Wall clock time and date at job start Mon Mar 30 2020 06:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46904 * 2 1 4 4 H 1.08996 * 109.47524 * 38.01621 * 3 2 1 5 5 C 1.52997 * 109.47136 * 158.01745 * 3 2 1 6 6 H 1.09003 * 109.47483 * 54.37971 * 5 3 2 7 7 C 1.53002 * 109.47538 * 174.37942 * 5 3 2 8 8 C 1.53006 * 109.47535 * 294.38270 * 5 3 2 9 9 C 1.50695 * 109.47435 * 174.99765 * 8 5 3 10 10 H 1.07997 * 119.99933 * 359.97438 * 9 8 5 11 11 C 1.37882 * 119.99629 * 179.97438 * 9 8 5 12 12 N 1.31513 * 120.00109 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 119.99631 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47512 * 359.97438 * 13 11 9 15 15 H 1.48509 * 109.47084 * 120.00306 * 13 11 9 16 16 H 1.48506 * 109.47109 * 240.00172 * 13 11 9 17 17 N 1.46902 * 109.47201 * 278.01452 * 3 2 1 18 18 C 1.48000 * 110.99416 * 81.09500 * 17 3 2 19 19 C 1.50450 * 112.82702 * 191.34363 * 18 17 3 20 20 C 1.54315 * 108.49434 * 93.73198 * 19 18 17 21 21 C 1.45875 * 112.18264 * 281.46844 * 20 19 18 22 22 C 1.54305 * 112.19102 * 61.12014 * 21 20 19 23 23 C 1.48002 * 110.99854 * 312.37946 * 17 3 2 24 24 H 1.08999 * 109.47644 * 306.56947 * 1 2 3 25 25 H 1.09003 * 109.47202 * 66.56629 * 1 2 3 26 26 H 1.09006 * 109.47232 * 186.56392 * 1 2 3 27 27 H 1.08992 * 109.47380 * 239.99942 * 2 1 3 28 28 H 1.09006 * 109.46781 * 119.99749 * 2 1 3 29 29 H 1.09000 * 109.46599 * 304.98103 * 7 5 3 30 30 H 1.08999 * 109.46698 * 64.97705 * 7 5 3 31 31 H 1.09001 * 109.47288 * 184.97682 * 7 5 3 32 32 H 1.09005 * 109.46638 * 295.00009 * 8 5 3 33 33 H 1.09003 * 109.46800 * 54.99246 * 8 5 3 34 34 H 0.97002 * 119.99825 * 180.02562 * 12 11 9 35 35 H 1.08991 * 108.81782 * 312.21014 * 18 17 3 36 36 H 1.09001 * 108.80951 * 70.48677 * 18 17 3 37 37 H 1.09004 * 109.63068 * 334.03179 * 19 18 17 38 38 H 1.09001 * 109.63656 * 213.43725 * 19 18 17 39 39 H 1.08999 * 108.93707 * 160.76722 * 20 19 18 40 40 H 1.08997 * 108.93439 * 42.16479 * 20 19 18 41 41 H 1.09001 * 108.93437 * 181.82119 * 21 20 19 42 42 H 1.09003 * 108.93921 * 300.42082 * 21 20 19 43 43 H 1.09001 * 109.63405 * 41.16466 * 22 21 20 44 44 H 1.08999 * 109.63172 * 161.76065 * 22 21 20 45 45 H 1.08993 * 108.81269 * 323.96818 * 23 17 3 46 46 H 1.09002 * 108.71823 * 205.63653 * 23 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3978 2.0550 0.6329 5 6 3.4710 1.4775 0.5399 6 1 4.0921 0.7879 -0.0318 7 6 4.0308 2.8955 0.4098 8 6 3.4709 1.0624 2.0126 9 6 4.8906 0.9780 2.5109 10 1 5.7110 1.1979 1.8439 11 6 5.1421 0.6199 3.8184 12 7 4.1431 0.3516 4.6305 13 14 6.9018 0.5159 4.4363 14 1 7.8348 0.8625 3.3342 15 1 7.0885 1.4672 5.5613 16 1 7.1812 -0.8655 4.9045 17 7 2.0211 1.9686 -1.3715 18 6 0.6632 2.4222 -1.7468 19 6 0.5307 2.7134 -3.2169 20 6 -0.0005 1.4470 -3.9208 21 6 1.0465 0.4531 -4.1302 22 6 1.6626 -0.0332 -2.8017 23 6 2.6337 1.0082 -2.3163 24 1 -0.3634 0.6123 0.8253 25 1 -0.3634 0.4087 -0.9429 26 1 -0.3634 -1.0210 0.1175 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.9492 3.2246 -0.6261 30 1 3.4637 3.5702 1.0512 31 1 5.0781 2.9019 0.7118 32 1 2.9236 1.8011 2.5982 33 1 2.9911 0.0891 2.1157 34 1 4.3200 0.1000 5.5505 35 1 -0.0537 1.6472 -1.4760 36 1 0.4277 3.3271 -1.1867 37 1 1.5051 2.9789 -3.6269 38 1 -0.1689 3.5359 -3.3657 39 1 -0.4194 1.7286 -4.8868 40 1 -0.7888 1.0071 -3.3099 41 1 0.6226 -0.4016 -4.6574 42 1 1.8326 0.8915 -4.7451 43 1 0.8744 -0.1722 -2.0616 44 1 2.1865 -0.9751 -2.9641 45 1 3.4657 0.5088 -1.8199 46 1 3.0171 1.5588 -3.1754 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259706213.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:48 Heat of formation + Delta-G solvation = -4.693434 kcal Electronic energy + Delta-G solvation = -20624.498382 eV Core-core repulsion = 17934.794988 eV Total energy + Delta-G solvation = -2689.703394 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.09868 -36.40258 -33.58658 -32.28902 -31.70610 -31.55656 -27.43224 -26.45163 -25.26801 -24.44604 -22.73645 -20.79505 -20.64555 -19.61273 -18.52539 -16.53430 -16.00231 -15.79521 -14.95584 -14.45687 -14.00755 -13.90995 -13.41780 -13.27546 -12.99162 -12.84563 -12.35674 -12.18802 -11.93131 -11.82302 -11.71926 -11.32136 -11.15445 -10.97324 -10.84524 -10.80500 -10.63012 -10.54667 -10.36456 -10.31867 -10.15745 -9.93827 -9.76292 -9.43717 -8.99248 -8.85676 -8.26557 -7.58573 -5.93064 -3.93171 3.34674 3.42348 3.46635 4.22187 4.52615 4.66808 4.74864 4.98817 5.16606 5.26637 5.33564 5.41618 5.43470 5.50394 5.53494 5.61481 5.68775 5.80983 5.91553 5.98393 6.00856 6.06207 6.10338 6.13491 6.16666 6.21640 6.29791 6.33386 6.40822 6.43953 6.49163 6.62031 6.66748 6.74477 6.91286 7.15662 7.28245 7.32723 7.63737 7.64648 7.79437 7.95885 8.08829 8.53723 9.13775 9.69802 11.18426 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.036273 B = 0.005120 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.743328 B = 5467.861176 C = 5628.145285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.178 4.178 3 C 0.095 3.905 4 H 0.071 0.929 5 C -0.073 4.073 6 H 0.052 0.948 7 C -0.121 4.121 8 C 0.026 3.974 9 C -0.509 4.509 10 H 0.055 0.945 11 C 0.055 3.945 12 N -0.897 5.897 13 Si 0.887 3.113 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.286 1.286 17 N -0.536 5.536 18 C 0.043 3.957 19 C -0.119 4.119 20 C -0.119 4.119 21 C -0.117 4.117 22 C -0.168 4.168 23 C 0.060 3.940 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.047 0.953 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.047 0.953 30 H 0.037 0.963 31 H 0.047 0.953 32 H 0.013 0.987 33 H 0.017 0.983 34 H 0.258 0.742 35 H 0.051 0.949 36 H 0.064 0.936 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.055 0.945 40 H 0.056 0.944 41 H 0.052 0.948 42 H 0.058 0.942 43 H 0.088 0.912 44 H 0.063 0.937 45 H 0.073 0.927 46 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.475 1.296 -15.844 18.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.216 4.216 3 C -0.013 4.013 4 H 0.090 0.910 5 C -0.092 4.092 6 H 0.070 0.930 7 C -0.179 4.179 8 C -0.011 4.011 9 C -0.547 4.547 10 H 0.074 0.926 11 C -0.145 4.145 12 N -0.538 5.538 13 Si 0.715 3.285 14 H -0.198 1.198 15 H -0.211 1.211 16 H -0.212 1.212 17 N -0.260 5.260 18 C -0.084 4.084 19 C -0.157 4.157 20 C -0.156 4.156 21 C -0.154 4.154 22 C -0.206 4.206 23 C -0.068 4.068 24 H 0.074 0.926 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.095 0.905 28 H 0.099 0.901 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.066 0.934 32 H 0.032 0.968 33 H 0.036 0.964 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.082 0.918 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.077 0.923 43 H 0.106 0.894 44 H 0.082 0.918 45 H 0.091 0.909 46 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -8.239 1.663 -15.693 17.802 hybrid contribution 0.402 -0.858 0.554 1.098 sum -7.837 0.804 -15.139 17.066 Atomic orbital electron populations 1.22178 0.97106 1.01148 1.01324 1.22735 0.95121 0.99577 1.04180 1.21850 0.98827 0.92697 0.87942 0.91041 1.21196 0.92138 0.96903 0.98928 0.92964 1.21549 1.00267 0.96339 0.99697 1.19216 0.96839 0.96298 0.88747 1.21297 0.92722 1.45076 0.95620 0.92636 1.25006 0.96670 0.95749 0.97116 1.69976 1.30422 1.47639 1.05721 0.86614 0.85531 0.77501 0.78829 1.19775 1.21142 1.21196 1.62052 1.21088 1.40603 1.02255 1.22141 0.90569 1.00174 0.95507 1.21419 1.01725 0.96926 0.95612 1.20588 0.98467 0.96204 1.00363 1.20563 0.98700 0.98397 0.97772 1.22479 1.01060 0.99391 0.97701 1.21827 0.96827 0.92189 0.95973 0.92634 0.92144 0.93423 0.90459 0.90123 0.93436 0.94381 0.93367 0.96824 0.96437 0.93259 0.93157 0.91796 0.90882 0.91752 0.92666 0.92558 0.92906 0.92340 0.89360 0.91830 0.90862 0.91784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.23 8.53 37.16 0.32 -1.91 16 2 C -0.18 -2.87 4.80 -26.73 -0.13 -3.00 16 3 C 0.09 1.63 1.44 -67.71 -0.10 1.53 16 4 H 0.07 1.31 7.62 -51.93 -0.40 0.91 16 5 C -0.07 -1.49 1.75 -90.62 -0.16 -1.65 16 6 H 0.05 1.10 6.72 -51.93 -0.35 0.75 16 7 C -0.12 -2.41 8.79 37.16 0.33 -2.09 16 8 C 0.03 0.67 4.34 -27.88 -0.12 0.55 16 9 C -0.51 -14.31 8.47 -34.44 -0.29 -14.60 16 10 H 0.06 1.54 7.06 -52.49 -0.37 1.17 16 11 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 12 N -0.90 -27.09 13.29 55.43 0.74 -26.36 16 13 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 14 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 15 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 16 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 17 N -0.54 -7.87 3.51 -227.92 -0.80 -8.67 16 18 C 0.04 0.54 4.79 -4.49 -0.02 0.52 16 19 C -0.12 -1.27 5.63 -27.32 -0.15 -1.42 16 20 C -0.12 -1.15 5.30 -29.41 -0.16 -1.31 16 21 C -0.12 -1.18 5.30 -29.42 -0.16 -1.33 16 22 C -0.17 -1.97 3.99 -27.32 -0.11 -2.08 16 23 C 0.06 0.80 4.53 -4.49 -0.02 0.78 16 24 H 0.05 0.79 7.98 -51.93 -0.41 0.38 16 25 H 0.06 0.76 3.89 -51.93 -0.20 0.55 16 26 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 27 H 0.08 1.17 3.91 -51.93 -0.20 0.96 16 28 H 0.08 1.53 5.88 -51.93 -0.31 1.23 16 29 H 0.05 0.86 7.29 -51.93 -0.38 0.48 16 30 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.05 1.02 7.10 -51.93 -0.37 0.65 16 32 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 33 H 0.02 0.47 6.10 -51.93 -0.32 0.15 16 34 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.05 0.63 2.87 -51.93 -0.15 0.48 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 37 H 0.07 0.83 7.08 -51.93 -0.37 0.46 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.56 7.52 -51.93 -0.39 0.17 16 41 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.58 7.52 -51.93 -0.39 0.19 16 43 H 0.09 1.10 3.04 -51.93 -0.16 0.94 16 44 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 45 H 0.07 1.11 6.01 -51.93 -0.31 0.79 16 46 H 0.06 0.83 6.58 -51.93 -0.34 0.49 16 LS Contribution 318.36 15.07 4.80 4.80 Total: -1.00 -28.88 318.36 -9.08 -37.97 By element: Atomic # 1 Polarization: 7.84 SS G_CDS: -7.93 Total: -0.09 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: -0.87 Total: -24.52 kcal Atomic # 7 Polarization: -34.96 SS G_CDS: -0.06 Total: -35.02 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -28.88 -9.08 -37.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259706213.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.274 kcal (2) G-P(sol) polarization free energy of solvation -28.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.967 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds