Wall clock time and date at job start Mon Mar 30 2020 06:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53002 * 109.46969 * 2 1 4 4 C 1.52995 * 109.47577 * 119.99548 * 2 1 3 5 5 H 1.08996 * 109.47575 * 300.00570 * 4 2 1 6 6 C 1.52996 * 109.47577 * 179.97438 * 4 2 1 7 7 C 1.52997 * 109.47165 * 180.02562 * 6 4 2 8 8 C 1.52999 * 109.47592 * 60.00300 * 7 6 4 9 9 H 1.09000 * 109.47160 * 59.99666 * 8 7 6 10 10 C 1.52997 * 109.47592 * 179.97438 * 8 7 6 11 11 C 1.53006 * 109.46626 * 300.00035 * 8 7 6 12 12 C 1.52997 * 109.47164 * 59.99702 * 11 8 7 13 13 H 1.09001 * 109.47230 * 179.97438 * 12 11 8 14 14 N 1.46906 * 109.47344 * 60.00116 * 12 11 8 15 15 C 1.46901 * 111.00169 * 84.99469 * 14 12 11 16 16 C 1.52995 * 109.47042 * 180.02562 * 15 14 12 17 17 C 1.50703 * 109.47112 * 180.02562 * 16 15 14 18 18 H 1.07994 * 119.99981 * 0.02562 * 17 16 15 19 19 C 1.37881 * 120.00040 * 179.97438 * 17 16 15 20 20 N 1.31511 * 119.99608 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 119.99707 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46956 * 90.00869 * 21 19 17 23 23 H 1.48506 * 109.46842 * 210.00239 * 21 19 17 24 24 H 1.48495 * 109.47571 * 330.00216 * 21 19 17 25 25 H 1.09001 * 109.46997 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47054 * 300.00097 * 1 2 3 27 27 H 1.09004 * 109.47298 * 60.00221 * 1 2 3 28 28 H 1.08999 * 109.47631 * 240.00393 * 2 1 3 29 29 H 1.09002 * 109.47067 * 180.02562 * 3 2 1 30 30 H 1.09004 * 109.46930 * 300.00004 * 3 2 1 31 31 H 1.08992 * 109.47461 * 59.99786 * 3 2 1 32 32 H 1.09000 * 109.47054 * 300.00355 * 6 4 2 33 33 H 1.09001 * 109.46997 * 60.00088 * 6 4 2 34 34 H 1.09000 * 109.47140 * 299.99954 * 7 6 4 35 35 H 1.09002 * 109.47045 * 180.02562 * 7 6 4 36 36 H 1.09001 * 109.47375 * 179.97438 * 10 8 7 37 37 H 1.09002 * 109.46777 * 300.00227 * 10 8 7 38 38 H 1.09000 * 109.47140 * 59.99654 * 10 8 7 39 39 H 1.09001 * 109.46998 * 179.97438 * 11 8 7 40 40 H 1.09000 * 109.47050 * 299.99699 * 11 8 7 41 41 H 1.00905 * 110.99598 * 321.04726 * 14 12 11 42 42 H 1.08997 * 109.47146 * 300.00714 * 15 14 12 43 43 H 1.08995 * 109.46621 * 60.00157 * 15 14 12 44 44 H 1.08997 * 109.47542 * 300.00238 * 16 15 14 45 45 H 1.09004 * 109.47496 * 60.00224 * 16 15 14 46 46 H 0.97002 * 119.99462 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0401 -0.7211 1.2492 5 1 1.6767 -0.2074 2.1392 6 6 3.5700 -0.7217 1.2489 7 6 4.0800 -1.4434 2.4978 8 6 3.5696 -2.8857 2.4977 9 1 3.9326 -3.3995 1.6075 10 6 4.0802 -3.6076 3.7463 11 6 2.0396 -2.8851 2.4980 12 6 1.5296 -2.1635 1.2491 13 1 0.4396 -2.1634 1.2491 14 7 2.0187 -2.8559 0.0493 15 6 1.1346 -3.9722 -0.3115 16 6 1.6757 -4.6675 -1.5623 17 6 0.7684 -5.8124 -1.9328 18 1 -0.1068 -6.0226 -1.3362 19 6 1.0552 -6.5907 -3.0342 20 7 2.1208 -6.3343 -3.7610 21 14 -0.0699 -8.0092 -3.4939 22 1 -1.1240 -7.5246 -4.4208 23 1 0.7229 -9.0742 -4.1593 24 1 -0.7028 -8.5567 -2.2672 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.8934 -0.5137 -0.8900 29 1 3.1299 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6766 1.9564 0.8899 32 1 3.9330 -1.2358 0.3589 33 1 3.9337 0.3059 1.2486 34 1 3.7171 -0.9296 3.3880 35 1 5.1700 -1.4433 2.4978 36 1 3.7161 -4.6350 3.7464 37 1 5.1702 -3.6079 3.7456 38 1 3.7176 -3.0939 4.6367 39 1 1.6759 -3.9127 2.4975 40 1 1.6766 -2.3714 3.3882 41 1 2.9680 -3.1732 0.1768 42 1 1.0951 -4.6852 0.5119 43 1 0.1328 -3.5921 -0.5113 44 1 1.7155 -3.9547 -2.3859 45 1 2.6776 -5.0476 -1.3621 46 1 2.3228 -6.8821 -4.5357 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000226670107.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:38 Heat of formation + Delta-G solvation = -48.723776 kcal Electronic energy + Delta-G solvation = -20046.526444 eV Core-core repulsion = 17354.913751 eV Total energy + Delta-G solvation = -2691.612693 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.78148 -35.48240 -34.87024 -32.76793 -30.94070 -30.24730 -27.58965 -26.94855 -26.05802 -23.92287 -22.08601 -21.77156 -20.55946 -19.48668 -18.70710 -16.23239 -15.63415 -15.46490 -14.54016 -14.26070 -14.11107 -13.90441 -13.81273 -13.39737 -12.96402 -12.76902 -12.46090 -12.27069 -12.17714 -11.98879 -11.86950 -11.61781 -11.23736 -11.07311 -10.93701 -10.89964 -10.85007 -10.76779 -10.53394 -10.27713 -10.17056 -10.00984 -9.75084 -9.60813 -9.25222 -9.09412 -8.32283 -7.62299 -5.97039 -3.99153 3.33556 3.39609 3.42765 4.46276 4.71325 4.76900 4.86046 5.04480 5.14564 5.15991 5.28983 5.39017 5.42320 5.56457 5.60917 5.67706 5.71510 5.72660 5.77888 5.82305 5.86692 5.95227 6.01840 6.05701 6.10462 6.12186 6.17345 6.21028 6.31738 6.37516 6.41370 6.47562 6.48913 6.58210 6.62135 6.70884 6.88430 7.05718 7.59755 7.79858 7.89669 8.06839 8.15399 8.48312 9.08418 9.64440 11.14394 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.020187 B = 0.005359 C = 0.004647 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.722819 B = 5223.188541 C = 6024.591879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.086 4.086 3 C -0.148 4.148 4 C -0.064 4.064 5 H 0.059 0.941 6 C -0.116 4.116 7 C -0.111 4.111 8 C -0.094 4.094 9 H 0.072 0.928 10 C -0.145 4.145 11 C -0.144 4.144 12 C 0.088 3.912 13 H 0.074 0.926 14 N -0.680 5.680 15 C 0.067 3.933 16 C 0.026 3.974 17 C -0.520 4.520 18 H 0.053 0.947 19 C 0.058 3.942 20 N -0.894 5.894 21 Si 0.891 3.109 22 H -0.280 1.280 23 H -0.287 1.287 24 H -0.275 1.275 25 H 0.059 0.941 26 H 0.042 0.958 27 H 0.047 0.953 28 H 0.089 0.911 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.045 0.955 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.055 0.945 35 H 0.057 0.943 36 H 0.053 0.947 37 H 0.052 0.948 38 H 0.050 0.950 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.335 0.665 42 H 0.012 0.988 43 H 0.055 0.945 44 H 0.024 0.976 45 H 0.011 0.989 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.188 12.415 12.988 18.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.104 4.104 3 C -0.205 4.205 4 C -0.083 4.083 5 H 0.077 0.923 6 C -0.154 4.154 7 C -0.149 4.149 8 C -0.113 4.113 9 H 0.091 0.909 10 C -0.202 4.202 11 C -0.183 4.183 12 C -0.023 4.023 13 H 0.093 0.907 14 N -0.312 5.312 15 C -0.061 4.061 16 C -0.011 4.011 17 C -0.559 4.559 18 H 0.071 0.929 19 C -0.143 4.143 20 N -0.533 5.533 21 Si 0.719 3.281 22 H -0.207 1.207 23 H -0.213 1.213 24 H -0.200 1.200 25 H 0.078 0.922 26 H 0.061 0.939 27 H 0.067 0.933 28 H 0.107 0.893 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.074 0.926 35 H 0.075 0.925 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.155 0.845 42 H 0.031 0.969 43 H 0.073 0.927 44 H 0.042 0.958 45 H 0.030 0.970 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 1.983 12.788 12.387 17.914 hybrid contribution -0.399 -1.550 0.421 1.656 sum 1.584 11.238 12.809 17.113 Atomic orbital electron populations 1.21831 0.96015 1.01863 1.00427 1.21022 0.95134 0.94669 0.99568 1.21920 1.00887 0.96910 1.00807 1.21110 0.95028 0.94893 0.97248 0.92275 1.21619 0.95633 0.99884 0.98251 1.21578 0.99739 0.95216 0.98334 1.21121 0.95562 0.96055 0.98536 0.90927 1.21809 1.00623 1.00259 0.97544 1.22249 0.95443 1.01102 0.99478 1.21605 0.99014 0.93301 0.88343 0.90750 1.60736 1.06176 1.30390 1.33881 1.22140 0.95859 0.89784 0.98356 1.19045 0.95897 0.94496 0.91657 1.21190 1.09807 1.13708 1.11170 0.92879 1.24994 0.95299 0.97658 0.96382 1.69975 1.26042 1.39738 1.17536 0.86614 0.80713 0.82192 0.78582 1.20656 1.21257 1.19972 0.92152 0.93872 0.93342 0.89254 0.92743 0.93286 0.93573 0.90968 0.92327 0.92583 0.92464 0.92797 0.92922 0.93101 0.92065 0.92254 0.84498 0.96941 0.92653 0.95753 0.97030 0.93056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 8.84 37.16 0.33 -1.51 16 2 C -0.09 -1.10 2.35 -90.62 -0.21 -1.31 16 3 C -0.15 -1.63 8.84 37.16 0.33 -1.30 16 4 C -0.06 -0.79 1.60 -90.62 -0.14 -0.93 16 5 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 6 C -0.12 -1.37 4.61 -26.73 -0.12 -1.49 16 7 C -0.11 -1.22 5.20 -26.73 -0.14 -1.36 16 8 C -0.09 -1.14 2.47 -90.62 -0.22 -1.36 16 9 H 0.07 1.00 6.26 -51.93 -0.32 0.68 16 10 C -0.14 -1.57 9.19 37.16 0.34 -1.23 16 11 C -0.14 -1.87 4.80 -26.73 -0.13 -2.00 16 12 C 0.09 1.25 1.95 -67.71 -0.13 1.11 16 13 H 0.07 1.11 6.08 -51.93 -0.32 0.80 16 14 N -0.68 -11.69 5.00 -106.73 -0.53 -12.22 16 15 C 0.07 1.40 5.42 -3.83 -0.02 1.38 16 16 C 0.03 0.69 5.23 -27.88 -0.15 0.55 16 17 C -0.52 -14.87 9.11 -34.44 -0.31 -15.18 16 18 H 0.05 1.48 7.74 -52.49 -0.41 1.07 16 19 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 20 N -0.89 -27.14 13.29 55.43 0.74 -26.40 16 21 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 25 H 0.06 0.86 6.43 -51.93 -0.33 0.52 16 26 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.09 1.38 7.60 -51.93 -0.39 0.99 16 29 H 0.05 0.58 6.43 -51.93 -0.33 0.24 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.96 7.21 -51.93 -0.37 0.59 16 33 H 0.06 0.63 6.43 -51.93 -0.33 0.30 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 37 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.88 7.45 -51.93 -0.39 0.50 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 41 H 0.33 5.78 5.56 -39.29 -0.22 5.56 16 42 H 0.01 0.26 7.43 -51.93 -0.39 -0.13 16 43 H 0.05 1.17 8.05 -51.93 -0.42 0.75 16 44 H 0.02 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.01 0.32 8.14 -51.93 -0.42 -0.11 16 46 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 341.05 15.07 5.14 5.14 Total: -1.00 -28.85 341.05 -9.22 -38.07 By element: Atomic # 1 Polarization: 10.49 SS G_CDS: -8.86 Total: 1.63 kcal Atomic # 6 Polarization: -22.38 SS G_CDS: -0.68 Total: -23.07 kcal Atomic # 7 Polarization: -38.83 SS G_CDS: 0.20 Total: -38.63 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -28.85 -9.22 -38.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000226670107.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.653 kcal (2) G-P(sol) polarization free energy of solvation -28.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds