Wall clock time and date at job start Mon Mar 30 2020 06:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47228 * 2 1 4 4 H 1.09002 * 109.47185 * 179.61532 * 3 2 1 5 5 C 1.50702 * 109.47179 * 299.60685 * 3 2 1 6 6 H 1.08002 * 119.99819 * 119.99746 * 5 3 2 7 7 C 1.37874 * 120.00202 * 300.00414 * 5 3 2 8 8 N 1.31519 * 120.00237 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 120.00082 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47060 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47078 * 119.99935 * 9 7 5 12 12 H 1.48497 * 109.46872 * 239.99614 * 9 7 5 13 13 N 1.46897 * 109.47094 * 59.60899 * 3 2 1 14 14 C 1.46902 * 110.99998 * 85.75661 * 13 3 2 15 15 H 1.08994 * 109.46615 * 326.92271 * 14 13 3 16 16 C 1.53000 * 109.47241 * 86.92181 * 14 13 3 17 17 C 1.53002 * 109.47206 * 179.97438 * 16 14 13 18 18 H 1.09004 * 109.46456 * 60.00174 * 17 16 14 19 19 C 1.53000 * 109.47206 * 180.02562 * 17 16 14 20 20 C 1.52998 * 109.47146 * 300.00201 * 17 16 14 21 21 C 1.53000 * 109.47232 * 59.99815 * 20 17 16 22 22 C 1.53004 * 109.47112 * 59.99804 * 21 20 17 23 23 C 1.52998 * 109.47232 * 180.02562 * 21 20 17 24 24 C 1.52998 * 109.46973 * 206.92298 * 14 13 3 25 25 H 1.08989 * 109.47265 * 176.31789 * 1 2 3 26 26 H 1.08997 * 109.47215 * 296.32352 * 1 2 3 27 27 H 1.09010 * 109.46608 * 56.32044 * 1 2 3 28 28 H 1.09001 * 109.47414 * 240.00015 * 2 1 3 29 29 H 1.08995 * 109.47345 * 119.99651 * 2 1 3 30 30 H 0.96996 * 119.99995 * 180.02562 * 8 7 5 31 31 H 1.00908 * 110.99902 * 209.71076 * 13 3 2 32 32 H 1.09004 * 109.47158 * 59.99939 * 16 14 13 33 33 H 1.08999 * 109.47340 * 300.00183 * 16 14 13 34 34 H 1.09000 * 109.46993 * 180.02562 * 19 17 16 35 35 H 1.08999 * 109.47340 * 300.00373 * 19 17 16 36 36 H 1.09004 * 109.46645 * 60.00250 * 19 17 16 37 37 H 1.09000 * 109.47050 * 179.97438 * 20 17 16 38 38 H 1.08994 * 109.47395 * 300.00199 * 20 17 16 39 39 H 1.09000 * 109.47113 * 60.00169 * 22 21 20 40 40 H 1.09000 * 109.46942 * 179.97438 * 22 21 20 41 41 H 1.08999 * 109.46994 * 300.00182 * 22 21 20 42 42 H 1.08994 * 109.47395 * 60.00384 * 23 21 20 43 43 H 1.09003 * 109.47086 * 180.02562 * 23 21 20 44 44 H 1.09000 * 109.47050 * 299.99866 * 23 21 20 45 45 H 1.09000 * 109.47336 * 59.99733 * 24 14 13 46 46 H 1.09004 * 109.47034 * 299.99821 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0069 5 6 1.5457 2.1501 -1.2353 6 1 0.9241 3.0284 -1.1422 7 6 1.8867 1.6762 -2.4843 8 7 2.6439 0.6069 -2.5978 9 14 1.2734 2.5530 -4.0156 10 1 0.4450 3.7200 -3.6194 11 1 2.4332 3.0181 -4.8177 12 1 0.4538 1.6173 -4.8268 13 7 1.5427 2.1377 1.1947 14 6 2.4287 1.9091 2.3439 15 1 2.8609 0.9108 2.2763 16 6 3.5488 2.9513 2.3396 17 6 4.4713 2.7135 3.5369 18 1 4.9036 1.7151 3.4697 19 6 5.5911 3.7561 3.5329 20 6 3.6667 2.8349 4.8326 21 6 2.5465 1.7927 4.8369 22 6 3.1534 0.3913 4.7427 23 6 1.7416 1.9145 6.1323 24 6 1.6245 2.0301 3.6398 25 1 -0.3633 -1.0254 -0.0660 26 1 -0.3633 0.4557 0.9211 27 1 -0.3633 0.5700 -0.8553 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 2.8842 0.2737 -3.4765 31 1 1.4278 3.1244 1.0173 32 1 3.1165 3.9496 2.4070 33 1 4.1218 2.8651 1.4163 34 1 6.2484 3.5864 4.3857 35 1 6.1643 3.6701 2.6099 36 1 5.1583 4.7543 3.6002 37 1 4.3238 2.6651 5.6855 38 1 3.2343 3.8332 4.8996 39 1 3.8106 0.2219 5.5957 40 1 2.3554 -0.3511 4.7462 41 1 3.7266 0.3049 3.8196 42 1 1.3092 2.9128 6.1989 43 1 0.9438 1.1717 6.1355 44 1 2.3985 1.7454 6.9855 45 1 0.8264 1.2876 3.6429 46 1 1.1922 3.0284 3.7073 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000227022769.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:42 Heat of formation + Delta-G solvation = -42.847181 kcal Electronic energy + Delta-G solvation = -20444.766502 eV Core-core repulsion = 17753.408637 eV Total energy + Delta-G solvation = -2691.357865 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.60824 -35.99659 -33.83507 -32.79113 -30.92977 -28.47960 -27.20014 -26.48504 -25.91979 -25.56074 -23.12054 -20.89597 -20.26739 -18.80934 -18.21199 -16.33767 -15.08007 -14.86349 -14.73866 -14.20545 -14.09608 -13.72113 -13.25179 -13.04644 -12.83760 -12.42831 -12.35040 -12.01035 -11.79922 -11.76151 -11.59616 -11.54646 -11.19661 -10.95924 -10.94597 -10.80738 -10.63692 -10.48425 -10.33487 -10.24073 -9.93186 -9.81333 -9.69895 -9.43179 -9.28180 -8.71121 -8.43150 -7.09308 -5.98622 -4.03537 3.29725 3.38123 3.41847 4.42601 4.81129 4.82938 4.96458 5.20244 5.32178 5.35384 5.45087 5.50395 5.67342 5.71013 5.76439 5.86840 5.88823 5.90483 5.94887 6.01907 6.06490 6.10343 6.20622 6.24249 6.29363 6.31983 6.48836 6.54551 6.56432 6.62414 6.68138 6.73749 6.82201 6.87853 6.95185 7.29218 7.42020 7.55846 7.79435 7.84512 7.91818 8.33278 8.48762 8.76612 9.07939 9.61309 11.07261 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.026543 B = 0.005889 C = 0.005310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.644474 B = 4753.811446 C = 5271.994630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.102 4.102 3 C 0.217 3.783 4 H 0.000 1.000 5 C -0.509 4.509 6 H 0.058 0.942 7 C 0.063 3.937 8 N -0.889 5.889 9 Si 0.891 3.109 10 H -0.274 1.274 11 H -0.286 1.286 12 H -0.284 1.284 13 N -0.682 5.682 14 C 0.089 3.911 15 H 0.071 0.929 16 C -0.139 4.139 17 C -0.091 4.091 18 H 0.069 0.931 19 C -0.146 4.146 20 C -0.098 4.098 21 C -0.066 4.066 22 C -0.143 4.143 23 C -0.138 4.138 24 C -0.091 4.091 25 H 0.011 0.989 26 H 0.042 0.958 27 H 0.054 0.946 28 H 0.085 0.915 29 H 0.008 0.992 30 H 0.259 0.741 31 H 0.328 0.672 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.048 0.952 35 H 0.053 0.947 36 H 0.051 0.949 37 H 0.054 0.946 38 H 0.058 0.942 39 H 0.046 0.954 40 H 0.052 0.948 41 H 0.062 0.938 42 H 0.051 0.949 43 H 0.053 0.947 44 H 0.049 0.951 45 H 0.063 0.937 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.179 2.640 14.149 14.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.141 4.141 3 C 0.110 3.890 4 H 0.018 0.982 5 C -0.548 4.548 6 H 0.076 0.924 7 C -0.139 4.139 8 N -0.528 5.528 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.212 1.212 12 H -0.211 1.211 13 N -0.311 5.311 14 C -0.022 4.022 15 H 0.089 0.911 16 C -0.178 4.178 17 C -0.110 4.110 18 H 0.088 0.912 19 C -0.203 4.203 20 C -0.136 4.136 21 C -0.066 4.066 22 C -0.200 4.200 23 C -0.196 4.196 24 C -0.129 4.129 25 H 0.031 0.969 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.103 0.897 29 H 0.027 0.973 30 H 0.069 0.931 31 H 0.146 0.854 32 H 0.075 0.925 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.072 0.928 36 H 0.070 0.930 37 H 0.073 0.927 38 H 0.077 0.923 39 H 0.065 0.935 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.068 0.932 45 H 0.082 0.918 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 1.806 2.010 14.152 14.407 hybrid contribution 0.524 0.970 -1.190 1.622 sum 2.330 2.980 12.962 13.503 Atomic orbital electron populations 1.21440 0.97627 0.97237 1.01317 1.21435 0.94938 0.98449 0.99258 1.19101 0.92849 0.91299 0.85801 0.98249 1.21250 1.31295 1.11814 0.90449 0.92393 1.24882 0.95116 0.95011 0.98869 1.69898 1.36782 1.22789 1.23368 0.86560 0.78543 0.79718 0.83305 1.19816 1.21215 1.21050 1.60762 1.48740 1.15573 1.06021 1.21551 0.91034 0.97979 0.91655 0.91100 1.22333 0.97968 0.99941 0.97573 1.21146 0.95439 0.99258 0.95178 0.91216 1.21827 0.98237 0.99037 1.01194 1.21614 0.96479 0.98581 0.96897 1.20543 0.95416 0.95335 0.95313 1.21957 1.00570 0.95922 1.01585 1.21842 0.99640 1.01447 0.96635 1.21536 0.97320 1.01396 0.92698 0.96940 0.93909 0.92645 0.89683 0.97310 0.93107 0.85422 0.92541 0.91919 0.93288 0.92820 0.93029 0.92727 0.92345 0.93457 0.92853 0.91887 0.92966 0.92784 0.93228 0.91835 0.92694 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.70 9.52 37.16 0.35 -2.35 16 2 C -0.10 -2.50 5.57 -26.73 -0.15 -2.65 16 3 C 0.22 5.34 2.11 -68.86 -0.15 5.19 16 4 H 0.00 0.00 7.26 -51.93 -0.38 -0.38 16 5 C -0.51 -13.62 7.28 -34.44 -0.25 -13.87 16 6 H 0.06 1.55 7.61 -52.49 -0.40 1.15 16 7 C 0.06 1.71 5.30 -17.82 -0.09 1.62 16 8 N -0.89 -25.21 11.32 55.43 0.63 -24.58 16 9 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 10 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 N -0.68 -14.11 5.35 -100.96 -0.54 -14.65 16 14 C 0.09 1.55 1.99 -67.71 -0.14 1.41 16 15 H 0.07 1.36 5.46 -51.93 -0.28 1.07 16 16 C -0.14 -2.23 4.44 -26.73 -0.12 -2.35 16 17 C -0.09 -1.22 2.45 -90.62 -0.22 -1.44 16 18 H 0.07 0.97 6.43 -51.93 -0.33 0.64 16 19 C -0.15 -1.74 9.19 37.16 0.34 -1.40 16 20 C -0.10 -1.18 4.01 -26.73 -0.11 -1.29 16 21 C -0.07 -0.82 0.77 -154.53 -0.12 -0.94 16 22 C -0.14 -1.80 7.78 37.16 0.29 -1.51 16 23 C -0.14 -1.50 8.47 37.16 0.31 -1.19 16 24 C -0.09 -1.36 4.33 -26.76 -0.12 -1.48 16 25 H 0.01 0.24 8.14 -51.94 -0.42 -0.18 16 26 H 0.04 0.92 7.71 -51.93 -0.40 0.52 16 27 H 0.05 1.35 7.10 -51.92 -0.37 0.98 16 28 H 0.08 2.31 6.06 -51.93 -0.31 2.00 16 29 H 0.01 0.19 7.51 -51.93 -0.39 -0.20 16 30 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 31 H 0.33 6.80 7.91 -39.29 -0.31 6.49 16 32 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 33 H 0.06 1.16 7.58 -51.93 -0.39 0.76 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 35 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.06 0.87 4.81 -51.93 -0.25 0.62 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 46 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 LS Contribution 338.47 15.07 5.10 5.10 Total: -1.00 -26.85 338.47 -8.86 -35.71 By element: Atomic # 1 Polarization: 13.33 SS G_CDS: -8.87 Total: 4.46 kcal Atomic # 6 Polarization: -22.07 SS G_CDS: -0.16 Total: -22.23 kcal Atomic # 7 Polarization: -39.32 SS G_CDS: 0.09 Total: -39.23 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -26.85 -8.86 -35.71 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227022769.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.137 kcal (2) G-P(sol) polarization free energy of solvation -26.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.710 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds