Wall clock time and date at job start Mon Mar 30 2020 06:56:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09007 * 110.43010 * 2 1 4 4 C 1.55238 * 110.46855 * 237.34860 * 2 1 3 5 5 C 1.54894 * 102.58338 * 203.39183 * 4 2 1 6 6 C 1.54266 * 104.31305 * 37.93170 * 5 4 2 7 7 H 1.08996 * 110.03108 * 216.98559 * 6 5 4 8 8 N 1.46902 * 110.02934 * 95.60775 * 6 5 4 9 9 C 1.46894 * 111.00284 * 86.45429 * 8 6 5 10 10 C 1.52995 * 109.47263 * 179.97438 * 9 8 6 11 11 C 1.52998 * 109.47423 * 299.99636 * 10 9 8 12 12 C 1.53002 * 109.47421 * 60.00102 * 10 9 8 13 13 C 1.53007 * 109.47121 * 180.02562 * 10 9 8 14 14 C 1.50699 * 109.47002 * 180.02562 * 13 10 9 15 15 H 1.08005 * 120.00168 * 359.97438 * 14 13 10 16 16 C 1.37882 * 120.00017 * 180.02562 * 14 13 10 17 17 N 1.31510 * 119.99749 * 359.97438 * 16 14 13 18 18 Si 1.86797 * 120.00145 * 179.97438 * 16 14 13 19 19 H 1.48505 * 109.47180 * 59.99473 * 18 16 14 20 20 H 1.48493 * 109.47151 * 179.97438 * 18 16 14 21 21 H 1.48499 * 109.47173 * 299.99742 * 18 16 14 22 22 C 1.53869 * 106.60031 * 336.32486 * 6 5 4 23 23 H 1.08999 * 110.04012 * 119.28327 * 22 6 5 24 24 C 1.53007 * 110.03216 * 240.71686 * 22 6 5 25 25 H 1.08998 * 109.47193 * 297.46470 * 1 2 3 26 26 H 1.09000 * 109.46858 * 57.46401 * 1 2 3 27 27 H 1.09001 * 109.46630 * 177.45984 * 1 2 3 28 28 H 1.08996 * 110.89448 * 85.10747 * 4 2 1 29 29 H 1.08993 * 110.76342 * 321.62413 * 4 2 1 30 30 H 1.09002 * 110.48891 * 279.18596 * 5 4 2 31 31 H 1.08998 * 110.48494 * 156.67683 * 5 4 2 32 32 H 1.00904 * 111.00138 * 322.49229 * 8 6 5 33 33 H 1.08999 * 109.47279 * 300.00105 * 9 8 6 34 34 H 1.09004 * 109.47445 * 59.99836 * 9 8 6 35 35 H 1.09004 * 109.46648 * 60.00201 * 11 10 9 36 36 H 1.09001 * 109.47543 * 179.97438 * 11 10 9 37 37 H 1.09000 * 109.47392 * 300.00569 * 11 10 9 38 38 H 1.09003 * 109.47056 * 59.99590 * 12 10 9 39 39 H 1.09001 * 109.47394 * 180.02562 * 12 10 9 40 40 H 1.08998 * 109.46676 * 299.99751 * 12 10 9 41 41 H 1.08997 * 109.46846 * 299.99629 * 13 10 9 42 42 H 1.08996 * 109.47358 * 59.99819 * 13 10 9 43 43 H 0.97003 * 119.99771 * 180.02562 * 17 16 14 44 44 H 1.08998 * 109.46749 * 59.99395 * 24 22 6 45 45 H 1.08994 * 109.47142 * 179.97438 * 24 22 6 46 46 H 1.08999 * 109.46721 * 299.99862 * 24 22 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9105 1.0215 0.0000 4 6 2.0729 -0.7847 -1.2245 5 6 3.4908 -1.1988 -0.7584 6 6 3.3166 -1.5394 0.7361 7 1 4.1932 -1.2161 1.2973 8 7 3.1181 -2.9854 0.9027 9 6 4.4057 -3.6862 0.9970 10 6 4.1586 -5.1861 1.1701 11 6 3.3527 -5.4260 2.4483 12 6 3.3763 -5.7164 -0.0331 13 6 5.4997 -5.9159 1.2689 14 6 5.2563 -7.3933 1.4388 15 1 4.2460 -7.7738 1.4733 16 6 6.3233 -8.2594 1.5512 17 7 7.5534 -7.7961 1.5097 18 14 6.0215 -10.0907 1.7625 19 1 5.2631 -10.6055 0.5941 20 1 7.3231 -10.7990 1.8583 21 1 5.2384 -10.3235 3.0026 22 6 2.0699 -0.7773 1.2183 23 1 1.3176 -1.4802 1.5760 24 6 2.4506 0.1971 2.3348 25 1 -0.3633 0.4739 0.9118 26 1 -0.3633 0.5527 -0.8664 27 1 -0.3632 -1.0267 -0.0455 28 1 2.1275 -0.1433 -2.1041 29 1 1.4595 -1.6634 -1.4232 30 1 4.1899 -0.3717 -0.8822 31 1 3.8340 -2.0731 -1.3115 32 1 2.5554 -3.3618 0.1545 33 1 4.9801 -3.5149 0.0866 34 1 4.9629 -3.3088 1.8545 35 1 2.3972 -4.9061 2.3784 36 1 3.1762 -6.4946 2.5714 37 1 3.9100 -5.0483 3.3055 38 1 3.9504 -5.5454 -0.9438 39 1 3.1998 -6.7849 0.0904 40 1 2.4208 -5.1964 -0.1030 41 1 6.0742 -5.7450 0.3585 42 1 6.0567 -5.5381 2.1263 43 1 8.3040 -8.4055 1.5884 44 1 3.1842 0.9108 1.9598 45 1 1.5616 0.7320 2.6690 46 1 2.8773 -0.3571 3.1708 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000253009111.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:56:18 Heat of formation + Delta-G solvation = -58.795558 kcal Electronic energy + Delta-G solvation = -19757.887393 eV Core-core repulsion = 17065.837954 eV Total energy + Delta-G solvation = -2692.049438 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.36893 -38.58466 -35.19664 -33.92613 -32.04980 -30.87313 -28.91551 -27.89293 -27.08523 -25.57363 -24.79255 -23.91108 -21.13598 -20.53605 -19.37788 -18.32847 -16.79842 -16.63594 -16.30107 -15.53084 -15.33788 -15.01301 -14.70976 -14.47288 -14.37275 -13.95735 -13.88722 -13.61440 -13.41071 -13.30595 -12.82715 -12.73812 -12.60145 -12.50754 -12.25815 -12.20068 -12.03924 -11.98416 -11.75696 -11.64506 -11.45248 -11.37085 -11.32879 -11.17414 -10.85612 -10.65467 -10.49958 -9.18543 -8.13728 -6.21023 1.40872 1.43326 1.50629 2.44001 3.19996 3.28645 3.67199 3.75289 4.01398 4.16005 4.24017 4.36288 4.38971 4.50110 4.53688 4.62010 4.67349 4.70371 4.74504 4.82647 4.83381 4.93022 4.97638 4.99807 5.05362 5.08155 5.15747 5.21751 5.23441 5.26792 5.31371 5.37808 5.38288 5.47916 5.51703 5.53690 5.58507 5.65600 5.69812 5.87869 5.92825 6.22895 6.38838 6.61100 6.93905 7.46305 8.98546 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.041077 B = 0.004101 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 681.485438 B = 6825.319909 C = 6850.170937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 H 0.078 0.922 4 C -0.114 4.114 5 C -0.154 4.154 6 C 0.082 3.918 7 H 0.064 0.936 8 N -0.673 5.673 9 C 0.084 3.916 10 C -0.055 4.055 11 C -0.106 4.106 12 C -0.121 4.121 13 C 0.041 3.959 14 C -0.515 4.515 15 H 0.066 0.934 16 C -0.004 4.004 17 N -0.939 5.939 18 Si 0.957 3.043 19 H -0.267 1.267 20 H -0.288 1.288 21 H -0.268 1.268 22 C -0.079 4.079 23 H 0.075 0.925 24 C -0.139 4.139 25 H 0.057 0.943 26 H 0.060 0.940 27 H 0.051 0.949 28 H 0.073 0.927 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.342 0.658 33 H 0.014 0.986 34 H 0.051 0.949 35 H 0.067 0.933 36 H 0.038 0.962 37 H 0.028 0.972 38 H 0.035 0.965 39 H 0.047 0.953 40 H 0.066 0.934 41 H -0.018 1.018 42 H -0.018 1.018 43 H 0.260 0.740 44 H 0.055 0.945 45 H 0.064 0.936 46 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.766 16.268 -3.562 21.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.107 4.107 3 H 0.096 0.904 4 C -0.151 4.151 5 C -0.193 4.193 6 C -0.028 4.028 7 H 0.082 0.918 8 N -0.304 5.304 9 C -0.045 4.045 10 C -0.055 4.055 11 C -0.163 4.163 12 C -0.178 4.178 13 C 0.003 3.997 14 C -0.553 4.553 15 H 0.084 0.916 16 C -0.201 4.201 17 N -0.580 5.580 18 Si 0.782 3.218 19 H -0.192 1.192 20 H -0.213 1.213 21 H -0.193 1.193 22 C -0.098 4.098 23 H 0.094 0.906 24 C -0.196 4.196 25 H 0.076 0.924 26 H 0.079 0.921 27 H 0.070 0.930 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.162 0.838 33 H 0.032 0.968 34 H 0.070 0.930 35 H 0.086 0.914 36 H 0.057 0.943 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.001 0.999 42 H 0.001 0.999 43 H 0.068 0.932 44 H 0.074 0.926 45 H 0.083 0.917 46 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.682 16.249 -2.859 21.433 hybrid contribution 1.144 -1.125 -0.728 1.762 sum -12.538 15.124 -3.587 19.970 Atomic orbital electron populations 1.21771 0.94285 1.01794 1.01924 1.22095 0.96004 0.98932 0.93685 0.90369 1.22579 0.94826 0.99910 0.97827 1.23036 0.98508 1.01093 0.96712 1.22355 0.98134 0.87741 0.94542 0.91792 1.60670 1.15759 1.02643 1.51364 1.21795 0.90665 0.93578 0.98471 1.20492 0.95992 0.92802 0.96248 1.21492 0.99161 1.00060 0.95596 1.21669 0.98837 1.00956 0.96327 1.18999 0.92228 0.94644 0.93831 1.21595 0.92716 0.93116 1.47920 0.91590 1.25929 0.95008 1.03585 0.95566 1.70107 0.98927 1.36492 1.52465 0.85625 0.77222 0.79849 0.79124 1.19218 1.21326 1.19312 1.21807 0.96189 0.96360 0.95445 0.90634 1.21806 1.01455 0.98628 0.97733 0.92375 0.92094 0.92965 0.90835 0.91624 0.91154 0.93000 0.83777 0.96762 0.93010 0.91377 0.94282 0.95256 0.94597 0.93428 0.91493 0.99927 0.99936 0.93161 0.92589 0.91748 0.93670 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 9.12 71.98 0.66 -1.34 16 2 C -0.09 -1.44 3.00 -9.60 -0.03 -1.47 16 3 H 0.08 1.19 7.83 -2.38 -0.02 1.17 16 4 C -0.11 -1.99 6.36 32.01 0.20 -1.78 16 5 C -0.15 -3.30 6.19 31.67 0.20 -3.10 16 6 C 0.08 1.97 2.88 45.64 0.13 2.10 16 7 H 0.06 1.68 7.36 -2.39 -0.02 1.66 16 8 N -0.67 -18.86 5.32 -487.86 -2.59 -21.46 16 9 C 0.08 2.98 4.43 86.30 0.38 3.36 16 10 C -0.05 -2.23 0.60 -52.18 -0.03 -2.26 16 11 C -0.11 -4.11 8.06 71.98 0.58 -3.53 16 12 C -0.12 -4.43 7.89 71.98 0.57 -3.86 16 13 C 0.04 2.15 4.04 29.85 0.12 2.27 16 14 C -0.52 -28.93 7.65 25.60 0.20 -28.74 16 15 H 0.07 3.54 5.68 -2.91 -0.02 3.52 16 16 C 0.00 -0.24 5.46 84.66 0.46 0.22 16 17 N -0.94 -58.11 13.29 21.45 0.28 -57.82 16 18 Si 0.96 44.83 29.54 68.60 2.03 46.86 16 19 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 20 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 22 C -0.08 -1.57 2.87 -10.07 -0.03 -1.60 16 23 H 0.08 1.67 7.61 -2.39 -0.02 1.65 16 24 C -0.14 -2.53 8.85 71.98 0.64 -1.90 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.05 0.79 8.12 -2.39 -0.02 0.77 16 28 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.07 1.17 8.05 -2.39 -0.02 1.16 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.05 1.25 7.65 -2.39 -0.02 1.24 16 32 H 0.34 9.09 6.51 -89.69 -0.58 8.50 16 33 H 0.01 0.52 7.78 -2.39 -0.02 0.50 16 34 H 0.05 1.95 8.07 -2.38 -0.02 1.93 16 35 H 0.07 2.29 7.60 -2.38 -0.02 2.27 16 36 H 0.04 1.61 6.62 -2.39 -0.02 1.59 16 37 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.05 1.89 6.62 -2.39 -0.02 1.88 16 40 H 0.07 2.00 6.57 -2.39 -0.02 1.98 16 41 H -0.02 -1.03 8.14 -2.39 -0.02 -1.05 16 42 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 43 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 44 H 0.06 0.95 8.12 -2.39 -0.02 0.93 16 45 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 46 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -61.99 346.79 4.08 -57.90 By element: Atomic # 1 Polarization: 15.83 SS G_CDS: 0.32 Total: 16.16 kcal Atomic # 6 Polarization: -45.68 SS G_CDS: 4.04 Total: -41.63 kcal Atomic # 7 Polarization: -76.97 SS G_CDS: -2.31 Total: -79.28 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -61.99 4.08 -57.90 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000253009111.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.893 kcal (2) G-P(sol) polarization free energy of solvation -61.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds