Wall clock time and date at job start Mon Mar 30 2020 07:51:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47109 * 2 1 4 4 C 1.50697 * 109.47303 * 239.99210 * 2 1 3 5 5 H 1.07991 * 120.00449 * 239.72787 * 4 2 1 6 6 C 1.37885 * 119.99686 * 60.00618 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48493 * 109.47326 * 90.00142 * 8 6 4 10 10 H 1.48506 * 109.46545 * 209.99892 * 8 6 4 11 11 H 1.48498 * 109.47210 * 329.99603 * 8 6 4 12 12 N 1.46904 * 109.46700 * 119.99641 * 2 1 3 13 13 C 1.47307 * 111.00053 * 274.99971 * 12 2 1 14 14 C 1.52699 * 109.08384 * 274.39455 * 13 12 2 15 15 C 1.52460 * 110.77494 * 179.49001 * 14 13 12 16 16 C 1.53132 * 110.00102 * 287.58967 * 15 14 13 17 17 C 1.54487 * 107.62254 * 170.99502 * 15 14 13 18 18 C 1.51738 * 112.61930 * 52.12827 * 15 14 13 19 19 C 1.51742 * 116.03198 * 316.70099 * 18 15 14 20 20 C 1.53137 * 111.11318 * 279.30852 * 19 18 15 21 21 C 1.54501 * 107.94769 * 161.91994 * 19 18 15 22 22 C 1.52459 * 112.64430 * 43.25200 * 19 18 15 23 23 H 1.08998 * 109.47109 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47204 * 300.00358 * 1 2 3 25 25 H 1.09006 * 109.46531 * 60.00353 * 1 2 3 26 26 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 27 27 H 1.00899 * 111.00123 * 38.95102 * 12 2 1 28 28 H 1.08656 * 108.76797 * 35.00059 * 13 12 2 29 29 H 1.09301 * 109.28846 * 300.14519 * 14 13 12 30 30 H 1.09308 * 109.27299 * 58.85480 * 14 13 12 31 31 H 1.09001 * 109.46820 * 185.40695 * 16 15 14 32 32 H 1.09008 * 109.47063 * 305.40164 * 16 15 14 33 33 H 1.08998 * 109.47340 * 65.39798 * 16 15 14 34 34 H 1.08999 * 109.47109 * 298.18650 * 17 15 14 35 35 H 1.09003 * 109.46740 * 58.19187 * 17 15 14 36 36 H 1.08999 * 109.46695 * 178.18655 * 17 15 14 37 37 H 1.10228 * 108.63279 * 194.03251 * 18 15 14 38 38 H 1.10262 * 108.55726 * 79.21986 * 18 15 14 39 39 H 1.09000 * 109.47222 * 185.43401 * 20 19 18 40 40 H 1.08996 * 109.47017 * 305.43154 * 20 19 18 41 41 H 1.09005 * 109.47390 * 65.43005 * 20 19 18 42 42 H 1.09001 * 109.47046 * 298.17262 * 21 19 18 43 43 H 1.09005 * 109.46739 * 58.16537 * 21 19 18 44 44 H 1.08996 * 109.47077 * 178.17015 * 21 19 18 45 45 H 1.09314 * 109.41777 * 187.43645 * 22 19 18 46 46 H 1.09299 * 109.44693 * 68.56182 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6569 -1.5860 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9389 0.8266 -2.6035 8 14 2.3284 -1.1158 -4.0078 9 1 1.3555 -2.1612 -4.4148 10 1 2.4911 -0.1346 -5.1106 11 1 3.6388 -1.7479 -3.7104 12 7 2.0196 -0.6925 1.1995 13 6 2.0826 0.2252 2.3501 14 6 3.4177 0.9659 2.3255 15 6 3.5185 1.9379 3.4958 16 6 2.5961 3.1375 3.2614 17 6 4.9672 2.4731 3.5357 18 6 3.2271 1.2768 4.8302 19 6 2.0420 0.3295 4.8594 20 6 0.7243 1.0985 4.9917 21 6 2.1790 -0.5659 6.1110 22 6 1.9918 -0.5854 3.6409 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3632 0.5138 -0.8901 26 1 0.7043 1.1577 -3.4845 27 1 1.4495 -1.4978 1.4102 28 1 1.2563 0.9275 2.2827 29 1 4.2338 0.2412 2.3832 30 1 3.5070 1.5175 1.3860 31 1 2.7456 3.8710 4.0536 32 1 2.8279 3.5912 2.2977 33 1 1.5583 2.8042 3.2658 34 1 5.6558 1.6453 3.7045 35 1 5.2029 2.9543 2.5865 36 1 5.0646 3.1975 4.3444 37 1 3.0676 2.0635 5.5856 38 1 4.1257 0.7247 5.1519 39 1 -0.0982 0.3926 5.1070 40 1 0.7696 1.7493 5.8648 41 1 0.5637 1.7008 4.0975 42 1 3.0944 -1.1532 6.0392 43 1 2.2179 0.0598 7.0028 44 1 1.3215 -1.2357 6.1741 45 1 1.0550 -1.1488 3.6478 46 1 2.8240 -1.2928 3.6824 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163723106.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:38 Heat of formation + Delta-G solvation = -53.045914 kcal Electronic energy + Delta-G solvation = -20529.883000 eV Core-core repulsion = 17838.082885 eV Total energy + Delta-G solvation = -2691.800115 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.94621 -37.50286 -35.85649 -34.65576 -31.96208 -28.70904 -28.37654 -27.42801 -27.40807 -27.27262 -27.03240 -22.72813 -21.61091 -20.50757 -18.85172 -18.25997 -16.76366 -16.51419 -15.83438 -15.66219 -15.34291 -15.06820 -14.75088 -14.56042 -14.10868 -13.95340 -13.67610 -13.48692 -13.12616 -12.94119 -12.90974 -12.83161 -12.65600 -12.49840 -12.46520 -12.39343 -12.17105 -12.08601 -11.90052 -11.78028 -11.65033 -11.44098 -11.12898 -11.05916 -10.79093 -10.67492 -10.47427 -8.88877 -8.08700 -6.19763 1.41819 1.42360 1.53665 2.44077 3.19132 3.48652 3.70822 3.80834 4.07615 4.14548 4.23078 4.27788 4.37746 4.52317 4.60147 4.69027 4.75492 4.78316 4.81946 4.85824 4.89131 4.90530 4.97005 5.00269 5.03935 5.08104 5.09104 5.12341 5.20333 5.22173 5.27406 5.29361 5.36477 5.44368 5.50476 5.56895 5.61940 5.65702 5.67985 5.70884 5.87770 6.31023 6.71183 6.89789 6.99111 7.50484 8.96722 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.027334 B = 0.005684 C = 0.005341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1024.101885 B = 4924.634390 C = 5241.057482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.222 3.778 3 H -0.002 1.002 4 C -0.513 4.513 5 H 0.053 0.947 6 C 0.007 3.993 7 N -0.924 5.924 8 Si 0.960 3.040 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.689 5.689 13 C 0.093 3.907 14 C -0.083 4.083 15 C -0.054 4.054 16 C -0.142 4.142 17 C -0.140 4.140 18 C -0.087 4.087 19 C -0.053 4.053 20 C -0.143 4.143 21 C -0.138 4.138 22 C -0.097 4.097 23 H 0.031 0.969 24 H 0.020 0.980 25 H 0.060 0.940 26 H 0.260 0.740 27 H 0.328 0.672 28 H 0.023 0.977 29 H 0.054 0.946 30 H 0.024 0.976 31 H 0.072 0.928 32 H 0.034 0.966 33 H 0.050 0.950 34 H 0.056 0.944 35 H 0.041 0.959 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.068 0.932 41 H 0.043 0.957 42 H 0.054 0.946 43 H 0.066 0.934 44 H 0.054 0.946 45 H 0.055 0.945 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.901 1.555 17.686 17.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.113 3.887 3 H 0.016 0.984 4 C -0.552 4.552 5 H 0.071 0.929 6 C -0.190 4.190 7 N -0.564 5.564 8 Si 0.786 3.214 9 H -0.200 1.200 10 H -0.210 1.210 11 H -0.196 1.196 12 N -0.318 5.318 13 C -0.016 4.016 14 C -0.122 4.122 15 C -0.055 4.055 16 C -0.199 4.199 17 C -0.197 4.197 18 C -0.124 4.124 19 C -0.054 4.054 20 C -0.200 4.200 21 C -0.196 4.196 22 C -0.135 4.135 23 H 0.050 0.950 24 H 0.039 0.961 25 H 0.079 0.921 26 H 0.069 0.931 27 H 0.145 0.855 28 H 0.041 0.959 29 H 0.072 0.928 30 H 0.042 0.958 31 H 0.091 0.909 32 H 0.054 0.946 33 H 0.069 0.931 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.089 0.911 37 H 0.092 0.908 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.062 0.938 42 H 0.074 0.926 43 H 0.085 0.915 44 H 0.074 0.926 45 H 0.074 0.926 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.516 1.742 17.395 17.832 hybrid contribution -0.862 -0.148 -1.322 1.585 sum 2.655 1.594 16.073 16.369 Atomic orbital electron populations 1.22235 1.00373 0.99027 0.99759 1.18864 0.89602 0.92519 0.87739 0.98397 1.21478 1.30073 1.12448 0.91202 0.92922 1.25729 0.95558 0.95870 1.01891 1.70019 1.38063 1.24467 1.23860 0.85531 0.78788 0.78232 0.78897 1.20008 1.20973 1.19614 1.60846 1.57659 1.09559 1.03778 1.21315 0.96096 0.93946 0.90274 1.21360 0.97041 0.97237 0.96518 1.20360 0.96019 0.94581 0.94545 1.22035 0.99530 0.97393 1.00937 1.22248 0.94954 1.01035 1.01513 1.21265 0.97509 0.98376 0.95296 1.20323 0.95413 0.95103 0.94558 1.22055 0.96299 1.00083 1.01591 1.22238 1.01719 0.99106 0.96516 1.21583 1.01582 0.97507 0.92834 0.95037 0.96061 0.92081 0.93092 0.85479 0.95889 0.92773 0.95757 0.90939 0.94646 0.93062 0.92526 0.93971 0.91102 0.90823 0.91790 0.92838 0.91275 0.93774 0.92649 0.91515 0.92645 0.92630 0.91774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.73 8.92 71.98 0.64 -7.09 16 2 C 0.22 11.61 2.38 44.17 0.11 11.72 16 3 H 0.00 -0.11 7.12 -2.39 -0.02 -0.13 16 4 C -0.51 -29.45 8.84 25.60 0.23 -29.23 16 5 H 0.05 3.04 7.81 -2.92 -0.02 3.02 16 6 C 0.01 0.42 5.31 84.66 0.45 0.87 16 7 N -0.92 -54.67 11.31 21.45 0.24 -54.43 16 8 Si 0.96 45.11 29.54 68.60 2.03 47.13 16 9 H -0.27 -12.48 7.11 99.48 0.71 -11.77 16 10 H -0.28 -13.07 7.11 99.48 0.71 -12.36 16 11 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 12 N -0.69 -30.10 6.02 -473.85 -2.85 -32.96 16 13 C 0.09 3.37 2.12 44.64 0.09 3.46 16 14 C -0.08 -2.92 4.00 30.32 0.12 -2.80 16 15 C -0.05 -1.44 0.71 -52.23 -0.04 -1.47 16 16 C -0.14 -3.79 8.00 72.03 0.58 -3.21 16 17 C -0.14 -3.26 8.08 72.49 0.59 -2.68 16 18 C -0.09 -1.88 3.48 29.77 0.10 -1.77 16 19 C -0.05 -1.18 0.71 -52.22 -0.04 -1.22 16 20 C -0.14 -3.11 7.98 72.03 0.58 -2.54 16 21 C -0.14 -2.46 8.06 72.49 0.58 -1.87 16 22 C -0.10 -2.74 3.79 30.31 0.11 -2.62 16 23 H 0.03 1.49 8.13 -2.39 -0.02 1.47 16 24 H 0.02 0.94 7.41 -2.39 -0.02 0.92 16 25 H 0.06 3.40 6.06 -2.38 -0.01 3.38 16 26 H 0.26 14.63 8.31 -92.71 -0.77 13.86 16 27 H 0.33 13.57 8.06 -89.69 -0.72 12.85 16 28 H 0.02 0.91 5.14 -2.57 -0.01 0.90 16 29 H 0.05 1.93 8.11 -2.23 -0.02 1.92 16 30 H 0.02 1.01 7.37 -2.22 -0.02 1.00 16 31 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 32 H 0.03 1.05 8.11 -2.38 -0.02 1.03 16 33 H 0.05 1.45 4.67 -2.39 -0.01 1.44 16 34 H 0.06 1.26 8.05 -2.39 -0.02 1.24 16 35 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 37 H 0.07 1.34 7.93 -1.73 -0.01 1.32 16 38 H 0.06 1.29 7.59 -1.71 -0.01 1.28 16 39 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.07 1.24 8.07 -2.39 -0.02 1.22 16 41 H 0.04 1.12 4.62 -2.38 -0.01 1.11 16 42 H 0.05 0.97 8.08 -2.39 -0.02 0.95 16 43 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 44 H 0.05 0.96 8.14 -2.39 -0.02 0.94 16 45 H 0.05 1.55 8.07 -2.22 -0.02 1.53 16 46 H 0.06 1.83 8.10 -2.23 -0.02 1.81 16 Total: -1.00 -61.37 336.21 3.73 -57.64 By element: Atomic # 1 Polarization: 22.86 SS G_CDS: 0.21 Total: 23.07 kcal Atomic # 6 Polarization: -44.55 SS G_CDS: 4.10 Total: -40.45 kcal Atomic # 7 Polarization: -84.77 SS G_CDS: -2.61 Total: -87.38 kcal Atomic # 14 Polarization: 45.11 SS G_CDS: 2.03 Total: 47.13 kcal Total: -61.37 3.73 -57.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163723106.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.590 kcal (2) G-P(sol) polarization free energy of solvation -61.365 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds