Wall clock time and date at job start Mon Mar 30 2020 06:56:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.01830 * 2 1 4 4 C 1.54261 * 110.02891 * 238.60579 * 2 1 3 5 5 C 1.54883 * 104.19796 * 264.27690 * 4 2 1 6 6 C 1.54887 * 102.74989 * 322.05796 * 5 4 2 7 7 H 1.08996 * 110.49218 * 279.13154 * 6 5 4 8 8 N 1.46899 * 110.48931 * 156.61700 * 6 5 4 9 9 C 1.46907 * 111.00008 * 79.77720 * 8 6 5 10 10 C 1.52995 * 109.47212 * 179.97438 * 9 8 6 11 11 C 1.52994 * 109.47588 * 300.00350 * 10 9 8 12 12 C 1.52999 * 109.46799 * 60.00948 * 10 9 8 13 13 C 1.52997 * 109.46991 * 180.02562 * 10 9 8 14 14 C 1.50694 * 109.47412 * 180.02562 * 13 10 9 15 15 H 1.08004 * 120.00160 * 0.02562 * 14 13 10 16 16 C 1.37883 * 120.00403 * 180.02562 * 14 13 10 17 17 N 1.31517 * 119.99651 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99895 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47515 * 90.00110 * 18 16 14 20 20 H 1.48506 * 109.46632 * 209.99880 * 18 16 14 21 21 H 1.48494 * 109.47430 * 329.99795 * 18 16 14 22 22 C 1.54088 * 110.15240 * 121.34285 * 2 1 3 23 23 H 1.09006 * 110.15461 * 238.48183 * 22 2 1 24 24 C 1.52998 * 110.00748 * 359.97438 * 22 2 1 25 25 H 1.08997 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47012 * 299.93995 * 1 2 3 27 27 H 1.08997 * 109.47035 * 59.93660 * 1 2 3 28 28 H 1.09001 * 110.48568 * 145.59768 * 4 2 1 29 29 H 1.09000 * 110.60401 * 23.01405 * 4 2 1 30 30 H 1.09007 * 110.75926 * 203.74502 * 5 4 2 31 31 H 1.09003 * 110.75966 * 80.37572 * 5 4 2 32 32 H 1.00891 * 111.00712 * 203.73640 * 8 6 5 33 33 H 1.08994 * 109.47368 * 300.00841 * 9 8 6 34 34 H 1.09006 * 109.46313 * 60.00142 * 9 8 6 35 35 H 1.09003 * 109.46840 * 60.00402 * 11 10 9 36 36 H 1.09002 * 109.47387 * 179.97438 * 11 10 9 37 37 H 1.08996 * 109.47352 * 300.00556 * 11 10 9 38 38 H 1.08994 * 109.47724 * 59.99454 * 12 10 9 39 39 H 1.09002 * 109.47050 * 179.97438 * 12 10 9 40 40 H 1.09003 * 109.47264 * 299.99375 * 12 10 9 41 41 H 1.09004 * 109.47621 * 300.00349 * 13 10 9 42 42 H 1.09006 * 109.47192 * 60.00363 * 13 10 9 43 43 H 0.96997 * 119.99165 * 180.02562 * 17 16 14 44 44 H 1.08999 * 109.47098 * 182.82349 * 24 22 2 45 45 H 1.09002 * 109.47481 * 302.82628 * 24 22 2 46 46 H 1.09001 * 109.46656 * 62.82428 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0583 -0.7550 -1.2371 5 6 2.3291 -2.1895 -0.7197 6 6 2.8890 -1.9399 0.7026 7 1 3.9459 -1.6775 0.6561 8 7 2.6916 -3.1247 1.5482 9 6 3.7157 -4.1423 1.2761 10 6 3.4779 -5.3580 2.1740 11 6 3.5593 -4.9322 3.6413 12 6 2.0922 -5.9400 1.8879 13 6 4.5448 -6.4175 1.8910 14 6 4.3104 -7.6152 2.7750 15 1 3.4828 -7.6205 3.4690 16 6 5.1523 -8.7044 2.6978 17 7 6.1597 -8.6982 1.8524 18 14 4.8611 -10.1893 3.7931 19 1 3.9633 -11.1476 3.0997 20 1 6.1584 -10.8500 4.0864 21 1 4.2304 -9.7510 5.0640 22 6 2.0609 -0.7524 1.2355 23 1 2.6925 -0.0949 1.8329 24 6 0.8916 -1.2651 2.0785 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5129 0.8906 27 1 -0.3633 0.5148 -0.8894 28 1 2.9805 -0.2989 -1.5973 29 1 1.3074 -0.7698 -2.0271 30 1 3.0687 -2.6919 -1.3433 31 1 1.4046 -2.7652 -0.6754 32 1 2.6817 -2.8741 2.5255 33 1 3.6580 -4.4453 0.2307 34 1 4.7029 -3.7277 1.4803 35 1 2.7994 -4.1773 3.8432 36 1 3.3895 -5.7983 4.2810 37 1 4.5465 -4.5175 3.8450 38 1 2.0341 -6.2434 0.8427 39 1 1.9229 -6.8065 2.5273 40 1 1.3322 -5.1851 2.0898 41 1 4.4873 -6.7210 0.8457 42 1 5.5320 -6.0026 2.0951 43 1 6.7517 -9.4646 1.7980 44 1 1.2759 -1.7518 2.9749 45 1 0.2549 -0.4278 2.3643 46 1 0.3109 -1.9811 1.4969 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229696920.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:15 Heat of formation + Delta-G solvation = -34.617910 kcal Electronic energy + Delta-G solvation = -19904.465737 eV Core-core repulsion = 17213.464720 eV Total energy + Delta-G solvation = -2691.001017 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.51125 -37.13259 -33.73176 -32.09762 -31.31592 -29.26164 -26.89349 -26.28978 -25.35571 -25.12451 -24.25744 -22.31799 -19.75489 -18.66005 -17.74639 -16.36105 -16.18683 -15.45036 -15.06512 -14.51139 -14.12135 -13.77963 -13.28887 -13.10027 -12.89726 -12.68916 -12.63334 -12.15246 -11.95610 -11.86187 -11.43892 -11.28696 -11.07671 -10.91785 -10.80714 -10.73046 -10.64873 -10.47719 -10.45885 -10.41406 -10.28032 -10.17070 -10.02616 -9.63162 -8.96618 -8.78179 -8.29032 -7.98272 -5.93669 -3.93584 3.35029 3.41457 3.44260 4.42203 4.49309 4.52931 4.60899 4.91014 5.27170 5.35834 5.36678 5.41470 5.42199 5.46378 5.58338 5.62452 5.75293 5.79229 5.81211 5.89679 5.93392 6.01307 6.03455 6.09309 6.17205 6.22212 6.30279 6.34699 6.38968 6.46450 6.54180 6.57604 6.71207 6.84563 6.87129 7.25471 7.29989 7.31455 7.52631 7.73177 7.79579 7.90277 8.07081 8.51779 9.11955 9.69056 11.18073 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.044823 B = 0.004201 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.522861 B = 6663.804756 C = 6902.392555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.089 4.089 3 H 0.064 0.936 4 C -0.121 4.121 5 C -0.110 4.110 6 C 0.083 3.917 7 H 0.039 0.961 8 N -0.676 5.676 9 C 0.069 3.931 10 C -0.058 4.058 11 C -0.128 4.128 12 C -0.115 4.115 13 C 0.034 3.966 14 C -0.506 4.506 15 H 0.059 0.941 16 C 0.054 3.946 17 N -0.898 5.898 18 Si 0.887 3.113 19 H -0.282 1.282 20 H -0.288 1.288 21 H -0.275 1.275 22 C -0.092 4.092 23 H 0.063 0.937 24 C -0.134 4.134 25 H 0.062 0.938 26 H 0.054 0.946 27 H 0.046 0.954 28 H 0.060 0.940 29 H 0.064 0.936 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.338 0.662 33 H 0.065 0.935 34 H 0.020 0.980 35 H 0.032 0.968 36 H 0.063 0.937 37 H 0.039 0.961 38 H 0.038 0.962 39 H 0.053 0.947 40 H 0.042 0.958 41 H 0.014 0.986 42 H 0.012 0.988 43 H 0.258 0.742 44 H 0.052 0.948 45 H 0.047 0.953 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.359 17.000 -2.824 19.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.108 4.108 3 H 0.082 0.918 4 C -0.159 4.159 5 C -0.148 4.148 6 C -0.027 4.027 7 H 0.057 0.943 8 N -0.309 5.309 9 C -0.059 4.059 10 C -0.058 4.058 11 C -0.186 4.186 12 C -0.172 4.172 13 C -0.004 4.004 14 C -0.544 4.544 15 H 0.077 0.923 16 C -0.146 4.146 17 N -0.538 5.538 18 Si 0.716 3.284 19 H -0.208 1.208 20 H -0.214 1.214 21 H -0.200 1.200 22 C -0.111 4.111 23 H 0.081 0.919 24 C -0.191 4.191 25 H 0.081 0.919 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.083 0.917 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.159 0.841 33 H 0.083 0.917 34 H 0.038 0.962 35 H 0.051 0.949 36 H 0.082 0.918 37 H 0.058 0.942 38 H 0.057 0.943 39 H 0.072 0.928 40 H 0.061 0.939 41 H 0.033 0.967 42 H 0.030 0.970 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.066 0.934 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -9.670 16.610 -3.286 19.499 hybrid contribution 0.946 -0.508 0.926 1.418 sum -8.724 16.102 -2.360 18.465 Atomic orbital electron populations 1.21958 0.95108 1.02174 1.00870 1.21723 0.95859 0.98591 0.94615 0.91760 1.22407 1.00447 0.96072 0.96991 1.22479 1.01465 0.95908 0.94994 1.22363 0.96598 0.89816 0.93901 0.94289 1.60781 1.50521 1.10094 1.09530 1.22123 0.91188 0.92347 1.00277 1.20611 0.97765 0.94126 0.93308 1.21764 0.99065 1.00329 0.97422 1.21583 0.95585 0.99547 1.00472 1.19120 0.92372 0.92068 0.96821 1.21250 1.12028 1.00300 1.20847 0.92315 1.25019 0.95370 0.98531 0.95693 1.69973 1.16612 1.30518 1.36703 0.86669 0.77392 0.83297 0.81089 1.20788 1.21416 1.19952 1.21892 0.97110 0.95859 0.96200 0.91897 1.21777 0.97515 1.00317 0.99495 0.91898 0.92680 0.93455 0.92105 0.91713 0.92141 0.90492 0.84139 0.91683 0.96186 0.94869 0.91785 0.94198 0.94266 0.92843 0.93871 0.96747 0.97003 0.93204 0.92932 0.93403 0.91361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.26 7.88 37.16 0.29 -0.97 16 2 C -0.09 -0.85 3.50 -89.39 -0.31 -1.16 16 3 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 4 C -0.12 -1.21 6.37 -25.08 -0.16 -1.37 16 5 C -0.11 -1.34 6.17 -24.74 -0.15 -1.49 16 6 C 0.08 1.06 3.00 -66.06 -0.20 0.86 16 7 H 0.04 0.53 7.98 -51.93 -0.41 0.12 16 8 N -0.68 -9.78 4.65 -104.98 -0.49 -10.27 16 9 C 0.07 1.22 4.49 -3.82 -0.02 1.20 16 10 C -0.06 -1.16 0.60 -154.52 -0.09 -1.25 16 11 C -0.13 -2.42 7.89 37.15 0.29 -2.13 16 12 C -0.11 -2.24 8.06 37.16 0.30 -1.94 16 13 C 0.03 0.86 4.04 -27.89 -0.11 0.75 16 14 C -0.51 -13.97 7.65 -34.44 -0.26 -14.24 16 15 H 0.06 1.58 5.68 -52.48 -0.30 1.28 16 16 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 17 N -0.90 -27.11 13.29 55.43 0.74 -26.37 16 18 Si 0.89 21.76 29.54 -169.99 -5.02 16.74 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 21 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 22 C -0.09 -0.98 3.41 -89.39 -0.31 -1.28 16 23 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 24 C -0.13 -1.40 7.08 37.16 0.26 -1.14 16 25 H 0.06 0.60 6.75 -51.93 -0.35 0.25 16 26 H 0.05 0.45 6.76 -51.92 -0.35 0.10 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.60 7.85 -51.93 -0.41 0.19 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.34 4.76 4.99 -39.30 -0.20 4.57 16 33 H 0.06 1.19 7.86 -51.93 -0.41 0.79 16 34 H 0.02 0.36 8.10 -51.93 -0.42 -0.06 16 35 H 0.03 0.53 6.57 -51.93 -0.34 0.19 16 36 H 0.06 1.31 6.62 -51.93 -0.34 0.96 16 37 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.04 0.78 8.14 -51.93 -0.42 0.35 16 39 H 0.05 1.12 6.62 -51.93 -0.34 0.77 16 40 H 0.04 0.75 7.60 -51.93 -0.39 0.36 16 41 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 42 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 43 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 44 H 0.05 0.58 6.69 -51.93 -0.35 0.23 16 45 H 0.05 0.44 6.61 -51.93 -0.34 0.10 16 46 H 0.07 0.79 6.89 -51.93 -0.36 0.43 16 LS Contribution 337.69 15.07 5.09 5.09 Total: -1.00 -28.55 337.69 -8.93 -37.48 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -8.68 Total: 0.04 kcal Atomic # 6 Polarization: -22.14 SS G_CDS: -0.56 Total: -22.71 kcal Atomic # 7 Polarization: -36.89 SS G_CDS: 0.25 Total: -36.64 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -5.02 Total: 16.74 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -28.55 -8.93 -37.48 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229696920.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.863 kcal (2) G-P(sol) polarization free energy of solvation -28.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds