Wall clock time and date at job start Mon Mar 30 2020 06:10:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47197 * 2 1 4 4 H 1.09001 * 109.47025 * 304.14383 * 3 2 1 5 5 C 1.50694 * 109.47515 * 184.13838 * 3 2 1 6 6 H 1.08005 * 119.99948 * 240.00247 * 5 3 2 7 7 C 1.37875 * 120.00070 * 60.00011 * 5 3 2 8 8 N 1.31519 * 119.99608 * 0.02562 * 7 5 3 9 9 Si 1.86800 * 120.00139 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47177 * 59.99901 * 9 7 5 11 11 H 1.48507 * 109.46885 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.46950 * 299.99415 * 9 7 5 13 13 N 1.46905 * 109.46786 * 64.13670 * 3 2 1 14 14 C 1.46903 * 110.99799 * 206.35053 * 13 3 2 15 15 H 1.09000 * 109.47332 * 323.30155 * 14 13 3 16 16 C 1.53002 * 109.47154 * 83.30158 * 14 13 3 17 17 C 1.53004 * 109.46604 * 59.99957 * 16 14 13 18 18 C 1.52992 * 109.47281 * 60.00302 * 17 16 14 19 19 C 1.53002 * 109.47055 * 299.99422 * 18 17 16 20 20 C 1.52996 * 109.46742 * 60.00351 * 19 18 17 21 21 H 1.08998 * 109.47789 * 60.00193 * 20 19 18 22 22 C 1.53002 * 109.46919 * 179.97438 * 20 19 18 23 23 C 1.53004 * 109.47194 * 179.97438 * 22 20 19 24 24 C 1.52995 * 109.47609 * 299.99849 * 22 20 19 25 25 H 1.09001 * 109.47332 * 54.49493 * 1 2 3 26 26 H 1.09005 * 109.46922 * 174.49526 * 1 2 3 27 27 H 1.09006 * 109.46869 * 294.49057 * 1 2 3 28 28 H 1.08995 * 109.47307 * 239.99985 * 2 1 3 29 29 H 1.09004 * 109.47051 * 119.99933 * 2 1 3 30 30 H 0.97000 * 119.99895 * 180.02562 * 8 7 5 31 31 H 1.00903 * 111.00154 * 82.40246 * 13 3 2 32 32 H 1.08996 * 109.46823 * 299.99997 * 16 14 13 33 33 H 1.09001 * 109.47287 * 179.97438 * 16 14 13 34 34 H 1.09005 * 109.46625 * 180.02562 * 17 16 14 35 35 H 1.08998 * 109.47267 * 299.99362 * 17 16 14 36 36 H 1.09001 * 109.47523 * 59.99829 * 18 17 16 37 37 H 1.09007 * 109.47263 * 179.97438 * 18 17 16 38 38 H 1.08992 * 109.47479 * 299.99978 * 19 18 17 39 39 H 1.09000 * 109.46713 * 179.97438 * 19 18 17 40 40 H 1.09001 * 109.46913 * 60.00320 * 22 20 19 41 41 H 1.09001 * 109.46488 * 60.00600 * 23 22 20 42 42 H 1.08995 * 109.46992 * 180.02562 * 23 22 20 43 43 H 1.08998 * 109.47294 * 300.00640 * 23 22 20 44 44 H 1.08995 * 109.47556 * 179.97438 * 24 22 20 45 45 H 1.09001 * 109.47367 * 300.00193 * 24 22 20 46 46 H 1.09007 * 109.47061 * 59.99904 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6173 1.9773 -0.8505 5 6 3.5435 1.4438 -0.1025 6 1 4.1377 1.8923 0.6799 7 6 4.1604 0.8725 -1.1952 8 7 3.4367 0.3268 -2.1481 9 14 6.0241 0.8734 -1.3219 10 1 6.5995 0.1445 -0.1632 11 1 6.4349 0.2038 -2.5822 12 1 6.5195 2.2734 -1.3217 13 7 1.6336 2.1055 1.2463 14 6 1.5262 3.5586 1.0588 15 1 2.3106 3.8965 0.3816 16 6 0.1579 3.8962 0.4632 17 6 -0.9431 3.4218 1.4139 18 6 -0.7877 4.1232 2.7647 19 6 0.5806 3.7856 3.3602 20 6 1.6815 4.2600 2.4097 21 1 1.6019 5.3381 2.2705 22 6 3.0499 3.9229 3.0055 23 6 4.1509 4.3967 2.0546 24 6 3.2050 4.6247 4.3561 25 1 -0.3634 0.5968 -0.8366 26 1 -0.3633 -1.0230 -0.0986 27 1 -0.3633 0.4260 0.9353 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8708 -0.0756 -2.9167 31 1 2.2695 1.8840 1.9978 32 1 0.0473 3.3965 -0.4991 33 1 0.0780 4.9744 0.3245 34 1 -1.9180 3.6620 0.9894 35 1 -0.8635 2.3437 1.5530 36 1 -0.8675 5.2014 2.6256 37 1 -1.5724 3.7856 3.4418 38 1 0.6603 2.7075 3.4994 39 1 0.6914 4.2857 4.3224 40 1 3.1298 2.8448 3.1449 41 1 4.0711 5.4748 1.9149 42 1 5.1257 4.1562 2.4789 43 1 4.0403 3.8964 1.0925 44 1 4.1796 4.3842 4.7808 45 1 3.1250 5.7028 4.2167 46 1 2.4206 4.2868 5.0334 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000251369270.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:10:49 Heat of formation + Delta-G solvation = -53.921938 kcal Electronic energy + Delta-G solvation = -20994.057072 eV Core-core repulsion = 18302.218969 eV Total energy + Delta-G solvation = -2691.838102 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.62650 -37.05941 -35.76806 -33.96385 -32.67296 -30.70584 -29.52314 -27.97236 -27.48823 -24.60724 -23.85983 -22.68849 -21.34855 -20.71646 -19.57183 -18.66261 -16.86920 -16.51779 -16.16187 -15.68965 -15.22280 -14.88835 -14.49367 -14.38701 -14.05537 -13.97875 -13.93284 -13.23305 -13.16084 -13.10524 -12.98984 -12.84834 -12.58567 -12.47032 -12.40701 -12.03665 -11.94508 -11.86299 -11.79082 -11.51636 -11.46575 -11.30710 -11.00545 -10.95982 -10.63090 -10.43600 -10.37049 -8.83308 -7.98860 -6.20166 1.37118 1.38044 1.44532 2.41299 3.19495 3.78325 3.86469 3.92839 4.10120 4.30369 4.41600 4.42827 4.60147 4.64942 4.69224 4.72887 4.80013 4.82868 4.88708 4.90727 4.93513 4.96502 5.06572 5.09860 5.13683 5.21153 5.23275 5.29925 5.31852 5.41708 5.46434 5.52869 5.55761 5.57448 5.61230 5.67602 5.72085 5.73936 5.81862 5.91348 6.21086 6.30624 6.54040 6.98456 7.16532 7.51041 8.95880 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.018566 B = 0.008785 C = 0.006582 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1507.751667 B = 3186.321232 C = 4252.906438 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.102 4.102 3 C 0.227 3.773 4 H -0.006 1.006 5 C -0.546 4.546 6 H 0.056 0.944 7 C 0.019 3.981 8 N -0.913 5.913 9 Si 0.940 3.060 10 H -0.273 1.273 11 H -0.287 1.287 12 H -0.276 1.276 13 N -0.663 5.663 14 C 0.096 3.904 15 H 0.012 0.988 16 C -0.102 4.102 17 C -0.105 4.105 18 C -0.107 4.107 19 C -0.102 4.102 20 C -0.071 4.071 21 H 0.071 0.929 22 C -0.090 4.090 23 C -0.152 4.152 24 C -0.138 4.138 25 H 0.026 0.974 26 H 0.038 0.962 27 H 0.061 0.939 28 H 0.055 0.945 29 H 0.025 0.975 30 H 0.258 0.742 31 H 0.326 0.674 32 H 0.028 0.972 33 H 0.060 0.940 34 H 0.053 0.947 35 H 0.062 0.938 36 H 0.061 0.939 37 H 0.068 0.932 38 H 0.058 0.942 39 H 0.073 0.927 40 H 0.056 0.944 41 H 0.057 0.943 42 H 0.049 0.951 43 H 0.040 0.960 44 H 0.052 0.948 45 H 0.059 0.941 46 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.189 8.209 11.191 14.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.141 4.141 3 C 0.118 3.882 4 H 0.012 0.988 5 C -0.586 4.586 6 H 0.074 0.926 7 C -0.180 4.180 8 N -0.553 5.553 9 Si 0.766 3.234 10 H -0.198 1.198 11 H -0.213 1.213 12 H -0.202 1.202 13 N -0.294 5.294 14 C -0.014 4.014 15 H 0.030 0.970 16 C -0.141 4.141 17 C -0.142 4.142 18 C -0.145 4.145 19 C -0.139 4.139 20 C -0.089 4.089 21 H 0.089 0.911 22 C -0.109 4.109 23 C -0.209 4.209 24 C -0.195 4.195 25 H 0.045 0.955 26 H 0.057 0.943 27 H 0.080 0.920 28 H 0.074 0.926 29 H 0.044 0.956 30 H 0.068 0.932 31 H 0.145 0.855 32 H 0.047 0.953 33 H 0.079 0.921 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.080 0.920 37 H 0.086 0.914 38 H 0.077 0.923 39 H 0.092 0.908 40 H 0.075 0.925 41 H 0.076 0.924 42 H 0.068 0.932 43 H 0.059 0.941 44 H 0.071 0.929 45 H 0.078 0.922 46 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -5.848 8.007 10.915 14.747 hybrid contribution 2.287 -0.102 -1.041 2.515 sum -3.561 7.906 9.874 13.141 Atomic orbital electron populations 1.21542 0.96507 0.99043 1.00621 1.21344 0.94275 0.98838 0.99594 1.18849 0.91053 0.91005 0.87260 0.98765 1.22242 0.94223 1.36666 1.05421 0.92631 1.25607 1.01359 0.95288 0.95782 1.70012 1.36145 1.39141 1.10015 0.85903 0.82159 0.78071 0.77239 1.19810 1.21308 1.20183 1.60887 1.53945 1.07066 1.07479 1.21349 0.95214 0.89079 0.95749 0.97025 1.21465 0.95532 0.99235 0.97825 1.21357 0.96420 1.01124 0.95346 1.21439 0.97085 0.99916 0.96040 1.21490 0.93547 1.01275 0.97633 1.21237 0.94522 0.99185 0.93984 0.91099 1.21103 0.94243 0.99754 0.95818 1.21927 0.98401 1.00935 0.99633 1.21810 1.01773 1.00370 0.95522 0.95481 0.94292 0.92000 0.92607 0.95640 0.93246 0.85486 0.95311 0.92137 0.92805 0.91917 0.92041 0.91378 0.92331 0.90845 0.92522 0.92375 0.93206 0.94100 0.92885 0.92241 0.91419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.87 9.73 71.98 0.70 -4.17 16 2 C -0.10 -4.91 5.45 30.59 0.17 -4.75 16 3 C 0.23 11.17 1.79 44.17 0.08 11.25 16 4 H -0.01 -0.32 6.99 -2.39 -0.02 -0.33 16 5 C -0.55 -29.17 8.17 25.60 0.21 -28.96 16 6 H 0.06 2.91 6.47 -2.91 -0.02 2.89 16 7 C 0.02 1.05 5.29 84.65 0.45 1.49 16 8 N -0.91 -52.92 11.30 21.45 0.24 -52.67 16 9 Si 0.94 43.93 29.54 68.60 2.03 45.95 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.29 -13.33 7.11 99.48 0.71 -12.63 16 12 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 13 N -0.66 -26.30 4.06 -473.30 -1.92 -28.22 16 14 C 0.10 3.46 1.77 44.92 0.08 3.54 16 15 H 0.01 0.51 5.99 -2.39 -0.01 0.49 16 16 C -0.10 -3.43 5.50 30.60 0.17 -3.26 16 17 C -0.10 -2.99 5.77 30.59 0.18 -2.81 16 18 C -0.11 -2.49 5.92 30.59 0.18 -2.31 16 19 C -0.10 -2.49 4.69 30.59 0.14 -2.34 16 20 C -0.07 -1.97 1.56 -10.79 -0.02 -1.99 16 21 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 22 C -0.09 -2.52 2.26 -10.79 -0.02 -2.55 16 23 C -0.15 -4.75 8.84 71.98 0.64 -4.11 16 24 C -0.14 -2.95 8.84 71.98 0.64 -2.31 16 25 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 26 H 0.04 1.43 8.14 -2.38 -0.02 1.41 16 27 H 0.06 2.33 6.66 -2.38 -0.02 2.31 16 28 H 0.06 3.07 5.97 -2.39 -0.01 3.05 16 29 H 0.02 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 31 H 0.33 13.04 5.75 -89.69 -0.52 12.53 16 32 H 0.03 1.12 7.32 -2.39 -0.02 1.10 16 33 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.05 1.40 8.14 -2.38 -0.02 1.38 16 35 H 0.06 2.02 6.38 -2.39 -0.02 2.01 16 36 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.07 1.39 8.14 -2.38 -0.02 1.37 16 38 H 0.06 1.61 7.53 -2.39 -0.02 1.59 16 39 H 0.07 1.49 6.43 -2.39 -0.02 1.47 16 40 H 0.06 1.78 6.22 -2.39 -0.01 1.77 16 41 H 0.06 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.04 1.58 4.99 -2.39 -0.01 1.57 16 44 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 45 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 46 H 0.07 1.29 6.43 -2.38 -0.02 1.28 16 Total: -1.00 -56.91 330.93 4.34 -52.57 By element: Atomic # 1 Polarization: 25.26 SS G_CDS: 0.41 Total: 25.67 kcal Atomic # 6 Polarization: -46.88 SS G_CDS: 3.58 Total: -43.30 kcal Atomic # 7 Polarization: -79.22 SS G_CDS: -1.68 Total: -80.90 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 2.03 Total: 45.95 kcal Total: -56.91 4.34 -52.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000251369270.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.350 kcal (2) G-P(sol) polarization free energy of solvation -56.915 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.572 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds