Wall clock time and date at job start Mon Mar 30 2020 07:16:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08990 * 109.47297 * 2 1 4 4 N 1.46904 * 109.46960 * 120.00044 * 2 1 3 5 5 C 1.46901 * 110.99866 * 274.99594 * 4 2 1 6 6 C 1.52998 * 109.47153 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.47055 * 180.02562 * 6 5 4 8 8 H 1.08001 * 119.99946 * 359.97438 * 7 6 5 9 9 C 1.37877 * 120.00018 * 180.02562 * 7 6 5 10 10 N 1.31513 * 120.00012 * 359.97438 * 9 7 6 11 11 Si 1.86802 * 120.00001 * 179.97438 * 9 7 6 12 12 H 1.48496 * 109.47040 * 0.02562 * 11 9 7 13 13 H 1.48509 * 109.46894 * 119.99898 * 11 9 7 14 14 H 1.48499 * 109.47026 * 239.99886 * 11 9 7 15 15 C 1.53002 * 109.47305 * 239.99456 * 2 1 3 16 16 H 1.09006 * 109.46796 * 54.05473 * 15 2 1 17 17 C 1.53001 * 109.47167 * 294.05867 * 15 2 1 18 18 C 1.52998 * 109.47241 * 174.05091 * 15 2 1 19 19 C 1.52993 * 109.47181 * 303.93068 * 18 15 2 20 20 C 1.52998 * 109.47181 * 179.97438 * 19 18 15 21 21 C 1.52999 * 109.47151 * 59.99597 * 20 19 18 22 22 C 1.52999 * 109.47698 * 300.00313 * 21 20 19 23 23 C 1.52999 * 109.47151 * 183.92665 * 18 15 2 24 24 H 1.08997 * 109.46929 * 296.64452 * 1 2 3 25 25 H 1.08999 * 109.46733 * 56.64383 * 1 2 3 26 26 H 1.09005 * 109.47073 * 176.64145 * 1 2 3 27 27 H 1.00896 * 110.99924 * 151.04453 * 4 2 1 28 28 H 1.09004 * 109.46517 * 60.00140 * 5 4 2 29 29 H 1.08997 * 109.47527 * 300.00389 * 5 4 2 30 30 H 1.09002 * 109.47183 * 299.99848 * 6 5 4 31 31 H 1.08996 * 109.47304 * 60.00340 * 6 5 4 32 32 H 0.96999 * 119.99908 * 179.97438 * 10 9 7 33 33 H 1.09003 * 109.46864 * 179.97438 * 17 15 2 34 34 H 1.08997 * 109.46708 * 299.99489 * 17 15 2 35 35 H 1.09000 * 109.47678 * 59.99713 * 17 15 2 36 36 H 1.08998 * 109.46753 * 63.92967 * 18 15 2 37 37 H 1.08998 * 109.47195 * 299.99628 * 19 18 15 38 38 H 1.08995 * 109.47253 * 59.99901 * 19 18 15 39 39 H 1.08998 * 109.47333 * 300.00391 * 20 19 18 40 40 H 1.09002 * 109.47569 * 179.97438 * 20 19 18 41 41 H 1.09000 * 109.47471 * 180.02562 * 21 20 19 42 42 H 1.09007 * 109.46984 * 60.00694 * 21 20 19 43 43 H 1.08998 * 109.47010 * 300.00190 * 22 21 20 44 44 H 1.08995 * 109.47543 * 179.97438 * 22 21 20 45 45 H 1.09002 * 109.47703 * 300.00926 * 23 18 15 46 46 H 1.09010 * 109.46767 * 60.00216 * 23 18 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 2.0825 0.2226 2.3469 6 6 2.5950 -0.5331 3.5745 7 6 2.6589 0.4055 4.7517 8 1 2.3638 1.4380 4.6358 9 6 3.0949 -0.0535 5.9765 10 7 3.4547 -1.3106 6.1176 11 14 3.1748 1.1102 7.4356 12 1 2.7186 2.4602 7.0176 13 1 2.2954 0.6050 8.5204 14 1 4.5732 1.1904 7.9289 15 6 2.0400 -0.7214 -1.2492 16 1 1.5924 -0.2727 -2.1360 17 6 1.6556 -2.2005 -1.1766 18 6 3.5627 -0.5932 -1.3262 19 6 3.9519 0.8862 -1.3000 20 6 5.4746 1.0143 -1.3764 21 6 5.9755 0.3780 -2.6744 22 6 5.5863 -1.1014 -2.7007 23 6 4.0631 -1.2294 -2.6245 24 1 -0.3633 0.4609 0.9185 25 1 -0.3633 0.5651 -0.8584 26 1 -0.3633 -1.0259 -0.0602 27 1 2.9172 -1.1205 1.0288 28 1 1.0870 0.6163 2.5525 29 1 2.7588 1.0462 2.1182 30 1 1.9182 -1.3564 3.8031 31 1 3.5903 -0.9272 3.3692 32 1 3.7618 -1.6334 6.9792 33 1 2.0186 -2.7143 -2.0668 34 1 2.1033 -2.6491 -0.2898 35 1 0.5709 -2.2918 -1.1218 36 1 4.0137 -1.1027 -0.4746 37 1 3.5010 1.3956 -2.1516 38 1 3.5955 1.3394 -0.3750 39 1 5.9253 0.5049 -0.5246 40 1 5.7520 2.0683 -1.3582 41 1 7.0604 0.4689 -2.7287 42 1 5.5249 0.8874 -3.5263 43 1 6.0369 -1.6108 -1.8489 44 1 5.9428 -1.5546 -3.6256 45 1 3.7857 -2.2833 -2.6433 46 1 3.6120 -0.7199 -3.4761 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000184087875.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:16:58 Heat of formation + Delta-G solvation = -50.088208 kcal Electronic energy + Delta-G solvation = -19801.413492 eV Core-core repulsion = 17109.741633 eV Total energy + Delta-G solvation = -2691.671859 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.56309 -36.78858 -33.97100 -32.42847 -30.87673 -30.46957 -28.53194 -27.81794 -24.72133 -23.67338 -22.50676 -21.48116 -20.53699 -19.79028 -18.84230 -16.24440 -15.84571 -15.40261 -15.02168 -14.40435 -14.16236 -14.14281 -13.74405 -13.45294 -13.15093 -12.72771 -12.52532 -12.35867 -12.10460 -11.91664 -11.66785 -11.56786 -11.38906 -11.12178 -11.06092 -10.96287 -10.79225 -10.74686 -10.64609 -10.47066 -10.29283 -9.95800 -9.81830 -9.65102 -9.26896 -9.07865 -8.32409 -7.66404 -5.96941 -3.99041 3.32656 3.39970 3.44149 4.46456 4.59330 4.64833 4.73348 4.85255 5.05463 5.11240 5.22177 5.31548 5.39156 5.43631 5.48973 5.51943 5.57336 5.65962 5.69111 5.80405 5.85254 5.93269 5.96222 6.02368 6.06446 6.11985 6.14245 6.18775 6.22690 6.30929 6.33311 6.41724 6.43086 6.48434 6.52075 6.65191 6.71116 7.07054 7.59889 7.79860 7.89773 8.06729 8.15501 8.48495 9.08705 9.64629 11.14571 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.021545 B = 0.004822 C = 0.004343 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1299.300769 B = 5804.828677 C = 6445.411497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.083 3.917 3 H 0.041 0.959 4 N -0.683 5.683 5 C 0.067 3.933 6 C 0.026 3.974 7 C -0.519 4.519 8 H 0.054 0.946 9 C 0.058 3.942 10 N -0.894 5.894 11 Si 0.891 3.109 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.284 1.284 15 C -0.086 4.086 16 H 0.067 0.933 17 C -0.142 4.142 18 C -0.086 4.086 19 C -0.117 4.117 20 C -0.121 4.121 21 C -0.118 4.118 22 C -0.121 4.121 23 C -0.112 4.112 24 H 0.054 0.946 25 H 0.044 0.956 26 H 0.060 0.940 27 H 0.334 0.666 28 H 0.056 0.944 29 H 0.012 0.988 30 H 0.024 0.976 31 H 0.012 0.988 32 H 0.259 0.741 33 H 0.045 0.955 34 H 0.066 0.934 35 H 0.055 0.945 36 H 0.073 0.927 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.058 0.942 41 H 0.057 0.943 42 H 0.057 0.943 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.064 0.936 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.965 1.443 -19.335 19.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.027 4.027 3 H 0.059 0.941 4 N -0.316 5.316 5 C -0.062 4.062 6 C -0.012 4.012 7 C -0.558 4.558 8 H 0.072 0.928 9 C -0.143 4.143 10 N -0.533 5.533 11 Si 0.719 3.281 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.211 1.211 15 C -0.105 4.105 16 H 0.085 0.915 17 C -0.199 4.199 18 C -0.104 4.104 19 C -0.154 4.154 20 C -0.158 4.158 21 C -0.155 4.155 22 C -0.158 4.158 23 C -0.149 4.149 24 H 0.073 0.927 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.154 0.846 28 H 0.074 0.926 29 H 0.030 0.970 30 H 0.043 0.957 31 H 0.030 0.970 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.085 0.915 35 H 0.074 0.926 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.084 0.916 39 H 0.082 0.918 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.081 0.919 44 H 0.075 0.925 45 H 0.083 0.917 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.409 1.078 -19.037 19.072 hybrid contribution 0.866 1.181 0.713 1.629 sum 1.274 2.259 -18.324 18.507 Atomic orbital electron populations 1.21824 0.95397 1.01870 1.00661 1.21577 0.95408 0.95815 0.89947 0.94089 1.60688 1.33076 1.33936 1.03919 1.22166 0.99315 0.93525 0.91152 1.19056 0.96107 0.95768 0.90231 1.21228 1.43619 0.96353 0.94598 0.92804 1.24995 0.95480 0.95057 0.98810 1.69984 1.44678 1.14340 1.24305 0.86559 0.77600 0.81184 0.82790 1.19793 1.20994 1.21059 1.21326 0.94595 0.96975 0.97589 0.91506 1.21807 1.01474 0.95089 1.01529 1.21237 0.95164 0.95893 0.98142 1.21660 0.95520 0.96355 1.01902 1.21537 0.96106 1.00345 0.97843 1.21525 1.00106 0.95951 0.97938 1.21553 0.96317 0.96435 1.01502 1.21608 0.95184 1.00712 0.97416 0.92705 0.93649 0.92095 0.84614 0.92552 0.96974 0.95742 0.96986 0.93105 0.93557 0.91480 0.92649 0.90903 0.92371 0.91567 0.91790 0.92325 0.92455 0.92383 0.91905 0.92453 0.91749 0.92388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.95 9.28 37.16 0.34 -1.60 16 2 C 0.08 1.20 2.06 -67.71 -0.14 1.06 16 3 H 0.04 0.62 5.69 -51.93 -0.30 0.33 16 4 N -0.68 -12.14 5.50 -106.73 -0.59 -12.72 16 5 C 0.07 1.43 5.42 -3.82 -0.02 1.41 16 6 C 0.03 0.68 5.23 -27.88 -0.15 0.54 16 7 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 8 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.89 -27.24 13.29 55.43 0.74 -26.50 16 11 Si 0.89 21.92 29.54 -169.99 -5.02 16.90 16 12 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 13 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 15 C -0.09 -1.03 1.72 -90.62 -0.16 -1.19 16 16 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 17 C -0.14 -1.70 8.47 37.16 0.31 -1.38 16 18 C -0.09 -0.99 1.54 -90.62 -0.14 -1.13 16 19 C -0.12 -1.37 4.76 -26.74 -0.13 -1.50 16 20 C -0.12 -1.34 5.92 -26.73 -0.16 -1.50 16 21 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 22 C -0.12 -1.16 5.93 -26.70 -0.16 -1.32 16 23 C -0.11 -1.12 4.94 -26.70 -0.13 -1.25 16 24 H 0.05 0.84 7.38 -51.93 -0.38 0.46 16 25 H 0.04 0.54 8.14 -51.93 -0.42 0.11 16 26 H 0.06 0.85 6.45 -51.93 -0.33 0.51 16 27 H 0.33 5.87 6.09 -39.29 -0.24 5.63 16 28 H 0.06 1.23 7.38 -51.93 -0.38 0.84 16 29 H 0.01 0.26 8.06 -51.93 -0.42 -0.16 16 30 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 32 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 33 H 0.05 0.48 6.53 -51.93 -0.34 0.14 16 34 H 0.07 0.91 7.12 -51.93 -0.37 0.54 16 35 H 0.05 0.67 6.53 -51.93 -0.34 0.33 16 36 H 0.07 0.97 6.60 -51.93 -0.34 0.63 16 37 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.07 0.89 6.23 -51.93 -0.32 0.57 16 39 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.53 8.14 -51.92 -0.42 0.11 16 43 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 45 H 0.06 0.63 6.53 -51.93 -0.34 0.29 16 46 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 LS Contribution 339.74 15.07 5.12 5.12 Total: -1.00 -29.37 339.74 -9.56 -38.93 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -8.72 Total: 1.13 kcal Atomic # 6 Polarization: -21.76 SS G_CDS: -1.09 Total: -22.85 kcal Atomic # 7 Polarization: -39.37 SS G_CDS: 0.15 Total: -39.22 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.37 -9.56 -38.93 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000184087875.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.160 kcal (2) G-P(sol) polarization free energy of solvation -29.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.561 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds