Wall clock time and date at job start Mon Mar 30 2020 06:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47228 * 2 1 4 4 H 1.09002 * 109.47185 * 179.61532 * 3 2 1 5 5 C 1.50702 * 109.47179 * 299.60685 * 3 2 1 6 6 H 1.08002 * 119.99819 * 119.99746 * 5 3 2 7 7 C 1.37874 * 120.00202 * 300.00414 * 5 3 2 8 8 N 1.31519 * 120.00237 * 359.97438 * 7 5 3 9 9 Si 1.86807 * 120.00082 * 179.97438 * 7 5 3 10 10 H 1.48497 * 109.47060 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47078 * 119.99935 * 9 7 5 12 12 H 1.48497 * 109.46872 * 239.99614 * 9 7 5 13 13 N 1.46897 * 109.47094 * 59.60899 * 3 2 1 14 14 C 1.46902 * 110.99998 * 85.75661 * 13 3 2 15 15 H 1.08994 * 109.46615 * 326.92271 * 14 13 3 16 16 C 1.53000 * 109.47241 * 86.92181 * 14 13 3 17 17 C 1.53002 * 109.47206 * 179.97438 * 16 14 13 18 18 H 1.09004 * 109.46456 * 60.00174 * 17 16 14 19 19 C 1.53000 * 109.47206 * 180.02562 * 17 16 14 20 20 C 1.52998 * 109.47146 * 300.00201 * 17 16 14 21 21 C 1.53000 * 109.47232 * 59.99815 * 20 17 16 22 22 C 1.53004 * 109.47112 * 59.99804 * 21 20 17 23 23 C 1.52998 * 109.47232 * 180.02562 * 21 20 17 24 24 C 1.52998 * 109.46973 * 206.92298 * 14 13 3 25 25 H 1.08989 * 109.47265 * 176.31789 * 1 2 3 26 26 H 1.08997 * 109.47215 * 296.32352 * 1 2 3 27 27 H 1.09010 * 109.46608 * 56.32044 * 1 2 3 28 28 H 1.09001 * 109.47414 * 240.00015 * 2 1 3 29 29 H 1.08995 * 109.47345 * 119.99651 * 2 1 3 30 30 H 0.96996 * 119.99995 * 180.02562 * 8 7 5 31 31 H 1.00908 * 110.99902 * 209.71076 * 13 3 2 32 32 H 1.09004 * 109.47158 * 59.99939 * 16 14 13 33 33 H 1.08999 * 109.47340 * 300.00183 * 16 14 13 34 34 H 1.09000 * 109.46993 * 180.02562 * 19 17 16 35 35 H 1.08999 * 109.47340 * 300.00373 * 19 17 16 36 36 H 1.09004 * 109.46645 * 60.00250 * 19 17 16 37 37 H 1.09000 * 109.47050 * 179.97438 * 20 17 16 38 38 H 1.08994 * 109.47395 * 300.00199 * 20 17 16 39 39 H 1.09000 * 109.47113 * 60.00169 * 22 21 20 40 40 H 1.09000 * 109.46942 * 179.97438 * 22 21 20 41 41 H 1.08999 * 109.46994 * 300.00182 * 22 21 20 42 42 H 1.08994 * 109.47395 * 60.00384 * 23 21 20 43 43 H 1.09003 * 109.47086 * 180.02562 * 23 21 20 44 44 H 1.09000 * 109.47050 * 299.99866 * 23 21 20 45 45 H 1.09000 * 109.47336 * 59.99733 * 24 14 13 46 46 H 1.09004 * 109.47034 * 299.99821 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 0.0069 5 6 1.5457 2.1501 -1.2353 6 1 0.9241 3.0284 -1.1422 7 6 1.8867 1.6762 -2.4843 8 7 2.6439 0.6069 -2.5978 9 14 1.2734 2.5530 -4.0156 10 1 0.4450 3.7200 -3.6194 11 1 2.4332 3.0181 -4.8177 12 1 0.4538 1.6173 -4.8268 13 7 1.5427 2.1377 1.1947 14 6 2.4287 1.9091 2.3439 15 1 2.8609 0.9108 2.2763 16 6 3.5488 2.9513 2.3396 17 6 4.4713 2.7135 3.5369 18 1 4.9036 1.7151 3.4697 19 6 5.5911 3.7561 3.5329 20 6 3.6667 2.8349 4.8326 21 6 2.5465 1.7927 4.8369 22 6 3.1534 0.3913 4.7427 23 6 1.7416 1.9145 6.1323 24 6 1.6245 2.0301 3.6398 25 1 -0.3633 -1.0254 -0.0660 26 1 -0.3633 0.4557 0.9211 27 1 -0.3633 0.5700 -0.8553 28 1 1.8934 -0.5138 -0.8900 29 1 1.8933 -0.5137 0.8900 30 1 2.8842 0.2737 -3.4765 31 1 1.4278 3.1244 1.0173 32 1 3.1165 3.9496 2.4070 33 1 4.1218 2.8651 1.4163 34 1 6.2484 3.5864 4.3857 35 1 6.1643 3.6701 2.6099 36 1 5.1583 4.7543 3.6002 37 1 4.3238 2.6651 5.6855 38 1 3.2343 3.8332 4.8996 39 1 3.8106 0.2219 5.5957 40 1 2.3554 -0.3511 4.7462 41 1 3.7266 0.3049 3.8196 42 1 1.3092 2.9128 6.1989 43 1 0.9438 1.1717 6.1355 44 1 2.3985 1.7454 6.9855 45 1 0.8264 1.2876 3.6429 46 1 1.1922 3.0284 3.7073 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000227022769.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:41 Heat of formation + Delta-G solvation = -56.311991 kcal Electronic energy + Delta-G solvation = -20445.350380 eV Core-core repulsion = 17753.408637 eV Total energy + Delta-G solvation = -2691.941743 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.81586 -37.74961 -35.01452 -34.48371 -32.82671 -30.10621 -28.17983 -27.62566 -27.32300 -27.08565 -25.07899 -22.40877 -21.36708 -20.66443 -19.37045 -18.27862 -16.90268 -16.19369 -16.04533 -15.63149 -15.43899 -15.13564 -14.84091 -14.56359 -14.17986 -13.84854 -13.73075 -13.37455 -13.33193 -12.92705 -12.84429 -12.67925 -12.63339 -12.55042 -12.44662 -12.32695 -12.20539 -12.02560 -11.74032 -11.59147 -11.55381 -11.34448 -11.09869 -10.94733 -10.78882 -10.68352 -10.51479 -8.84961 -8.08882 -6.20752 1.39564 1.42256 1.52892 2.42543 3.19686 3.57170 3.74091 3.88016 4.09596 4.16858 4.22768 4.40811 4.45335 4.63083 4.65304 4.68618 4.76796 4.79652 4.80195 4.84112 4.92209 4.95696 4.97754 5.02485 5.05296 5.15764 5.20070 5.24218 5.27882 5.28221 5.33252 5.37903 5.43817 5.52535 5.54489 5.61081 5.64733 5.70225 5.73466 5.85252 5.94013 6.30218 6.57157 6.87851 7.09809 7.48359 8.96396 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.026543 B = 0.005889 C = 0.005310 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1054.644474 B = 4753.811446 C = 5271.994630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.098 4.098 3 C 0.227 3.773 4 H -0.039 1.039 5 C -0.520 4.520 6 H 0.056 0.944 7 C 0.016 3.984 8 N -0.918 5.918 9 Si 0.953 3.047 10 H -0.267 1.267 11 H -0.283 1.283 12 H -0.282 1.282 13 N -0.678 5.678 14 C 0.090 3.910 15 H 0.050 0.950 16 C -0.131 4.131 17 C -0.088 4.088 18 H 0.061 0.939 19 C -0.142 4.142 20 C -0.092 4.092 21 C -0.062 4.062 22 C -0.142 4.142 23 C -0.134 4.134 24 C -0.082 4.082 25 H 0.031 0.969 26 H 0.052 0.948 27 H 0.035 0.965 28 H 0.055 0.945 29 H 0.015 0.985 30 H 0.260 0.740 31 H 0.328 0.672 32 H 0.061 0.939 33 H 0.028 0.972 34 H 0.069 0.931 35 H 0.041 0.959 36 H 0.057 0.943 37 H 0.076 0.924 38 H 0.064 0.936 39 H 0.066 0.934 40 H 0.049 0.951 41 H 0.042 0.958 42 H 0.057 0.943 43 H 0.052 0.948 44 H 0.066 0.934 45 H 0.052 0.948 46 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.715 3.568 16.002 16.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.137 4.137 3 C 0.119 3.881 4 H -0.021 1.021 5 C -0.559 4.559 6 H 0.074 0.926 7 C -0.183 4.183 8 N -0.558 5.558 9 Si 0.779 3.221 10 H -0.191 1.191 11 H -0.209 1.209 12 H -0.208 1.208 13 N -0.307 5.307 14 C -0.021 4.021 15 H 0.068 0.932 16 C -0.170 4.170 17 C -0.107 4.107 18 H 0.080 0.920 19 C -0.200 4.200 20 C -0.130 4.130 21 C -0.063 4.063 22 C -0.199 4.199 23 C -0.191 4.191 24 C -0.120 4.120 25 H 0.050 0.950 26 H 0.071 0.929 27 H 0.054 0.946 28 H 0.074 0.926 29 H 0.033 0.967 30 H 0.069 0.931 31 H 0.145 0.855 32 H 0.080 0.920 33 H 0.047 0.953 34 H 0.088 0.912 35 H 0.060 0.940 36 H 0.076 0.924 37 H 0.094 0.906 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.071 0.929 44 H 0.085 0.915 45 H 0.071 0.929 46 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.338 2.946 16.025 16.348 hybrid contribution 0.701 0.655 -1.751 1.997 sum 2.039 3.600 14.274 14.861 Atomic orbital electron populations 1.21292 0.95948 0.98214 1.00859 1.21312 0.96295 0.97987 0.98081 1.18831 0.90452 0.91866 0.86992 1.02141 1.21503 1.31076 1.11808 0.91472 0.92630 1.25627 0.95288 0.95658 1.01735 1.70035 1.37774 1.24024 1.23951 0.85582 0.78025 0.78766 0.79721 1.19090 1.20949 1.20770 1.60728 1.49424 1.15183 1.05388 1.21594 0.91479 0.97315 0.91680 0.93188 1.22207 0.97689 0.99564 0.97587 1.21113 0.95518 0.99398 0.94677 0.92039 1.21796 0.97857 0.98763 1.01553 1.21587 0.96306 0.98663 0.96424 1.20531 0.95318 0.95416 0.95036 1.21943 1.00575 0.96008 1.01423 1.21794 0.99648 1.01852 0.95824 1.21448 0.97146 1.01261 0.92192 0.95034 0.92889 0.94575 0.92605 0.96668 0.93122 0.85478 0.92036 0.95337 0.91206 0.93985 0.92391 0.90574 0.91700 0.91474 0.93235 0.93879 0.92358 0.92866 0.91536 0.92892 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.79 9.52 71.98 0.69 -4.10 16 2 C -0.10 -4.91 5.57 30.59 0.17 -4.74 16 3 C 0.23 11.58 2.11 44.17 0.09 11.67 16 4 H -0.04 -2.25 7.26 -2.39 -0.02 -2.27 16 5 C -0.52 -28.40 7.28 25.60 0.19 -28.22 16 6 H 0.06 3.00 7.61 -2.91 -0.02 2.98 16 7 C 0.02 0.87 5.30 84.65 0.45 1.32 16 8 N -0.92 -53.45 11.32 21.45 0.24 -53.21 16 9 Si 0.95 43.94 29.54 68.60 2.03 45.96 16 10 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 11 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 12 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 13 N -0.68 -28.65 5.35 -473.31 -2.53 -31.18 16 14 C 0.09 3.18 1.99 44.91 0.09 3.27 16 15 H 0.05 1.99 5.46 -2.39 -0.01 1.98 16 16 C -0.13 -4.29 4.44 30.59 0.14 -4.16 16 17 C -0.09 -2.26 2.45 -10.79 -0.03 -2.29 16 18 H 0.06 1.69 6.43 -2.39 -0.02 1.68 16 19 C -0.14 -3.18 9.19 71.98 0.66 -2.52 16 20 C -0.09 -1.96 4.01 30.59 0.12 -1.84 16 21 C -0.06 -1.42 0.77 -52.20 -0.04 -1.46 16 22 C -0.14 -3.36 7.78 71.98 0.56 -2.80 16 23 C -0.13 -2.47 8.47 71.98 0.61 -1.86 16 24 C -0.08 -2.37 4.33 30.58 0.13 -2.24 16 25 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.05 2.25 7.71 -2.39 -0.02 2.24 16 27 H 0.04 1.75 7.10 -2.38 -0.02 1.73 16 28 H 0.06 3.14 6.06 -2.39 -0.01 3.12 16 29 H 0.01 0.70 7.51 -2.39 -0.02 0.69 16 30 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 31 H 0.33 13.79 7.91 -89.69 -0.71 13.08 16 32 H 0.06 1.92 8.13 -2.38 -0.02 1.90 16 33 H 0.03 1.10 7.58 -2.39 -0.02 1.08 16 34 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 36 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 37 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 38 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 39 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.04 1.18 4.81 -2.39 -0.01 1.17 16 42 H 0.06 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 44 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 45 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.06 1.66 8.14 -2.38 -0.02 1.64 16 Total: -1.00 -58.56 338.47 3.77 -54.79 By element: Atomic # 1 Polarization: 23.40 SS G_CDS: 0.20 Total: 23.60 kcal Atomic # 6 Polarization: -43.80 SS G_CDS: 3.83 Total: -39.97 kcal Atomic # 7 Polarization: -82.11 SS G_CDS: -2.29 Total: -84.39 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.96 kcal Total: -58.56 3.77 -54.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000227022769.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.518 kcal (2) G-P(sol) polarization free energy of solvation -58.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.794 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds