Wall clock time and date at job start Mon Mar 30 2020 06:56:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08998 * 110.01830 * 2 1 4 4 C 1.54261 * 110.02891 * 238.60579 * 2 1 3 5 5 C 1.54883 * 104.19796 * 264.27690 * 4 2 1 6 6 C 1.54887 * 102.74989 * 322.05796 * 5 4 2 7 7 H 1.08996 * 110.49218 * 279.13154 * 6 5 4 8 8 N 1.46899 * 110.48931 * 156.61700 * 6 5 4 9 9 C 1.46907 * 111.00008 * 79.77720 * 8 6 5 10 10 C 1.52995 * 109.47212 * 179.97438 * 9 8 6 11 11 C 1.52994 * 109.47588 * 300.00350 * 10 9 8 12 12 C 1.52999 * 109.46799 * 60.00948 * 10 9 8 13 13 C 1.52997 * 109.46991 * 180.02562 * 10 9 8 14 14 C 1.50694 * 109.47412 * 180.02562 * 13 10 9 15 15 H 1.08004 * 120.00160 * 0.02562 * 14 13 10 16 16 C 1.37883 * 120.00403 * 180.02562 * 14 13 10 17 17 N 1.31517 * 119.99651 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 119.99895 * 180.02562 * 16 14 13 19 19 H 1.48496 * 109.47515 * 90.00110 * 18 16 14 20 20 H 1.48506 * 109.46632 * 209.99880 * 18 16 14 21 21 H 1.48494 * 109.47430 * 329.99795 * 18 16 14 22 22 C 1.54088 * 110.15240 * 121.34285 * 2 1 3 23 23 H 1.09006 * 110.15461 * 238.48183 * 22 2 1 24 24 C 1.52998 * 110.00748 * 359.97438 * 22 2 1 25 25 H 1.08997 * 109.47382 * 179.97438 * 1 2 3 26 26 H 1.09007 * 109.47012 * 299.93995 * 1 2 3 27 27 H 1.08997 * 109.47035 * 59.93660 * 1 2 3 28 28 H 1.09001 * 110.48568 * 145.59768 * 4 2 1 29 29 H 1.09000 * 110.60401 * 23.01405 * 4 2 1 30 30 H 1.09007 * 110.75926 * 203.74502 * 5 4 2 31 31 H 1.09003 * 110.75966 * 80.37572 * 5 4 2 32 32 H 1.00891 * 111.00712 * 203.73640 * 8 6 5 33 33 H 1.08994 * 109.47368 * 300.00841 * 9 8 6 34 34 H 1.09006 * 109.46313 * 60.00142 * 9 8 6 35 35 H 1.09003 * 109.46840 * 60.00402 * 11 10 9 36 36 H 1.09002 * 109.47387 * 179.97438 * 11 10 9 37 37 H 1.08996 * 109.47352 * 300.00556 * 11 10 9 38 38 H 1.08994 * 109.47724 * 59.99454 * 12 10 9 39 39 H 1.09002 * 109.47050 * 179.97438 * 12 10 9 40 40 H 1.09003 * 109.47264 * 299.99375 * 12 10 9 41 41 H 1.09004 * 109.47621 * 300.00349 * 13 10 9 42 42 H 1.09006 * 109.47192 * 60.00363 * 13 10 9 43 43 H 0.96997 * 119.99165 * 180.02562 * 17 16 14 44 44 H 1.08999 * 109.47098 * 182.82349 * 24 22 2 45 45 H 1.09002 * 109.47481 * 302.82628 * 24 22 2 46 46 H 1.09001 * 109.46656 * 62.82428 * 24 22 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0241 0.0000 4 6 2.0583 -0.7550 -1.2371 5 6 2.3291 -2.1895 -0.7197 6 6 2.8890 -1.9399 0.7026 7 1 3.9459 -1.6775 0.6561 8 7 2.6916 -3.1247 1.5482 9 6 3.7157 -4.1423 1.2761 10 6 3.4779 -5.3580 2.1740 11 6 3.5593 -4.9322 3.6413 12 6 2.0922 -5.9400 1.8879 13 6 4.5448 -6.4175 1.8910 14 6 4.3104 -7.6152 2.7750 15 1 3.4828 -7.6205 3.4690 16 6 5.1523 -8.7044 2.6978 17 7 6.1597 -8.6982 1.8524 18 14 4.8611 -10.1893 3.7931 19 1 3.9633 -11.1476 3.0997 20 1 6.1584 -10.8500 4.0864 21 1 4.2304 -9.7510 5.0640 22 6 2.0609 -0.7524 1.2355 23 1 2.6925 -0.0949 1.8329 24 6 0.8916 -1.2651 2.0785 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5129 0.8906 27 1 -0.3633 0.5148 -0.8894 28 1 2.9805 -0.2989 -1.5973 29 1 1.3074 -0.7698 -2.0271 30 1 3.0687 -2.6919 -1.3433 31 1 1.4046 -2.7652 -0.6754 32 1 2.6817 -2.8741 2.5255 33 1 3.6580 -4.4453 0.2307 34 1 4.7029 -3.7277 1.4803 35 1 2.7994 -4.1773 3.8432 36 1 3.3895 -5.7983 4.2810 37 1 4.5465 -4.5175 3.8450 38 1 2.0341 -6.2434 0.8427 39 1 1.9229 -6.8065 2.5273 40 1 1.3322 -5.1851 2.0898 41 1 4.4873 -6.7210 0.8457 42 1 5.5320 -6.0026 2.0951 43 1 6.7517 -9.4646 1.7980 44 1 1.2759 -1.7518 2.9749 45 1 0.2549 -0.4278 2.3643 46 1 0.3109 -1.9811 1.4969 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229696920.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:14 Heat of formation + Delta-G solvation = -49.125396 kcal Electronic energy + Delta-G solvation = -19905.094829 eV Core-core repulsion = 17213.464720 eV Total energy + Delta-G solvation = -2691.630109 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.49514 -38.66876 -35.25692 -33.94919 -32.18229 -30.35569 -28.83613 -27.88851 -26.72119 -25.97787 -25.46630 -24.11402 -20.71965 -19.77866 -19.17370 -18.33336 -17.24065 -16.75461 -16.42633 -16.07228 -15.51742 -14.94770 -14.72727 -14.52396 -14.23412 -13.88928 -13.71650 -13.52249 -13.41906 -13.11984 -12.81985 -12.70870 -12.53432 -12.43135 -12.25141 -12.19069 -12.05442 -11.87353 -11.75257 -11.55039 -11.37311 -11.29397 -11.23573 -11.11767 -10.83584 -10.65924 -10.50731 -9.23395 -8.14091 -6.21326 1.40825 1.41528 1.52122 2.43759 3.19780 3.30468 3.61885 3.75276 4.03502 4.16631 4.23276 4.38481 4.43647 4.50137 4.53706 4.60918 4.63108 4.73911 4.77938 4.81562 4.84653 4.95208 4.98424 5.07911 5.08665 5.15710 5.16902 5.21764 5.23051 5.28190 5.33895 5.41877 5.50682 5.51708 5.53730 5.53996 5.59075 5.67324 5.74310 5.87980 5.92877 6.20324 6.38266 6.61113 6.93928 7.46111 8.98442 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.044823 B = 0.004201 C = 0.004056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 624.522861 B = 6663.804756 C = 6902.392555 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 H 0.076 0.924 4 C -0.116 4.116 5 C -0.111 4.111 6 C 0.079 3.921 7 H 0.030 0.970 8 N -0.668 5.668 9 C 0.083 3.917 10 C -0.054 4.054 11 C -0.121 4.121 12 C -0.104 4.104 13 C 0.040 3.960 14 C -0.514 4.514 15 H 0.067 0.933 16 C -0.005 4.005 17 N -0.939 5.939 18 Si 0.957 3.043 19 H -0.275 1.275 20 H -0.287 1.287 21 H -0.262 1.262 22 C -0.088 4.088 23 H 0.069 0.931 24 C -0.131 4.131 25 H 0.053 0.947 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.046 0.954 31 H 0.067 0.933 32 H 0.343 0.657 33 H 0.052 0.948 34 H 0.010 0.990 35 H 0.067 0.933 36 H 0.047 0.953 37 H 0.034 0.966 38 H 0.028 0.972 39 H 0.038 0.962 40 H 0.069 0.931 41 H -0.018 1.018 42 H -0.018 1.018 43 H 0.259 0.741 44 H 0.047 0.953 45 H 0.063 0.937 46 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.107 18.382 -1.846 21.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.105 4.105 3 H 0.095 0.905 4 C -0.154 4.154 5 C -0.150 4.150 6 C -0.031 4.031 7 H 0.048 0.952 8 N -0.301 5.301 9 C -0.046 4.046 10 C -0.054 4.054 11 C -0.179 4.179 12 C -0.162 4.162 13 C 0.003 3.997 14 C -0.552 4.552 15 H 0.085 0.915 16 C -0.201 4.201 17 N -0.580 5.580 18 Si 0.782 3.218 19 H -0.201 1.201 20 H -0.212 1.212 21 H -0.186 1.186 22 C -0.106 4.106 23 H 0.088 0.912 24 C -0.188 4.188 25 H 0.072 0.928 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.164 0.836 33 H 0.071 0.929 34 H 0.028 0.972 35 H 0.086 0.914 36 H 0.066 0.934 37 H 0.053 0.947 38 H 0.047 0.953 39 H 0.057 0.943 40 H 0.087 0.913 41 H 0.000 1.000 42 H 0.000 1.000 43 H 0.068 0.932 44 H 0.066 0.934 45 H 0.082 0.918 46 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -11.437 18.008 -2.300 21.457 hybrid contribution 1.507 -0.902 0.572 1.847 sum -9.930 17.106 -1.728 19.855 Atomic orbital electron populations 1.21932 0.94328 1.01829 1.01763 1.21728 0.96471 0.98850 0.93468 0.90545 1.22388 1.01034 0.94430 0.97562 1.22452 1.00521 0.97307 0.94673 1.22460 0.96697 0.89875 0.94037 0.95155 1.60736 1.48766 1.10413 1.10192 1.21807 0.91674 0.92296 0.98838 1.20477 0.96256 0.93652 0.95056 1.21675 1.00029 1.00546 0.95607 1.21478 0.95659 0.99613 0.99418 1.19004 0.92787 0.93385 0.94565 1.21625 1.11911 1.00869 1.20804 0.91535 1.25939 0.95135 1.01881 0.97193 1.70119 1.17775 1.31562 1.38584 0.85561 0.77354 0.79355 0.79496 1.20107 1.21237 1.18572 1.21883 0.96963 0.94927 0.96872 0.91207 1.21747 0.97411 1.00663 0.98972 0.92832 0.91876 0.92539 0.91680 0.90800 0.93467 0.91397 0.83554 0.92943 0.97162 0.91381 0.93415 0.94658 0.95323 0.94309 0.91256 0.99988 1.00010 0.93179 0.93358 0.91782 0.92399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.07 7.88 71.98 0.57 -1.51 16 2 C -0.09 -1.42 3.50 -10.00 -0.03 -1.45 16 3 H 0.08 1.11 8.14 -2.39 -0.02 1.09 16 4 C -0.12 -2.11 6.37 31.67 0.20 -1.91 16 5 C -0.11 -2.63 6.17 31.88 0.20 -2.43 16 6 C 0.08 1.92 3.00 45.99 0.14 2.06 16 7 H 0.03 0.80 7.98 -2.39 -0.02 0.78 16 8 N -0.67 -18.54 4.65 -486.04 -2.26 -20.81 16 9 C 0.08 2.96 4.49 86.30 0.39 3.34 16 10 C -0.05 -2.19 0.60 -52.19 -0.03 -2.22 16 11 C -0.12 -4.44 7.89 71.98 0.57 -3.88 16 12 C -0.10 -4.02 8.06 71.98 0.58 -3.44 16 13 C 0.04 2.13 4.04 29.85 0.12 2.25 16 14 C -0.51 -28.86 7.65 25.60 0.20 -28.66 16 15 H 0.07 3.57 5.68 -2.91 -0.02 3.55 16 16 C 0.00 -0.28 5.46 84.66 0.46 0.18 16 17 N -0.94 -58.21 13.29 21.45 0.28 -57.93 16 18 Si 0.96 44.87 29.54 68.60 2.03 46.89 16 19 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 20 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 21 H -0.26 -11.62 7.11 99.48 0.71 -10.92 16 22 C -0.09 -1.66 3.41 -10.00 -0.03 -1.70 16 23 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 24 C -0.13 -2.40 7.08 71.98 0.51 -1.89 16 25 H 0.05 0.89 6.75 -2.39 -0.02 0.88 16 26 H 0.06 0.83 6.76 -2.38 -0.02 0.81 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.07 1.22 7.85 -2.39 -0.02 1.20 16 30 H 0.05 1.21 8.14 -2.38 -0.02 1.19 16 31 H 0.07 1.72 8.14 -2.39 -0.02 1.71 16 32 H 0.34 8.94 4.99 -89.70 -0.45 8.49 16 33 H 0.05 1.99 7.86 -2.39 -0.02 1.97 16 34 H 0.01 0.38 8.10 -2.38 -0.02 0.36 16 35 H 0.07 2.01 6.57 -2.39 -0.02 1.99 16 36 H 0.05 1.90 6.62 -2.39 -0.02 1.88 16 37 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 38 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.04 1.59 6.62 -2.39 -0.02 1.57 16 40 H 0.07 2.30 7.60 -2.39 -0.02 2.28 16 41 H -0.02 -1.07 8.14 -2.38 -0.02 -1.09 16 42 H -0.02 -1.08 8.14 -2.38 -0.02 -1.10 16 43 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 44 H 0.05 0.92 6.69 -2.39 -0.02 0.91 16 45 H 0.06 0.98 6.61 -2.39 -0.02 0.96 16 46 H 0.06 1.20 6.89 -2.39 -0.02 1.18 16 Total: -1.00 -62.28 337.69 4.35 -57.94 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.47 Total: 15.16 kcal Atomic # 6 Polarization: -45.08 SS G_CDS: 3.83 Total: -41.26 kcal Atomic # 7 Polarization: -76.76 SS G_CDS: -1.98 Total: -78.73 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Total: -62.28 4.35 -57.94 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229696920.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.810 kcal (2) G-P(sol) polarization free energy of solvation -62.283 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.347 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds