Wall clock time and date at job start Mon Mar 30 2020 06:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.46977 * 2 1 4 4 H 1.09006 * 109.47043 * 54.91253 * 3 2 1 5 5 C 1.50696 * 109.47258 * 174.91614 * 3 2 1 6 6 H 1.08000 * 119.99907 * 119.99642 * 5 3 2 7 7 C 1.37878 * 119.99881 * 299.99951 * 5 3 2 8 8 N 1.31519 * 119.99809 * 179.97438 * 7 5 3 9 9 Si 1.86793 * 120.00293 * 0.02562 * 7 5 3 10 10 H 1.48502 * 109.47488 * 89.99800 * 9 7 5 11 11 H 1.48496 * 109.47350 * 210.00097 * 9 7 5 12 12 H 1.48502 * 109.47256 * 329.99827 * 9 7 5 13 13 N 1.46903 * 109.47043 * 294.91955 * 3 2 1 14 14 C 1.47272 * 111.00071 * 156.22407 * 13 3 2 15 15 H 1.08669 * 108.81787 * 33.83945 * 14 13 3 16 16 C 1.52766 * 109.09583 * 273.38313 * 14 13 3 17 17 C 1.52206 * 110.73717 * 180.02562 * 16 14 13 18 18 H 1.11145 * 106.97124 * 169.76930 * 17 16 14 19 19 C 1.52835 * 110.62036 * 285.50351 * 17 16 14 20 20 C 1.51524 * 113.14069 * 51.72090 * 17 16 14 21 21 C 1.51856 * 115.71921 * 316.59285 * 20 17 16 22 22 C 1.53100 * 111.04380 * 279.91723 * 21 20 17 23 23 C 1.54412 * 107.99653 * 162.38260 * 21 20 17 24 24 C 1.52473 * 112.43596 * 43.69159 * 21 20 17 25 25 H 1.09000 * 109.47789 * 295.41369 * 1 2 3 26 26 H 1.08995 * 109.47422 * 55.41900 * 1 2 3 27 27 H 1.09007 * 109.46776 * 175.41832 * 1 2 3 28 28 H 1.08993 * 109.47465 * 239.99540 * 2 1 3 29 29 H 1.09005 * 109.47090 * 119.99295 * 2 1 3 30 30 H 0.96994 * 119.99732 * 180.02562 * 8 7 5 31 31 H 1.00904 * 110.99186 * 280.17520 * 13 3 2 32 32 H 1.09314 * 109.20977 * 300.80332 * 16 14 13 33 33 H 1.09329 * 109.18454 * 59.31129 * 16 14 13 34 34 H 1.08998 * 109.47379 * 59.99901 * 19 17 16 35 35 H 1.08997 * 109.47234 * 180.02562 * 19 17 16 36 36 H 1.09004 * 109.47228 * 300.00082 * 19 17 16 37 37 H 1.10211 * 108.78856 * 194.09058 * 20 17 16 38 38 H 1.10243 * 108.75066 * 79.01973 * 20 17 16 39 39 H 1.09005 * 109.47165 * 302.11416 * 22 21 20 40 40 H 1.09005 * 109.47096 * 182.11594 * 22 21 20 41 41 H 1.09002 * 109.47503 * 62.11495 * 22 21 20 42 42 H 1.09003 * 109.47145 * 179.84075 * 23 21 20 43 43 H 1.08994 * 109.47983 * 299.84459 * 23 21 20 44 44 H 1.09001 * 109.47072 * 59.84569 * 23 21 20 45 45 H 1.09298 * 109.44294 * 67.92632 * 24 21 20 46 46 H 1.09306 * 109.41619 * 186.79330 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6041 1.9820 0.8410 5 6 3.5416 1.4444 0.1259 6 1 4.1480 1.8886 -0.6497 7 6 4.1415 0.8791 1.2312 8 7 5.4521 0.8804 1.3408 9 14 3.0929 0.1102 2.5722 10 1 2.8725 -1.3261 2.2659 11 1 3.7883 0.2368 3.8781 12 1 1.7840 0.8085 2.6387 13 7 1.6529 2.0987 -1.2561 14 6 1.6019 3.5615 -1.0935 15 1 2.3709 3.8627 -0.3871 16 6 0.2204 3.9590 -0.5766 17 6 0.1263 5.4673 -0.3953 18 1 -0.9423 5.7049 -0.2030 19 6 0.9023 5.9098 0.8449 20 6 0.5481 6.2426 -1.6269 21 6 1.8025 5.7435 -2.3223 22 6 3.0619 6.2339 -1.6030 23 6 1.8247 6.3349 -3.7485 24 6 1.8319 4.2244 -2.4497 25 1 -0.3635 0.4410 0.9282 26 1 -0.3634 0.5832 -0.8460 27 1 -0.3633 -1.0245 -0.0821 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5137 0.8901 30 1 5.8741 0.4823 2.1181 31 1 2.2762 1.8397 -2.0062 32 1 -0.5393 3.6273 -1.2891 33 1 0.0386 3.4632 0.3807 34 1 1.9507 5.6321 0.7358 35 1 0.8222 6.9910 0.9570 36 1 0.4871 5.4217 1.7266 37 1 0.6979 7.2982 -1.3479 38 1 -0.2818 6.2341 -2.3525 39 1 3.0574 7.3233 -1.5644 40 1 3.9450 5.8932 -2.1436 41 1 3.0800 5.8346 -0.5889 42 1 2.7192 5.9933 -4.2696 43 1 0.9394 6.0056 -4.2923 44 1 1.8315 7.4233 -3.6904 45 1 1.0528 3.9025 -3.1454 46 1 2.8021 3.9116 -2.8441 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227022756.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:37 Heat of formation + Delta-G solvation = -53.060378 kcal Electronic energy + Delta-G solvation = -20689.460966 eV Core-core repulsion = 17997.660224 eV Total energy + Delta-G solvation = -2691.800742 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.65984 -37.86024 -34.98830 -34.40703 -33.59292 -30.32056 -28.43754 -28.04037 -27.37122 -27.07558 -24.35460 -22.52974 -21.86872 -20.80260 -19.01915 -18.68600 -17.10127 -16.67104 -15.83611 -15.55188 -15.34219 -15.17067 -14.97663 -14.79394 -14.27500 -14.12287 -13.87449 -13.51348 -13.39191 -13.35370 -13.01851 -12.93319 -12.61686 -12.48581 -12.46712 -12.19489 -12.04055 -11.87838 -11.77745 -11.58159 -11.52139 -11.35537 -11.25357 -11.08021 -10.84725 -10.64219 -10.63029 -9.00028 -8.34338 -6.38047 1.26549 1.31447 1.42047 2.27712 3.01402 3.45607 3.76577 3.82826 4.04942 4.24057 4.28647 4.33519 4.40701 4.45363 4.47960 4.55743 4.65328 4.70769 4.75363 4.84068 4.91542 4.92687 4.96631 5.00396 5.01977 5.09632 5.12761 5.14366 5.19258 5.24434 5.24786 5.30496 5.34620 5.44399 5.48401 5.51493 5.55796 5.60036 5.63790 5.68747 5.72076 6.12991 6.46801 6.67802 6.84687 7.30845 8.82055 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.022674 B = 0.006977 C = 0.006584 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1234.573632 B = 4011.946560 C = 4251.956140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.118 4.118 3 C 0.194 3.806 4 H 0.020 0.980 5 C -0.540 4.540 6 H 0.031 0.969 7 C 0.015 3.985 8 N -0.947 5.947 9 Si 0.948 3.052 10 H -0.266 1.266 11 H -0.300 1.300 12 H -0.250 1.250 13 N -0.669 5.669 14 C 0.094 3.906 15 H 0.018 0.982 16 C -0.090 4.090 17 C -0.081 4.081 18 H 0.075 0.925 19 C -0.150 4.150 20 C -0.092 4.092 21 C -0.053 4.053 22 C -0.144 4.144 23 C -0.138 4.138 24 C -0.098 4.098 25 H 0.039 0.961 26 H 0.071 0.929 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.030 0.970 30 H 0.264 0.736 31 H 0.328 0.672 32 H 0.068 0.932 33 H 0.038 0.962 34 H 0.038 0.962 35 H 0.069 0.931 36 H 0.044 0.956 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.040 0.960 41 H 0.041 0.959 42 H 0.047 0.953 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.073 0.927 46 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.787 10.319 -6.121 17.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.156 4.156 3 C 0.084 3.916 4 H 0.038 0.962 5 C -0.579 4.579 6 H 0.049 0.951 7 C -0.183 4.183 8 N -0.587 5.587 9 Si 0.775 3.225 10 H -0.192 1.192 11 H -0.228 1.228 12 H -0.174 1.174 13 N -0.297 5.297 14 C -0.016 4.016 15 H 0.036 0.964 16 C -0.128 4.128 17 C -0.100 4.100 18 H 0.093 0.907 19 C -0.207 4.207 20 C -0.129 4.129 21 C -0.054 4.054 22 C -0.201 4.201 23 C -0.195 4.195 24 C -0.136 4.136 25 H 0.058 0.942 26 H 0.090 0.910 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.145 0.855 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.088 0.912 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.059 0.941 41 H 0.060 0.940 42 H 0.066 0.934 43 H 0.081 0.919 44 H 0.084 0.916 45 H 0.092 0.908 46 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -13.354 10.196 -5.930 17.817 hybrid contribution 1.657 -0.562 0.985 2.008 sum -11.697 9.634 -4.945 15.940 Atomic orbital electron populations 1.21640 0.94509 1.01205 1.01731 1.21760 0.96577 0.97790 0.99478 1.19377 0.90797 0.91826 0.89612 0.96172 1.22081 0.92992 1.37224 1.05567 0.95058 1.25829 0.95754 0.96202 1.00465 1.70066 1.10822 1.47090 1.30763 0.85860 0.79462 0.79647 0.77514 1.19203 1.22841 1.17373 1.60971 1.55048 1.07062 1.06636 1.21263 0.96443 0.87477 0.96439 0.96391 1.21311 0.96287 0.95021 1.00155 1.20787 1.00249 0.93978 0.95026 0.90673 1.21948 1.00062 1.01325 0.97338 1.21215 0.96469 0.99165 0.96083 1.20328 0.95197 0.93609 0.96260 1.22029 0.96918 1.01127 1.00012 1.22215 1.01756 1.00979 0.94593 1.21570 1.00848 0.95031 0.96105 0.94210 0.90983 0.92512 0.92769 0.95220 0.92690 0.85543 0.91293 0.94360 0.94250 0.91250 0.93640 0.91167 0.91112 0.91312 0.94088 0.94035 0.93355 0.91925 0.91616 0.90831 0.94151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.60 9.85 71.98 0.71 -3.89 16 2 C -0.12 -5.05 5.11 30.59 0.16 -4.90 16 3 C 0.19 9.06 1.38 44.17 0.06 9.12 16 4 H 0.02 1.00 6.25 -2.38 -0.01 0.99 16 5 C -0.54 -30.79 8.78 25.60 0.22 -30.56 16 6 H 0.03 1.98 8.00 -2.91 -0.02 1.96 16 7 C 0.02 0.90 5.45 84.65 0.46 1.37 16 8 N -0.95 -59.94 13.96 21.45 0.30 -59.64 16 9 Si 0.95 46.22 24.41 68.60 1.67 47.89 16 10 H -0.27 -12.37 6.83 99.48 0.68 -11.69 16 11 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 12 H -0.25 -11.45 6.53 99.48 0.65 -10.81 16 13 N -0.67 -26.65 5.42 -473.80 -2.57 -29.21 16 14 C 0.09 3.34 2.12 44.67 0.09 3.44 16 15 H 0.02 0.79 5.63 -2.56 -0.01 0.77 16 16 C -0.09 -2.73 4.82 30.25 0.15 -2.59 16 17 C -0.08 -2.01 2.60 -11.59 -0.03 -2.04 16 18 H 0.07 1.58 8.29 -1.23 -0.01 1.57 16 19 C -0.15 -3.95 8.89 71.93 0.64 -3.31 16 20 C -0.09 -1.96 4.13 29.73 0.12 -1.84 16 21 C -0.05 -1.30 0.71 -52.22 -0.04 -1.33 16 22 C -0.14 -3.89 8.01 72.02 0.58 -3.31 16 23 C -0.14 -2.71 8.09 72.46 0.59 -2.12 16 24 C -0.10 -2.90 3.77 30.32 0.11 -2.78 16 25 H 0.04 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.07 2.38 7.63 -2.39 -0.02 2.36 16 27 H 0.06 1.69 8.14 -2.38 -0.02 1.67 16 28 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.03 1.35 3.21 -2.38 -0.01 1.34 16 30 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 31 H 0.33 13.52 8.03 -89.69 -0.72 12.80 16 32 H 0.07 1.97 8.17 -2.22 -0.02 1.95 16 33 H 0.04 1.30 7.45 -2.21 -0.02 1.29 16 34 H 0.04 1.23 4.91 -2.39 -0.01 1.22 16 35 H 0.07 1.50 8.05 -2.39 -0.02 1.48 16 36 H 0.04 1.22 8.14 -2.38 -0.02 1.21 16 37 H 0.07 1.32 7.91 -1.74 -0.01 1.30 16 38 H 0.07 1.30 7.92 -1.72 -0.01 1.29 16 39 H 0.07 1.54 8.13 -2.38 -0.02 1.52 16 40 H 0.04 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.04 1.31 4.72 -2.39 -0.01 1.30 16 42 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 43 H 0.06 1.11 8.05 -2.39 -0.02 1.09 16 44 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.07 2.01 8.11 -2.23 -0.02 1.99 16 46 H 0.04 1.32 8.07 -2.22 -0.02 1.30 16 Total: -1.00 -63.33 331.81 3.38 -59.96 By element: Atomic # 1 Polarization: 25.62 SS G_CDS: 0.14 Total: 25.76 kcal Atomic # 6 Polarization: -48.58 SS G_CDS: 3.83 Total: -44.76 kcal Atomic # 7 Polarization: -86.59 SS G_CDS: -2.27 Total: -88.85 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 1.67 Total: 47.89 kcal Total: -63.33 3.38 -59.96 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227022756.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.897 kcal (2) G-P(sol) polarization free energy of solvation -63.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.376 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.060 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds