Wall clock time and date at job start Mon Mar 30 2020 06:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.46904 * 2 1 4 4 H 1.08996 * 109.47524 * 38.01621 * 3 2 1 5 5 C 1.52997 * 109.47136 * 158.01745 * 3 2 1 6 6 H 1.09003 * 109.47483 * 54.37971 * 5 3 2 7 7 C 1.53002 * 109.47538 * 174.37942 * 5 3 2 8 8 C 1.53006 * 109.47535 * 294.38270 * 5 3 2 9 9 C 1.50695 * 109.47435 * 174.99765 * 8 5 3 10 10 H 1.07997 * 119.99933 * 359.97438 * 9 8 5 11 11 C 1.37882 * 119.99629 * 179.97438 * 9 8 5 12 12 N 1.31513 * 120.00109 * 0.02562 * 11 9 8 13 13 Si 1.86794 * 119.99631 * 180.02562 * 11 9 8 14 14 H 1.48498 * 109.47512 * 359.97438 * 13 11 9 15 15 H 1.48509 * 109.47084 * 120.00306 * 13 11 9 16 16 H 1.48506 * 109.47109 * 240.00172 * 13 11 9 17 17 N 1.46902 * 109.47201 * 278.01452 * 3 2 1 18 18 C 1.48000 * 110.99416 * 81.09500 * 17 3 2 19 19 C 1.50450 * 112.82702 * 191.34363 * 18 17 3 20 20 C 1.54315 * 108.49434 * 93.73198 * 19 18 17 21 21 C 1.45875 * 112.18264 * 281.46844 * 20 19 18 22 22 C 1.54305 * 112.19102 * 61.12014 * 21 20 19 23 23 C 1.48002 * 110.99854 * 312.37946 * 17 3 2 24 24 H 1.08999 * 109.47644 * 306.56947 * 1 2 3 25 25 H 1.09003 * 109.47202 * 66.56629 * 1 2 3 26 26 H 1.09006 * 109.47232 * 186.56392 * 1 2 3 27 27 H 1.08992 * 109.47380 * 239.99942 * 2 1 3 28 28 H 1.09006 * 109.46781 * 119.99749 * 2 1 3 29 29 H 1.09000 * 109.46599 * 304.98103 * 7 5 3 30 30 H 1.08999 * 109.46698 * 64.97705 * 7 5 3 31 31 H 1.09001 * 109.47288 * 184.97682 * 7 5 3 32 32 H 1.09005 * 109.46638 * 295.00009 * 8 5 3 33 33 H 1.09003 * 109.46800 * 54.99246 * 8 5 3 34 34 H 0.97002 * 119.99825 * 180.02562 * 12 11 9 35 35 H 1.08991 * 108.81782 * 312.21014 * 18 17 3 36 36 H 1.09001 * 108.80951 * 70.48677 * 18 17 3 37 37 H 1.09004 * 109.63068 * 334.03179 * 19 18 17 38 38 H 1.09001 * 109.63656 * 213.43725 * 19 18 17 39 39 H 1.08999 * 108.93707 * 160.76722 * 20 19 18 40 40 H 1.08997 * 108.93439 * 42.16479 * 20 19 18 41 41 H 1.09001 * 108.93437 * 181.82119 * 21 20 19 42 42 H 1.09003 * 108.93921 * 300.42082 * 21 20 19 43 43 H 1.09001 * 109.63405 * 41.16466 * 22 21 20 44 44 H 1.08999 * 109.63172 * 161.76065 * 22 21 20 45 45 H 1.08993 * 108.81269 * 323.96818 * 23 17 3 46 46 H 1.09002 * 108.71823 * 205.63653 * 23 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.3978 2.0550 0.6329 5 6 3.4710 1.4775 0.5399 6 1 4.0921 0.7879 -0.0318 7 6 4.0308 2.8955 0.4098 8 6 3.4709 1.0624 2.0126 9 6 4.8906 0.9780 2.5109 10 1 5.7110 1.1979 1.8439 11 6 5.1421 0.6199 3.8184 12 7 4.1431 0.3516 4.6305 13 14 6.9018 0.5159 4.4363 14 1 7.8348 0.8625 3.3342 15 1 7.0885 1.4672 5.5613 16 1 7.1812 -0.8655 4.9045 17 7 2.0211 1.9686 -1.3715 18 6 0.6632 2.4222 -1.7468 19 6 0.5307 2.7134 -3.2169 20 6 -0.0005 1.4470 -3.9208 21 6 1.0465 0.4531 -4.1302 22 6 1.6626 -0.0332 -2.8017 23 6 2.6337 1.0082 -2.3163 24 1 -0.3634 0.6123 0.8253 25 1 -0.3634 0.4087 -0.9429 26 1 -0.3634 -1.0210 0.1175 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 3.9492 3.2246 -0.6261 30 1 3.4637 3.5702 1.0512 31 1 5.0781 2.9019 0.7118 32 1 2.9236 1.8011 2.5982 33 1 2.9911 0.0891 2.1157 34 1 4.3200 0.1000 5.5505 35 1 -0.0537 1.6472 -1.4760 36 1 0.4277 3.3271 -1.1867 37 1 1.5051 2.9789 -3.6269 38 1 -0.1689 3.5359 -3.3657 39 1 -0.4194 1.7286 -4.8868 40 1 -0.7888 1.0071 -3.3099 41 1 0.6226 -0.4016 -4.6574 42 1 1.8326 0.8915 -4.7451 43 1 0.8744 -0.1722 -2.0616 44 1 2.1865 -0.9751 -2.9641 45 1 3.4657 0.5088 -1.8199 46 1 3.0171 1.5588 -3.1754 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259706213.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:48 Heat of formation + Delta-G solvation = -19.933885 kcal Electronic energy + Delta-G solvation = -20625.159258 eV Core-core repulsion = 17934.794988 eV Total energy + Delta-G solvation = -2690.364270 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.24614 -37.71509 -35.32332 -33.58429 -33.29479 -32.68474 -29.11512 -27.99262 -26.49945 -25.61804 -24.51593 -22.23686 -21.51882 -20.79180 -20.01525 -18.51481 -17.33149 -16.84308 -16.42625 -16.05594 -15.38985 -15.13671 -14.70465 -14.57277 -14.10210 -14.03518 -13.88785 -13.63620 -13.23812 -13.22613 -13.04414 -12.96664 -12.72715 -12.59289 -12.33595 -12.18446 -12.10032 -11.87842 -11.58335 -11.46212 -11.40206 -11.28769 -11.10275 -10.91146 -10.89193 -10.70448 -10.47192 -8.78300 -8.15442 -6.23657 1.39116 1.39753 1.52672 2.42764 3.05714 3.17856 3.75922 3.88170 3.94156 4.13896 4.17137 4.25760 4.32757 4.41456 4.49955 4.54239 4.60027 4.67165 4.71384 4.80765 4.84732 4.93540 4.98805 5.05472 5.09503 5.13453 5.17211 5.20838 5.25767 5.31484 5.33864 5.36569 5.40267 5.48048 5.50378 5.52777 5.58245 5.60712 5.67000 5.90501 5.94062 6.29082 6.42316 6.50304 6.92930 7.44034 8.96529 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.036273 B = 0.005120 C = 0.004974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 771.743328 B = 5467.861176 C = 5628.145285 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.173 4.173 3 C 0.107 3.893 4 H 0.056 0.944 5 C -0.064 4.064 6 H 0.048 0.952 7 C -0.111 4.111 8 C 0.035 3.965 9 C -0.525 4.525 10 H 0.057 0.943 11 C -0.001 4.001 12 N -0.935 5.935 13 Si 0.957 3.043 14 H -0.263 1.263 15 H -0.280 1.280 16 H -0.279 1.279 17 N -0.541 5.541 18 C 0.042 3.958 19 C -0.114 4.114 20 C -0.117 4.117 21 C -0.113 4.113 22 C -0.167 4.167 23 C 0.061 3.939 24 H 0.046 0.954 25 H 0.080 0.920 26 H 0.057 0.943 27 H 0.091 0.909 28 H 0.044 0.956 29 H 0.069 0.931 30 H 0.029 0.971 31 H 0.032 0.968 32 H -0.017 1.017 33 H -0.004 1.004 34 H 0.261 0.739 35 H 0.054 0.946 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.072 0.928 40 H 0.056 0.944 41 H 0.064 0.936 42 H 0.062 0.938 43 H 0.082 0.918 44 H 0.067 0.933 45 H 0.053 0.947 46 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.599 1.441 -17.960 19.964 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.212 4.212 3 C -0.002 4.002 4 H 0.075 0.925 5 C -0.083 4.083 6 H 0.066 0.934 7 C -0.168 4.168 8 C -0.003 4.003 9 C -0.564 4.564 10 H 0.075 0.925 11 C -0.198 4.198 12 N -0.576 5.576 13 Si 0.783 3.217 14 H -0.187 1.187 15 H -0.206 1.206 16 H -0.205 1.205 17 N -0.265 5.265 18 C -0.084 4.084 19 C -0.152 4.152 20 C -0.154 4.154 21 C -0.150 4.150 22 C -0.205 4.205 23 C -0.067 4.067 24 H 0.065 0.935 25 H 0.098 0.902 26 H 0.076 0.924 27 H 0.109 0.891 28 H 0.062 0.938 29 H 0.088 0.912 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.001 0.999 33 H 0.015 0.985 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.086 0.914 38 H 0.098 0.902 39 H 0.091 0.909 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.080 0.920 43 H 0.100 0.900 44 H 0.085 0.915 45 H 0.071 0.929 46 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -8.364 1.812 -17.829 19.777 hybrid contribution 0.424 -0.894 1.201 1.556 sum -7.940 0.918 -16.628 18.449 Atomic orbital electron populations 1.22112 0.95013 1.01868 1.02046 1.22677 0.96976 0.98567 1.02961 1.21513 0.95983 0.93265 0.89445 0.92522 1.21005 0.94678 0.97007 0.95608 0.93406 1.21446 0.98919 0.95654 1.00787 1.19074 0.95171 0.94307 0.91713 1.21676 0.93816 1.44824 0.96047 0.92503 1.25902 1.01187 0.95313 0.97395 1.70108 1.32824 1.48527 1.06141 0.85510 0.80157 0.77699 0.78375 1.18709 1.20577 1.20518 1.61969 1.22781 1.40774 1.00979 1.22218 0.89149 0.99866 0.97173 1.21397 1.01967 0.98081 0.93753 1.20578 0.98254 0.95472 1.01140 1.20529 0.98894 0.99001 0.96578 1.22413 1.00447 0.98985 0.98655 1.21843 0.96656 0.92496 0.95662 0.93522 0.90162 0.92364 0.89131 0.93768 0.91171 0.95216 0.94924 0.99899 0.98547 0.93051 0.92836 0.92374 0.91417 0.90215 0.90930 0.92527 0.91682 0.91960 0.90010 0.91470 0.92892 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.15 8.53 71.98 0.61 -3.54 16 2 C -0.17 -5.69 4.80 30.59 0.15 -5.54 16 3 C 0.11 3.71 1.44 44.91 0.06 3.78 16 4 H 0.06 2.14 7.62 -2.39 -0.02 2.12 16 5 C -0.06 -2.70 1.75 -10.79 -0.02 -2.72 16 6 H 0.05 2.06 6.72 -2.39 -0.02 2.04 16 7 C -0.11 -4.46 8.79 71.98 0.63 -3.82 16 8 C 0.03 1.86 4.34 29.85 0.13 1.99 16 9 C -0.53 -30.35 8.47 25.60 0.22 -30.13 16 10 H 0.06 3.20 7.06 -2.91 -0.02 3.18 16 11 C 0.00 -0.06 5.46 84.66 0.46 0.41 16 12 N -0.93 -57.94 13.29 21.45 0.28 -57.65 16 13 Si 0.96 45.34 29.54 68.60 2.03 47.37 16 14 H -0.26 -11.92 7.11 99.48 0.71 -11.22 16 15 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 16 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 17 N -0.54 -15.33 3.51 -875.01 -3.07 -18.40 16 18 C 0.04 0.99 4.79 85.27 0.41 1.40 16 19 C -0.11 -2.09 5.63 30.22 0.17 -1.92 16 20 C -0.12 -1.86 5.30 28.86 0.15 -1.71 16 21 C -0.11 -1.90 5.30 28.85 0.15 -1.75 16 22 C -0.17 -3.55 3.99 30.21 0.12 -3.43 16 23 C 0.06 1.55 4.53 85.26 0.39 1.94 16 24 H 0.05 1.33 7.98 -2.39 -0.02 1.31 16 25 H 0.08 1.85 3.89 -2.39 -0.01 1.84 16 26 H 0.06 1.44 8.14 -2.38 -0.02 1.42 16 27 H 0.09 2.71 3.91 -2.39 -0.01 2.70 16 28 H 0.04 1.77 5.88 -2.38 -0.01 1.75 16 29 H 0.07 2.48 7.29 -2.39 -0.02 2.46 16 30 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.03 1.38 7.10 -2.39 -0.02 1.36 16 32 H -0.02 -1.03 8.14 -2.38 -0.02 -1.04 16 33 H 0.00 -0.21 6.10 -2.39 -0.01 -0.23 16 34 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 35 H 0.05 1.23 2.87 -2.39 -0.01 1.22 16 36 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 37 H 0.07 1.34 7.08 -2.38 -0.02 1.32 16 38 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 39 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.06 0.92 7.52 -2.39 -0.02 0.90 16 41 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.06 1.03 7.52 -2.39 -0.02 1.01 16 43 H 0.08 1.85 3.04 -2.39 -0.01 1.85 16 44 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.05 1.57 6.01 -2.39 -0.01 1.55 16 46 H 0.07 1.77 6.58 -2.39 -0.02 1.75 16 Total: -1.00 -63.17 318.36 3.82 -59.35 By element: Atomic # 1 Polarization: 13.44 SS G_CDS: 0.94 Total: 14.39 kcal Atomic # 6 Polarization: -48.69 SS G_CDS: 3.64 Total: -45.05 kcal Atomic # 7 Polarization: -73.27 SS G_CDS: -2.79 Total: -76.06 kcal Atomic # 14 Polarization: 45.34 SS G_CDS: 2.03 Total: 47.37 kcal Total: -63.17 3.82 -59.35 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259706213.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.418 kcal (2) G-P(sol) polarization free energy of solvation -63.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds