.88828 4.97613 5.00802 5.06689 5.09751 5.10423 5.16505 5.18086 5.24052 5.27748 5.31671 5.35408 5.42687 5.48276 5.54116 5.60390 5.62352 5.76245 5.81508 6.18008 6.62404 6.84172 7.08596 7.40146 8.93170 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.021497 B = 0.005727 C = 0.005043 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.212138 B = 4887.947560 C = 5550.555967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.136 4.136 3 C 0.198 3.802 4 H -0.009 1.009 5 C -0.490 4.490 6 H 0.034 0.966 7 C 0.005 3.995 8 N -0.954 5.954 9 Si 0.946 3.054 10 H -0.267 1.267 11 H -0.302 1.302 12 H -0.250 1.250 13 N -0.671 5.671 14 C 0.082 3.918 15 H 0.040 0.960 16 C -0.170 4.170 17 C -0.088 4.088 18 C -0.095 4.095 19 C -0.087 4.087 20 C -0.115 4.115 21 C -0.120 4.120 22 C -0.123 4.123 23 C -0.128 4.128 24 H 0.071 0.929 25 H 0.066 0.934 26 H 0.046 0.954 27 H 0.061 0.939 28 H 0.035 0.965 29 H 0.262 0.738 30 H 0.333 0.667 31 H 0.071 0.929 32 H 0.037 0.963 33 H 0.070 0.930 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.047 0.953 37 H 0.024 0.976 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.053 0.947 41 H 0.075 0.925 42 H 0.069 0.931 43 H 0.055 0.945 44 H 0.072 0.928 45 H 0.039 0.961 46 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.958 6.797 -11.779 17.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.174 4.174 3 C 0.088 3.912 4 H 0.008 0.992 5 C -0.529 4.529 6 H 0.052 0.948 7 C -0.191 4.191 8 N -0.596 5.596 9 Si 0.774 3.226 10 H -0.193 1.193 11 H -0.231 1.231 12 H -0.174 1.174 13 N -0.303 5.303 14 C -0.028 4.028 15 H 0.059 0.941 16 C -0.228 4.228 17 C -0.126 4.126 18 C -0.132 4.132 19 C -0.105 4.105 20 C -0.152 4.152 21 C -0.158 4.158 22 C -0.160 4.160 23 C -0.166 4.166 24 H 0.090 0.910 25 H 0.085 0.915 26 H 0.065 0.935 27 H 0.080 0.920 28 H 0.054 0.946 29 H 0.071 0.929 30 H 0.153 0.847 31 H 0.090 0.910 32 H 0.056 0.944 33 H 0.089 0.911 34 H 0.088 0.912 35 H 0.091 0.909 36 H 0.066 0.934 37 H 0.043 0.957 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.072 0.928 41 H 0.094 0.906 42 H 0.088 0.912 43 H 0.074 0.926 44 H 0.091 0.909 45 H 0.058 0.942 46 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -10.175 6.766 -11.922 17.072 hybrid contribution -0.164 -0.546 1.707 1.799 sum -10.339 6.220 -10.215 15.809 Atomic orbital electron populations 1.21826 0.94363 1.02229 1.02000 1.22006 0.96354 0.98450 1.00579 1.19356 0.93279 0.90796 0.87746 0.99170 1.21357 0.91900 1.35488 1.04145 0.94776 1.25797 0.95840 0.97004 1.00449 1.70058 1.11077 1.48123 1.30314 0.85892 0.79494 0.79521 0.77670 1.19334 1.23051 1.17436 1.60420 1.37522 1.03295 1.29102 1.21554 0.95651 0.88447 0.97189 0.94140 1.22413 0.97276 1.02468 1.00687 1.21452 0.96345 0.99174 0.95622 1.21371 0.96467 0.99998 0.95405 1.22063 0.94646 0.99558 0.94223 1.22581 0.98949 0.99653 0.94023 1.22351 0.94149 1.01947 0.97305 1.22126 0.97736 1.01580 0.94590 1.22236 0.96998 1.00748 0.96594 0.90993 0.91506 0.93473 0.92038 0.94629 0.92919 0.84730 0.91042 0.94355 0.91071 0.91202 0.90936 0.93393 0.95715 0.90284 0.90522 0.92805 0.90605 0.91189 0.92569 0.90924 0.94205 0.91960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.49 9.65 71.98 0.69 -3.79 16 2 C -0.14 -5.60 5.01 30.59 0.15 -5.44 16 3 C 0.20 9.12 1.43 44.17 0.06 9.18 16 4 H -0.01 -0.44 6.29 -2.39 -0.02 -0.45 16 5 C -0.49 -28.54 9.11 25.60 0.23 -28.30 16 6 H 0.03 2.25 8.06 -2.91 -0.02 2.23 16 7 C 0.00 0.29 5.45 84.65 0.46 0.75 16 8 N -0.95 -61.45 13.96 21.44 0.30 -61.15 16 9 Si 0.95 46.16 24.42 68.60 1.67 47.84 16 10 H -0.27 -12.39 6.82 99.48 0.68 -11.71 16 11 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 12 H -0.25 -11.33 6.53 99.48 0.65 -10.68 16 13 N -0.67 -26.10 5.50 -473.32 -2.60 -28.70 16 14 C 0.08 2.86 2.39 44.92 0.11 2.97 16 15 H 0.04 1.75 7.65 -2.39 -0.02 1.73 16 16 C -0.17 -4.68 9.17 71.98 0.66 -4.02 16 17 C -0.09 -2.57 4.77 30.60 0.15 -2.42 16 18 C -0.09 -3.21 4.45 30.59 0.14 -3.07 16 19 C -0.09 -2.30 2.86 -9.60 -0.03 -2.32 16 20 C -0.11 -2.64 5.70 32.01 0.18 -2.46 16 21 C -0.12 -2.34 6.82 31.67 0.22 -2.13 16 22 C -0.12 -2.71 6.80 31.32 0.21 -2.50 16 23 C -0.13 -3.49 6.37 31.32 0.20 -3.29 16 24 H 0.07 1.88 6.64 -2.39 -0.02 1.86 16 25 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 26 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 27 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 28 H 0.04 1.58 3.22 -2.39 -0.01 1.57 16 29 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 30 H 0.33 11.01 6.25 -89.69 -0.56 10.45 16 31 H 0.07 1.66 8.04 -2.39 -0.02 1.64 16 32 H 0.04 1.15 7.58 -2.39 -0.02 1.13 16 33 H 0.07 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 35 H 0.07 1.88 7.56 -2.39 -0.02 1.86 16 36 H 0.05 1.94 7.63 -2.39 -0.02 1.93 16 37 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 39 H 0.08 1.52 8.06 -2.39 -0.02 1.50 16 40 H 0.05 1.42 7.97 -2.39 -0.02 1.40 16 41 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 42 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.06 1.28 8.14 -2.39 -0.02 1.26 16 44 H 0.07 1.37 8.14 -2.38 -0.02 1.35 16 45 H 0.04 1.29 7.84 -2.39 -0.02 1.27 16 46 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 Total: -1.00 -66.63 343.11 3.07 -63.56 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 0.26 Total: 25.30 kcal Atomic # 6 Polarization: -50.29 SS G_CDS: 3.44 Total: -46.85 kcal Atomic # 7 Polarization: -87.55 SS G_CDS: -2.31 Total: -89.86 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.67 Total: 47.84 kcal Total: -66.63 3.07 -63.56 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136958510.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.379 kcal (2) G-P(sol) polarization free energy of solvation -66.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds