Wall clock time and date at job start Mon Mar 30 2020 06:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46985 * 2 1 4 4 H 1.09000 * 109.47136 * 324.78779 * 3 2 1 5 5 C 1.52995 * 109.47110 * 84.78968 * 3 2 1 6 6 H 1.09002 * 109.46845 * 181.01937 * 5 3 2 7 7 C 1.53003 * 109.47113 * 61.02477 * 5 3 2 8 8 C 1.52999 * 109.47294 * 301.01892 * 5 3 2 9 9 C 1.50698 * 109.46975 * 187.09888 * 8 5 3 10 10 H 1.07998 * 120.00324 * 0.02562 * 9 8 5 11 11 C 1.37882 * 119.99804 * 180.27921 * 9 8 5 12 12 N 1.31514 * 119.99745 * 359.72345 * 11 9 8 13 13 Si 1.86804 * 120.00034 * 179.72592 * 11 9 8 14 14 H 1.48496 * 109.46730 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.46986 * 119.99736 * 13 11 9 16 16 H 1.48502 * 109.46835 * 239.99738 * 13 11 9 17 17 N 1.46906 * 109.46685 * 204.79024 * 3 2 1 18 18 C 1.48000 * 110.99525 * 195.80255 * 17 3 2 19 19 C 1.50445 * 112.82496 * 191.34777 * 18 17 3 20 20 C 1.54304 * 108.50090 * 93.73173 * 19 18 17 21 21 C 1.45881 * 112.18363 * 281.46196 * 20 19 18 22 22 C 1.54312 * 112.18438 * 61.12056 * 21 20 19 23 23 C 1.47997 * 110.99827 * 67.08809 * 17 3 2 24 24 H 1.08999 * 109.47580 * 306.63066 * 1 2 3 25 25 H 1.09000 * 109.47258 * 66.62995 * 1 2 3 26 26 H 1.09004 * 109.47194 * 186.63386 * 1 2 3 27 27 H 1.08997 * 109.47043 * 239.99464 * 2 1 3 28 28 H 1.08995 * 109.46814 * 119.99638 * 2 1 3 29 29 H 1.08996 * 109.47331 * 60.00028 * 7 5 3 30 30 H 1.09002 * 109.46810 * 180.02562 * 7 5 3 31 31 H 1.09002 * 109.46824 * 299.99472 * 7 5 3 32 32 H 1.09004 * 109.46515 * 67.10209 * 8 5 3 33 33 H 1.08997 * 109.47494 * 307.10271 * 8 5 3 34 34 H 0.97005 * 119.99581 * 179.97438 * 12 11 9 35 35 H 1.08995 * 108.81605 * 312.21237 * 18 17 3 36 36 H 1.08998 * 108.81081 * 70.48290 * 18 17 3 37 37 H 1.09002 * 109.63257 * 334.02309 * 19 18 17 38 38 H 1.09001 * 109.62827 * 213.43659 * 19 18 17 39 39 H 1.09004 * 108.93912 * 160.76727 * 20 19 18 40 40 H 1.08997 * 108.94357 * 42.15639 * 20 19 18 41 41 H 1.09002 * 108.93799 * 300.42784 * 21 20 19 42 42 H 1.09005 * 108.93948 * 181.82121 * 21 20 19 43 43 H 1.09000 * 109.63007 * 161.76037 * 22 21 20 44 44 H 1.08999 * 109.62877 * 41.17107 * 22 21 20 45 45 H 1.09004 * 108.80771 * 205.69745 * 23 17 3 46 46 H 1.09001 * 108.81537 * 323.97259 * 23 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3695 2.0649 -0.5926 5 6 2.0865 1.9670 1.4365 6 1 2.4326 3.0006 1.4348 7 6 3.0473 1.1088 2.2619 8 6 0.6865 1.8989 2.0499 9 6 0.6951 2.5737 3.3973 10 1 1.6077 3.0080 3.7779 11 6 -0.4610 2.6319 4.1465 12 7 -1.5724 2.1034 3.6828 13 14 -0.4485 3.4616 5.8202 14 1 0.9157 3.9716 6.1096 15 1 -1.4105 4.5929 5.8190 16 1 -0.8408 2.4793 6.8625 17 7 3.3887 1.4850 -0.5808 18 6 4.0628 2.7636 -0.2630 19 6 5.3263 2.9694 -1.0534 20 6 4.9854 3.7849 -2.3181 21 6 4.3750 2.9617 -3.3564 22 6 3.0449 2.3312 -2.8932 23 6 3.3569 1.1458 -2.0210 24 1 -0.3634 0.6131 0.8247 25 1 -0.3634 0.4076 -0.9434 26 1 -0.3634 -1.0208 0.1187 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 4.0447 1.1574 1.8250 30 1 3.0800 1.4823 3.2854 31 1 2.7012 0.0752 2.2636 32 1 0.3918 0.8561 2.1676 33 1 -0.0224 2.4050 1.3946 34 1 -2.3856 2.1440 4.2101 35 1 3.3779 3.5844 -0.4753 36 1 4.3065 2.7780 0.7993 37 1 5.7398 2.0028 -1.3412 38 1 6.0510 3.5157 -0.4496 39 1 5.9006 4.2283 -2.7106 40 1 4.2946 4.5838 -2.0485 41 1 5.0677 2.1657 -3.6295 42 1 4.1865 3.5808 -4.2335 43 1 2.4717 2.0063 -3.7615 44 1 2.4710 3.0632 -2.3249 45 1 4.3282 0.7436 -2.3088 46 1 2.5990 0.3797 -2.1851 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259706214.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:52 Heat of formation + Delta-G solvation = -15.741115 kcal Electronic energy + Delta-G solvation = -20548.613378 eV Core-core repulsion = 17858.430921 eV Total energy + Delta-G solvation = -2690.182458 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.65000 -36.87791 -33.46598 -32.30573 -32.08848 -30.75339 -27.50653 -26.47249 -24.87389 -24.33362 -23.25847 -21.09365 -20.18887 -19.80317 -17.81883 -16.74457 -16.07719 -15.53355 -14.71566 -14.52936 -14.31914 -13.78582 -13.56414 -13.23006 -13.04483 -12.53346 -12.17992 -12.17391 -12.03645 -12.01419 -11.43397 -11.39492 -10.97578 -10.94568 -10.88332 -10.72988 -10.66359 -10.51755 -10.35119 -10.22507 -10.16798 -9.97057 -9.77033 -9.47597 -9.01711 -8.59382 -8.28593 -7.71365 -5.95557 -3.95742 3.33076 3.40971 3.44837 4.19042 4.50233 4.69223 4.78204 4.99277 5.21078 5.32064 5.40608 5.48976 5.55102 5.56601 5.61926 5.72098 5.79239 5.91580 6.00561 6.04973 6.07801 6.09114 6.15904 6.17742 6.19861 6.29011 6.34744 6.36534 6.41248 6.48913 6.60466 6.65144 6.71641 6.89827 7.07314 7.13543 7.24530 7.30126 7.62040 7.64421 7.73032 7.91214 8.04818 8.51606 9.10349 9.67380 11.15666 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.027187 B = 0.005651 C = 0.005130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.648554 B = 4953.934505 C = 5457.192432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.110 4.110 3 C 0.093 3.907 4 H 0.033 0.967 5 C -0.082 4.082 6 H 0.054 0.946 7 C -0.128 4.128 8 C 0.024 3.976 9 C -0.512 4.512 10 H 0.054 0.946 11 C 0.056 3.944 12 N -0.896 5.896 13 Si 0.887 3.113 14 H -0.274 1.274 15 H -0.286 1.286 16 H -0.285 1.285 17 N -0.541 5.541 18 C 0.060 3.940 19 C -0.119 4.119 20 C -0.121 4.121 21 C -0.114 4.114 22 C -0.149 4.149 23 C 0.055 3.945 24 H 0.101 0.899 25 H 0.037 0.963 26 H 0.043 0.957 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.043 0.957 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.032 0.968 33 H 0.013 0.987 34 H 0.258 0.742 35 H 0.031 0.969 36 H 0.079 0.921 37 H 0.072 0.928 38 H 0.066 0.934 39 H 0.055 0.945 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.053 0.947 43 H 0.062 0.938 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.857 -0.694 -12.295 16.417 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.148 4.148 3 C -0.015 4.015 4 H 0.051 0.949 5 C -0.101 4.101 6 H 0.072 0.928 7 C -0.185 4.185 8 C -0.013 4.013 9 C -0.550 4.550 10 H 0.073 0.927 11 C -0.144 4.144 12 N -0.536 5.536 13 Si 0.715 3.285 14 H -0.198 1.198 15 H -0.212 1.212 16 H -0.211 1.211 17 N -0.266 5.266 18 C -0.067 4.067 19 C -0.157 4.157 20 C -0.159 4.159 21 C -0.151 4.151 22 C -0.188 4.188 23 C -0.072 4.072 24 H 0.120 0.880 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.090 0.910 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.050 0.950 33 H 0.031 0.969 34 H 0.068 0.932 35 H 0.049 0.951 36 H 0.097 0.903 37 H 0.090 0.910 38 H 0.085 0.915 39 H 0.074 0.926 40 H 0.077 0.923 41 H 0.077 0.923 42 H 0.072 0.928 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 10.957 -1.056 -12.042 16.315 hybrid contribution -0.678 1.151 0.464 1.414 sum 10.280 0.095 -11.578 15.483 Atomic orbital electron populations 1.22354 0.95725 1.02029 1.03369 1.21612 0.95615 0.95957 1.01601 1.21791 0.86980 0.96393 0.96289 0.94941 1.21328 0.99499 0.97805 0.91441 0.92806 1.21727 0.97770 0.99429 0.99577 1.19385 0.89559 0.97577 0.94780 1.21322 0.95236 1.35860 1.02608 0.92748 1.24989 0.95741 0.95779 0.97921 1.69962 1.00132 1.45733 1.37785 0.86620 0.77949 0.79276 0.84661 1.19829 1.21192 1.21121 1.61928 1.19986 1.32860 1.11835 1.21805 0.94298 0.90124 1.00445 1.21445 0.97672 1.00492 0.96115 1.20609 1.00322 0.98699 0.96252 1.20523 0.96916 0.99527 0.98154 1.21926 0.97307 0.99505 1.00111 1.21912 1.01590 0.96652 0.87078 0.88021 0.94355 0.93808 0.93115 0.91046 0.93838 0.92966 0.93473 0.94996 0.96900 0.93206 0.95124 0.90298 0.90973 0.91549 0.92598 0.92337 0.92275 0.92830 0.91904 0.91663 0.91619 0.91216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.20 9.36 37.16 0.35 -2.85 16 2 C -0.11 -1.88 5.10 -26.73 -0.14 -2.02 16 3 C 0.09 1.63 1.49 -67.71 -0.10 1.53 16 4 H 0.03 0.61 7.41 -51.93 -0.38 0.23 16 5 C -0.08 -1.67 1.58 -90.62 -0.14 -1.81 16 6 H 0.05 1.13 6.52 -51.93 -0.34 0.79 16 7 C -0.13 -2.47 8.30 37.16 0.31 -2.16 16 8 C 0.02 0.60 2.71 -27.88 -0.08 0.52 16 9 C -0.51 -14.17 8.42 -34.44 -0.29 -14.46 16 10 H 0.05 1.49 7.20 -52.49 -0.38 1.11 16 11 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 12 N -0.90 -26.54 13.29 55.43 0.74 -25.81 16 13 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 14 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 15 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 16 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 17 N -0.54 -8.16 3.94 -227.92 -0.90 -9.05 16 18 C 0.06 0.87 3.53 -4.49 -0.02 0.85 16 19 C -0.12 -1.39 5.63 -27.32 -0.15 -1.54 16 20 C -0.12 -1.29 5.30 -29.42 -0.16 -1.44 16 21 C -0.11 -1.17 5.30 -29.41 -0.16 -1.33 16 22 C -0.15 -1.78 5.54 -27.32 -0.15 -1.93 16 23 C 0.06 0.72 4.92 -4.50 -0.02 0.69 16 24 H 0.10 2.20 3.97 -51.93 -0.21 2.00 16 25 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 26 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.05 0.78 5.96 -51.93 -0.31 0.47 16 28 H 0.07 1.29 5.64 -51.93 -0.29 1.00 16 29 H 0.04 0.75 6.27 -51.93 -0.33 0.43 16 30 H 0.05 1.08 7.10 -51.93 -0.37 0.71 16 31 H 0.05 0.91 6.05 -51.93 -0.31 0.59 16 32 H 0.03 0.84 5.83 -51.93 -0.30 0.53 16 33 H 0.01 0.34 7.64 -51.93 -0.40 -0.05 16 34 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 35 H 0.03 0.48 6.34 -51.93 -0.33 0.15 16 36 H 0.08 1.23 5.58 -51.93 -0.29 0.94 16 37 H 0.07 0.85 7.08 -51.93 -0.37 0.48 16 38 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.06 0.67 7.52 -51.93 -0.39 0.28 16 41 H 0.06 0.58 7.52 -51.93 -0.39 0.19 16 42 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.06 0.90 6.61 -51.93 -0.34 0.56 16 45 H 0.07 0.79 6.59 -51.93 -0.34 0.45 16 46 H 0.07 0.92 5.86 -51.93 -0.30 0.61 16 LS Contribution 320.58 15.07 4.83 4.83 Total: -1.00 -28.19 320.58 -9.24 -37.43 By element: Atomic # 1 Polarization: 8.44 SS G_CDS: -8.05 Total: 0.40 kcal Atomic # 6 Polarization: -23.60 SS G_CDS: -0.84 Total: -24.45 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: -0.16 Total: -34.86 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.19 -9.24 -37.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259706214.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.691 kcal (2) G-P(sol) polarization free energy of solvation -28.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.500 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.432 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds