Wall clock time and date at job start Mon Mar 30 2020 07:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.46962 * 2 1 4 4 C 1.53002 * 109.47045 * 120.00005 * 2 1 3 5 5 C 1.53000 * 109.46956 * 65.00136 * 4 2 1 6 6 C 1.53000 * 109.47282 * 179.97438 * 5 4 2 7 7 C 1.53116 * 109.52351 * 174.99741 * 6 5 4 8 8 C 1.53043 * 109.27629 * 177.56030 * 7 6 5 9 9 N 1.46845 * 109.52372 * 300.82069 * 8 7 6 10 10 C 1.46898 * 111.00313 * 185.83944 * 9 8 7 11 11 H 1.09003 * 109.47385 * 54.99796 * 10 9 8 12 12 C 1.53007 * 109.47058 * 295.00582 * 10 9 8 13 13 C 1.50694 * 109.47326 * 175.00191 * 10 9 8 14 14 H 1.08002 * 119.99997 * 116.78872 * 13 10 9 15 15 C 1.37870 * 120.00215 * 296.78281 * 13 10 9 16 16 N 1.31509 * 120.00265 * 174.47860 * 15 13 10 17 17 Si 1.86808 * 119.99864 * 354.48403 * 15 13 10 18 18 H 1.48495 * 109.47136 * 84.88839 * 17 15 13 19 19 H 1.48497 * 109.46804 * 204.88899 * 17 15 13 20 20 H 1.48496 * 109.46650 * 324.88790 * 17 15 13 21 21 C 1.46849 * 111.19679 * 61.74431 * 9 8 7 22 22 C 1.53044 * 109.52175 * 298.25655 * 21 9 8 23 23 H 1.09000 * 109.47392 * 179.97438 * 1 2 3 24 24 H 1.09006 * 109.47337 * 299.99614 * 1 2 3 25 25 H 1.08998 * 109.47416 * 60.00005 * 1 2 3 26 26 H 1.09002 * 109.47169 * 239.99906 * 2 1 3 27 27 H 1.08999 * 109.47081 * 179.97438 * 3 2 1 28 28 H 1.08989 * 109.47587 * 300.00089 * 3 2 1 29 29 H 1.08999 * 109.47280 * 60.00495 * 3 2 1 30 30 H 1.09001 * 109.47361 * 305.00220 * 4 2 1 31 31 H 1.09002 * 109.46952 * 184.99520 * 4 2 1 32 32 H 1.08997 * 109.47479 * 59.99954 * 5 4 2 33 33 H 1.09004 * 109.47161 * 299.99865 * 5 4 2 34 34 H 1.09002 * 109.57361 * 54.84190 * 6 5 4 35 35 H 1.09001 * 109.50443 * 57.62205 * 7 6 5 36 36 H 1.09000 * 109.50857 * 297.49825 * 7 6 5 37 37 H 1.09005 * 109.46394 * 180.80709 * 8 7 6 38 38 H 1.08999 * 109.46305 * 60.83879 * 8 7 6 39 39 H 1.09002 * 109.46482 * 296.51815 * 12 10 9 40 40 H 1.09000 * 109.47537 * 56.52012 * 12 10 9 41 41 H 1.09001 * 109.47198 * 176.52601 * 12 10 9 42 42 H 0.97005 * 120.00463 * 180.02562 * 16 15 13 43 43 H 1.08997 * 109.46458 * 58.27424 * 21 9 8 44 44 H 1.09003 * 109.46445 * 178.24138 * 21 9 8 45 45 H 1.08999 * 109.50317 * 299.23900 * 22 21 9 46 46 H 1.08999 * 109.50022 * 179.11924 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 1.6352 -2.1955 1.1879 6 6 2.1457 -2.9169 2.4368 7 6 1.6359 -4.3607 2.4380 8 6 2.1993 -5.0944 3.6573 9 7 3.6667 -5.0746 3.6072 10 6 4.2414 -5.8876 4.6873 11 1 3.8331 -6.8971 4.6389 12 6 3.8923 -5.2607 6.0387 13 6 5.7392 -5.9436 4.5314 14 1 6.3776 -5.5226 5.2941 15 6 6.2947 -6.5324 3.4153 16 7 7.5952 -6.4858 3.2256 17 14 5.1999 -7.3962 2.1724 18 1 4.6643 -6.4014 1.2088 19 1 5.9917 -8.4175 1.4408 20 1 4.0734 -8.0565 2.8797 21 6 4.1810 -3.6998 3.6528 22 6 3.6768 -2.9245 2.4334 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5138 -0.8900 26 1 1.8933 -0.5139 -0.8900 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6767 1.9563 0.8900 30 1 1.6053 -0.2618 2.1370 31 1 3.1263 -0.6444 1.2951 32 1 2.0698 -2.6550 0.3002 33 1 0.5489 -2.2724 1.1420 34 1 1.7859 -2.4029 3.3282 35 1 1.9633 -4.8631 1.5277 36 1 0.5469 -4.3622 2.4836 37 1 1.8497 -6.1269 3.6534 38 1 1.8602 -4.5998 4.5675 39 1 4.3526 -4.2754 6.1117 40 1 2.8101 -5.1636 6.1255 41 1 4.2656 -5.8965 6.8415 42 1 7.9860 -6.8997 2.4402 43 1 3.8326 -3.2117 4.5630 44 1 5.2708 -3.7193 3.6457 45 1 4.0363 -3.4042 1.5231 46 1 4.0459 -1.8998 2.4757 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000162112051.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:50:46 Heat of formation + Delta-G solvation = -51.954357 kcal Electronic energy + Delta-G solvation = -20036.189501 eV Core-core repulsion = 17344.436719 eV Total energy + Delta-G solvation = -2691.752782 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.36504 -38.07465 -36.03174 -34.19058 -31.96436 -31.55698 -29.19279 -27.96302 -27.49091 -25.43987 -24.02795 -22.66391 -21.32798 -20.77359 -20.13325 -18.82554 -16.77419 -16.32800 -16.14133 -15.69982 -15.49924 -15.19800 -14.98572 -14.72811 -14.60869 -14.19639 -13.99162 -13.60745 -13.35694 -13.07383 -12.98428 -12.83849 -12.76822 -12.55954 -12.48125 -12.07257 -12.00814 -11.91536 -11.74378 -11.65098 -11.51691 -11.37678 -11.32796 -11.10617 -10.83175 -10.73626 -10.64193 -8.79114 -8.22786 -6.30989 1.44562 1.53313 1.61466 2.50915 3.03217 3.52989 3.76751 3.91437 3.98741 4.11513 4.18980 4.25065 4.38095 4.51647 4.53727 4.57609 4.64983 4.68795 4.72284 4.75552 4.80160 4.84815 4.88488 4.91297 4.94015 5.01905 5.07033 5.10978 5.14769 5.22187 5.25355 5.29387 5.30654 5.31502 5.39183 5.44237 5.54427 5.56733 5.61077 5.67057 5.69302 6.15992 6.54518 6.70899 6.88486 7.43465 8.90487 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.026629 B = 0.005320 C = 0.005126 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1051.217347 B = 5262.263266 C = 5461.143074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.098 4.098 3 C -0.147 4.147 4 C -0.113 4.113 5 C -0.105 4.105 6 C -0.078 4.078 7 C -0.106 4.106 8 C 0.045 3.955 9 N -0.548 5.548 10 C 0.172 3.828 11 H 0.035 0.965 12 C -0.154 4.154 13 C -0.510 4.510 14 H 0.030 0.970 15 C 0.035 3.965 16 N -0.948 5.948 17 Si 0.972 3.028 18 H -0.267 1.267 19 H -0.315 1.315 20 H -0.263 1.263 21 C 0.073 3.927 22 C -0.105 4.105 23 H 0.057 0.943 24 H 0.056 0.944 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.056 0.944 30 H 0.064 0.936 31 H 0.054 0.946 32 H 0.050 0.950 33 H 0.075 0.925 34 H 0.072 0.928 35 H 0.050 0.950 36 H 0.086 0.914 37 H 0.061 0.939 38 H 0.038 0.962 39 H 0.041 0.959 40 H 0.058 0.942 41 H 0.048 0.952 42 H 0.263 0.737 43 H 0.027 0.973 44 H 0.045 0.955 45 H 0.043 0.957 46 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.135 12.228 -5.381 21.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.117 4.117 3 C -0.204 4.204 4 C -0.150 4.150 5 C -0.143 4.143 6 C -0.097 4.097 7 C -0.144 4.144 8 C -0.083 4.083 9 N -0.274 5.274 10 C 0.065 3.935 11 H 0.053 0.947 12 C -0.213 4.213 13 C -0.549 4.549 14 H 0.049 0.951 15 C -0.163 4.163 16 N -0.588 5.588 17 Si 0.801 3.199 18 H -0.192 1.192 19 H -0.244 1.244 20 H -0.187 1.187 21 C -0.055 4.055 22 C -0.143 4.143 23 H 0.076 0.924 24 H 0.075 0.925 25 H 0.075 0.925 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.075 0.925 30 H 0.082 0.918 31 H 0.073 0.927 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.090 0.910 35 H 0.069 0.931 36 H 0.104 0.896 37 H 0.079 0.921 38 H 0.056 0.944 39 H 0.060 0.940 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.071 0.929 43 H 0.046 0.954 44 H 0.064 0.936 45 H 0.062 0.938 46 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -16.871 11.984 -5.919 21.524 hybrid contribution 0.333 -0.342 0.328 0.579 sum -16.538 11.642 -5.591 20.984 Atomic orbital electron populations 1.21868 0.94663 1.01956 1.01830 1.21124 0.96435 0.96202 0.97921 1.21835 1.00750 0.95849 1.01984 1.21664 1.00550 0.94781 0.98028 1.21597 1.01126 0.94954 0.96585 1.21148 0.94118 0.95426 0.98991 1.21626 1.00199 0.95189 0.97359 1.22172 0.88321 0.99967 0.97796 1.62248 1.05772 1.11834 1.47527 1.19646 0.93258 0.93108 0.87470 0.94669 1.22145 0.99923 1.00480 0.98728 1.21100 0.90865 1.37555 1.05335 0.95137 1.25694 0.95536 0.95746 0.99368 1.70088 1.12863 1.46380 1.29472 0.85281 0.78141 0.77254 0.79237 1.19245 1.24382 1.18743 1.21736 0.99164 0.88079 0.96517 1.21651 0.96329 0.99041 0.97242 0.92423 0.92536 0.92474 0.91978 0.93206 0.92208 0.92499 0.91751 0.92748 0.93085 0.90604 0.91011 0.93134 0.89600 0.92054 0.94374 0.93992 0.92290 0.93314 0.92870 0.95442 0.93599 0.93826 0.90982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.95 71.98 0.64 -1.50 16 2 C -0.10 -1.67 2.92 -10.79 -0.03 -1.70 16 3 C -0.15 -2.29 9.19 71.98 0.66 -1.63 16 4 C -0.11 -2.20 4.45 30.59 0.14 -2.06 16 5 C -0.11 -2.24 4.44 30.59 0.14 -2.11 16 6 C -0.08 -2.04 2.25 -10.72 -0.02 -2.06 16 7 C -0.11 -2.94 5.38 30.65 0.16 -2.78 16 8 C 0.05 1.51 5.03 86.33 0.43 1.94 16 9 N -0.55 -23.04 2.82 -875.48 -2.47 -25.52 16 10 C 0.17 8.01 1.70 44.17 0.08 8.09 16 11 H 0.04 1.70 6.81 -2.39 -0.02 1.68 16 12 C -0.15 -6.11 8.42 71.98 0.61 -5.50 16 13 C -0.51 -29.28 7.70 25.60 0.20 -29.08 16 14 H 0.03 1.94 7.99 -2.91 -0.02 1.91 16 15 C 0.04 2.10 5.46 84.65 0.46 2.56 16 16 N -0.95 -60.27 13.96 21.44 0.30 -59.97 16 17 Si 0.97 49.05 26.33 68.60 1.81 50.85 16 18 H -0.27 -13.28 7.11 99.48 0.71 -12.58 16 19 H -0.31 -15.91 7.11 99.48 0.71 -15.20 16 20 H -0.26 -12.55 6.56 99.48 0.65 -11.90 16 21 C 0.07 2.93 4.68 86.33 0.40 3.33 16 22 C -0.10 -3.43 5.08 30.65 0.16 -3.28 16 23 H 0.06 0.85 6.57 -2.39 -0.02 0.83 16 24 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 28 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.06 1.19 8.14 -2.39 -0.02 1.18 16 31 H 0.05 1.18 6.63 -2.39 -0.02 1.17 16 32 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.08 1.39 6.57 -2.39 -0.02 1.38 16 34 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 35 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 37 H 0.06 2.03 8.08 -2.38 -0.02 2.02 16 38 H 0.04 1.18 6.65 -2.39 -0.02 1.16 16 39 H 0.04 1.69 6.72 -2.39 -0.02 1.67 16 40 H 0.06 1.98 6.49 -2.39 -0.02 1.96 16 41 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 42 H 0.26 15.81 8.31 -92.70 -0.77 15.04 16 43 H 0.03 1.04 6.70 -2.39 -0.02 1.02 16 44 H 0.05 2.23 6.92 -2.39 -0.02 2.22 16 45 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 46 H 0.07 2.12 6.70 -2.39 -0.02 2.10 16 Total: -1.00 -64.42 336.50 4.50 -59.92 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: 0.84 Total: 10.49 kcal Atomic # 6 Polarization: -39.80 SS G_CDS: 4.02 Total: -35.78 kcal Atomic # 7 Polarization: -83.32 SS G_CDS: -2.17 Total: -85.49 kcal Atomic # 14 Polarization: 49.05 SS G_CDS: 1.81 Total: 50.85 kcal Total: -64.42 4.50 -59.92 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000162112051.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.967 kcal (2) G-P(sol) polarization free energy of solvation -64.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds