Wall clock time and date at job start Mon Mar 30 2020 06:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46977 * 2 1 4 4 H 1.09006 * 109.47043 * 54.91253 * 3 2 1 5 5 C 1.50696 * 109.47258 * 174.91614 * 3 2 1 6 6 H 1.08000 * 119.99907 * 119.99642 * 5 3 2 7 7 C 1.37878 * 119.99881 * 299.99951 * 5 3 2 8 8 N 1.31519 * 119.99809 * 179.97438 * 7 5 3 9 9 Si 1.86793 * 120.00293 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.47488 * 89.99800 * 9 7 5 11 11 H 1.48496 * 109.47350 * 210.00097 * 9 7 5 12 12 H 1.48502 * 109.47256 * 329.99827 * 9 7 5 13 13 N 1.46903 * 109.47043 * 294.91955 * 3 2 1 14 14 C 1.47272 * 111.00071 * 156.22407 * 13 3 2 15 15 H 1.08669 * 108.81787 * 33.83945 * 14 13 3 16 16 C 1.52766 * 109.09583 * 273.38313 * 14 13 3 17 17 C 1.52206 * 110.73717 * 180.02562 * 16 14 13 18 18 H 1.11145 * 106.97124 * 169.76930 * 17 16 14 19 19 C 1.52835 * 110.62036 * 285.50351 * 17 16 14 20 20 C 1.51524 * 113.14069 * 51.72090 * 17 16 14 21 21 C 1.51856 * 115.71921 * 316.59285 * 20 17 16 22 22 C 1.53100 * 111.04380 * 279.91723 * 21 20 17 23 23 C 1.54412 * 107.99653 * 162.38260 * 21 20 17 24 24 C 1.52473 * 112.43596 * 43.69159 * 21 20 17 25 25 H 1.09000 * 109.47789 * 295.41369 * 1 2 3 26 26 H 1.08995 * 109.47422 * 55.41900 * 1 2 3 27 27 H 1.09007 * 109.46776 * 175.41832 * 1 2 3 28 28 H 1.08993 * 109.47465 * 239.99540 * 2 1 3 29 29 H 1.09005 * 109.47090 * 119.99295 * 2 1 3 30 30 H 0.96994 * 119.99732 * 180.02562 * 8 7 5 31 31 H 1.00904 * 110.99186 * 280.17520 * 13 3 2 32 32 H 1.09314 * 109.20977 * 300.80332 * 16 14 13 33 33 H 1.09329 * 109.18454 * 59.31129 * 16 14 13 34 34 H 1.08998 * 109.47379 * 59.99901 * 19 17 16 35 35 H 1.08997 * 109.47234 * 180.02562 * 19 17 16 36 36 H 1.09004 * 109.47228 * 300.00082 * 19 17 16 37 37 H 1.10211 * 108.78856 * 194.09058 * 20 17 16 38 38 H 1.10243 * 108.75066 * 79.01973 * 20 17 16 39 39 H 1.09005 * 109.47165 * 302.11416 * 22 21 20 40 40 H 1.09005 * 109.47096 * 182.11594 * 22 21 20 41 41 H 1.09002 * 109.47503 * 62.11495 * 22 21 20 42 42 H 1.09003 * 109.47145 * 179.84075 * 23 21 20 43 43 H 1.08994 * 109.47983 * 299.84459 * 23 21 20 44 44 H 1.09001 * 109.47072 * 59.84569 * 23 21 20 45 45 H 1.09298 * 109.44294 * 67.92632 * 24 21 20 46 46 H 1.09306 * 109.41619 * 186.79330 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6041 1.9820 0.8410 5 6 3.5416 1.4444 0.1259 6 1 4.1480 1.8886 -0.6497 7 6 4.1415 0.8791 1.2312 8 7 5.4521 0.8804 1.3408 9 14 3.0929 0.1102 2.5722 10 1 2.8725 -1.3261 2.2659 11 1 3.7883 0.2368 3.8781 12 1 1.7840 0.8085 2.6387 13 7 1.6529 2.0987 -1.2561 14 6 1.6019 3.5615 -1.0935 15 1 2.3709 3.8627 -0.3871 16 6 0.2204 3.9590 -0.5766 17 6 0.1263 5.4673 -0.3953 18 1 -0.9423 5.7049 -0.2030 19 6 0.9023 5.9098 0.8449 20 6 0.5481 6.2426 -1.6269 21 6 1.8025 5.7435 -2.3223 22 6 3.0619 6.2339 -1.6030 23 6 1.8247 6.3349 -3.7485 24 6 1.8319 4.2244 -2.4497 25 1 -0.3635 0.4410 0.9282 26 1 -0.3634 0.5832 -0.8460 27 1 -0.3633 -1.0245 -0.0821 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 5.8741 0.4823 2.1181 31 1 2.2762 1.8397 -2.0062 32 1 -0.5393 3.6273 -1.2891 33 1 0.0386 3.4632 0.3807 34 1 1.9507 5.6321 0.7358 35 1 0.8222 6.9910 0.9570 36 1 0.4871 5.4217 1.7266 37 1 0.6979 7.2982 -1.3479 38 1 -0.2818 6.2341 -2.3525 39 1 3.0574 7.3233 -1.5644 40 1 3.9450 5.8932 -2.1436 41 1 3.0800 5.8346 -0.5889 42 1 2.7192 5.9933 -4.2696 43 1 0.9394 6.0056 -4.2923 44 1 1.8315 7.4233 -3.6904 45 1 1.0528 3.9025 -3.1454 46 1 2.8021 3.9116 -2.8441 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227022756.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:38 Heat of formation + Delta-G solvation = -36.398763 kcal Electronic energy + Delta-G solvation = -20688.738465 eV Core-core repulsion = 17997.660224 eV Total energy + Delta-G solvation = -2691.078240 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.44471 -36.17857 -33.80371 -32.63931 -31.77563 -28.76135 -27.35729 -26.43218 -26.18496 -25.84685 -22.52955 -21.22054 -20.31314 -19.33963 -17.51954 -16.89994 -15.48724 -14.99822 -14.43953 -14.29588 -14.09268 -13.80406 -13.54751 -13.03492 -12.86954 -12.72997 -12.42700 -12.23407 -11.99798 -11.77010 -11.67615 -11.45266 -11.38645 -11.18426 -10.89082 -10.71519 -10.70235 -10.61274 -10.39860 -10.27119 -10.02143 -9.75605 -9.63569 -9.50735 -9.36122 -9.10815 -8.54513 -7.25674 -6.10340 -4.10379 3.27283 3.37798 3.40389 4.39240 4.77116 4.82900 4.93789 5.21759 5.27394 5.34781 5.40195 5.47909 5.66375 5.75134 5.81265 5.84387 5.91717 5.93307 6.02174 6.02304 6.07034 6.09610 6.11097 6.20404 6.27045 6.28846 6.34100 6.37296 6.43975 6.45861 6.60709 6.68830 6.72741 6.73386 6.79525 6.85376 6.96227 7.06972 7.18613 7.33695 7.62731 8.13899 8.45925 8.55685 8.93313 9.54071 11.02681 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.022674 B = 0.006977 C = 0.006584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.573632 B = 4011.946560 C = 4251.956140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.116 4.116 3 C 0.184 3.816 4 H 0.032 0.968 5 C -0.542 4.542 6 H 0.072 0.928 7 C 0.072 3.928 8 N -0.899 5.899 9 Si 0.888 3.112 10 H -0.278 1.278 11 H -0.299 1.299 12 H -0.265 1.265 13 N -0.681 5.681 14 C 0.093 3.907 15 H 0.057 0.943 16 C -0.097 4.097 17 C -0.083 4.083 18 H 0.053 0.947 19 C -0.150 4.150 20 C -0.093 4.093 21 C -0.054 4.054 22 C -0.144 4.144 23 C -0.144 4.144 24 C -0.104 4.104 25 H 0.037 0.963 26 H 0.064 0.936 27 H 0.031 0.969 28 H 0.056 0.944 29 H 0.043 0.957 30 H 0.263 0.737 31 H 0.332 0.668 32 H 0.058 0.942 33 H 0.058 0.942 34 H 0.063 0.937 35 H 0.047 0.953 36 H 0.051 0.949 37 H 0.053 0.947 38 H 0.052 0.948 39 H 0.047 0.953 40 H 0.052 0.948 41 H 0.064 0.936 42 H 0.053 0.947 43 H 0.051 0.949 44 H 0.049 0.951 45 H 0.061 0.939 46 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.787 9.453 -5.572 14.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.154 4.154 3 C 0.075 3.925 4 H 0.050 0.950 5 C -0.581 4.581 6 H 0.090 0.910 7 C -0.130 4.130 8 N -0.537 5.537 9 Si 0.719 3.281 10 H -0.206 1.206 11 H -0.227 1.227 12 H -0.190 1.190 13 N -0.310 5.310 14 C -0.017 4.017 15 H 0.075 0.925 16 C -0.135 4.135 17 C -0.102 4.102 18 H 0.071 0.929 19 C -0.207 4.207 20 C -0.130 4.130 21 C -0.054 4.054 22 C -0.202 4.202 23 C -0.201 4.201 24 C -0.142 4.142 25 H 0.056 0.944 26 H 0.083 0.917 27 H 0.050 0.950 28 H 0.075 0.925 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.149 0.851 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.066 0.934 36 H 0.070 0.930 37 H 0.072 0.928 38 H 0.071 0.929 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.083 0.917 42 H 0.072 0.928 43 H 0.070 0.930 44 H 0.068 0.932 45 H 0.080 0.920 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -10.331 9.321 -5.364 14.913 hybrid contribution 0.638 -0.344 0.876 1.138 sum -9.693 8.977 -4.488 13.952 Atomic orbital electron populations 1.21739 0.97639 0.99397 1.01295 1.21815 0.93804 0.99562 1.00219 1.19570 0.94008 0.90429 0.88504 0.95030 1.21768 0.90677 1.38725 1.06929 0.91042 1.25004 0.94725 0.95375 0.97927 1.69922 1.08878 1.45239 1.29686 0.86835 0.80664 0.79872 0.80741 1.20551 1.22710 1.18959 1.60898 1.56088 1.05654 1.08334 1.21213 0.96101 0.88792 0.95549 0.92530 1.21370 0.97829 0.93063 1.01217 1.20779 0.98991 0.95840 0.94552 0.92876 1.21948 1.01605 0.99958 0.97189 1.21231 0.96644 0.98683 0.96456 1.20326 0.95034 0.95391 0.94695 1.22033 0.96727 0.99916 1.01476 1.22276 1.01430 1.00099 0.96296 1.21622 1.01488 0.93280 0.97842 0.94431 0.91674 0.94958 0.92543 0.93918 0.92741 0.85066 0.92304 0.92376 0.91775 0.93429 0.92999 0.92843 0.92947 0.93395 0.92844 0.91678 0.92832 0.93037 0.93227 0.92046 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.67 9.85 37.16 0.37 -2.30 16 2 C -0.12 -2.55 5.11 -26.73 -0.14 -2.68 16 3 C 0.18 4.25 1.38 -68.86 -0.09 4.16 16 4 H 0.03 0.78 6.25 -51.93 -0.32 0.45 16 5 C -0.54 -14.84 8.78 -34.44 -0.30 -15.14 16 6 H 0.07 2.12 8.00 -52.49 -0.42 1.70 16 7 C 0.07 2.06 5.45 -17.82 -0.10 1.97 16 8 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 9 Si 0.89 22.18 24.41 -169.99 -4.15 18.03 16 10 H -0.28 -6.82 6.83 56.52 0.39 -6.44 16 11 H -0.30 -7.51 7.11 56.52 0.40 -7.11 16 12 H -0.26 -6.37 6.53 56.52 0.37 -6.00 16 13 N -0.68 -13.43 5.42 -101.11 -0.55 -13.97 16 14 C 0.09 1.65 2.12 -67.79 -0.14 1.50 16 15 H 0.06 1.17 5.63 -52.11 -0.29 0.88 16 16 C -0.10 -1.53 4.82 -27.26 -0.13 -1.67 16 17 C -0.08 -1.11 2.60 -91.86 -0.24 -1.35 16 18 H 0.05 0.66 8.29 -50.69 -0.42 0.24 16 19 C -0.15 -2.05 8.89 37.07 0.33 -1.72 16 20 C -0.09 -1.14 4.13 -28.06 -0.12 -1.25 16 21 C -0.05 -0.70 0.71 -154.57 -0.11 -0.81 16 22 C -0.14 -1.96 8.01 37.21 0.30 -1.66 16 23 C -0.14 -1.61 8.09 37.90 0.31 -1.30 16 24 C -0.10 -1.57 3.77 -27.16 -0.10 -1.67 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.06 1.17 7.63 -51.93 -0.40 0.77 16 27 H 0.03 0.53 8.14 -51.92 -0.42 0.11 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.04 1.00 3.21 -51.93 -0.17 0.84 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.33 6.66 8.03 -39.29 -0.32 6.35 16 32 H 0.06 0.91 8.17 -51.75 -0.42 0.49 16 33 H 0.06 1.02 7.45 -51.74 -0.39 0.63 16 34 H 0.06 0.98 4.91 -51.93 -0.25 0.72 16 35 H 0.05 0.56 8.05 -51.93 -0.42 0.15 16 36 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 37 H 0.05 0.61 7.91 -51.24 -0.41 0.20 16 38 H 0.05 0.60 7.92 -51.22 -0.41 0.20 16 39 H 0.05 0.57 8.13 -51.93 -0.42 0.15 16 40 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.06 0.99 4.72 -51.93 -0.25 0.74 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 43 H 0.05 0.55 8.05 -51.93 -0.42 0.13 16 44 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 45 H 0.06 0.89 8.11 -51.76 -0.42 0.47 16 46 H 0.06 0.92 8.07 -51.76 -0.42 0.50 16 LS Contribution 331.81 15.07 5.00 5.00 Total: -1.00 -28.34 331.81 -7.79 -36.13 By element: Atomic # 1 Polarization: 14.04 SS G_CDS: -8.70 Total: 5.34 kcal Atomic # 6 Polarization: -23.76 SS G_CDS: -0.17 Total: -23.93 kcal Atomic # 7 Polarization: -40.80 SS G_CDS: 0.23 Total: -40.57 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -4.15 Total: 18.03 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -28.34 -7.79 -36.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227022756.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.267 kcal (2) G-P(sol) polarization free energy of solvation -28.342 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.790 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.132 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.399 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds