Wall clock time and date at job start Mon Mar 30 2020 06:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.46985 * 2 1 4 4 H 1.09000 * 109.47136 * 324.78779 * 3 2 1 5 5 C 1.52995 * 109.47110 * 84.78968 * 3 2 1 6 6 H 1.09002 * 109.46845 * 181.01937 * 5 3 2 7 7 C 1.53003 * 109.47113 * 61.02477 * 5 3 2 8 8 C 1.52999 * 109.47294 * 301.01892 * 5 3 2 9 9 C 1.50698 * 109.46975 * 187.09888 * 8 5 3 10 10 H 1.07998 * 120.00324 * 0.02562 * 9 8 5 11 11 C 1.37882 * 119.99804 * 180.27921 * 9 8 5 12 12 N 1.31514 * 119.99745 * 359.72345 * 11 9 8 13 13 Si 1.86804 * 120.00034 * 179.72592 * 11 9 8 14 14 H 1.48496 * 109.46730 * 359.97438 * 13 11 9 15 15 H 1.48497 * 109.46986 * 119.99736 * 13 11 9 16 16 H 1.48502 * 109.46835 * 239.99738 * 13 11 9 17 17 N 1.46906 * 109.46685 * 204.79024 * 3 2 1 18 18 C 1.48000 * 110.99525 * 195.80255 * 17 3 2 19 19 C 1.50445 * 112.82496 * 191.34777 * 18 17 3 20 20 C 1.54304 * 108.50090 * 93.73173 * 19 18 17 21 21 C 1.45881 * 112.18363 * 281.46196 * 20 19 18 22 22 C 1.54312 * 112.18438 * 61.12056 * 21 20 19 23 23 C 1.47997 * 110.99827 * 67.08809 * 17 3 2 24 24 H 1.08999 * 109.47580 * 306.63066 * 1 2 3 25 25 H 1.09000 * 109.47258 * 66.62995 * 1 2 3 26 26 H 1.09004 * 109.47194 * 186.63386 * 1 2 3 27 27 H 1.08997 * 109.47043 * 239.99464 * 2 1 3 28 28 H 1.08995 * 109.46814 * 119.99638 * 2 1 3 29 29 H 1.08996 * 109.47331 * 60.00028 * 7 5 3 30 30 H 1.09002 * 109.46810 * 180.02562 * 7 5 3 31 31 H 1.09002 * 109.46824 * 299.99472 * 7 5 3 32 32 H 1.09004 * 109.46515 * 67.10209 * 8 5 3 33 33 H 1.08997 * 109.47494 * 307.10271 * 8 5 3 34 34 H 0.97005 * 119.99581 * 179.97438 * 12 11 9 35 35 H 1.08995 * 108.81605 * 312.21237 * 18 17 3 36 36 H 1.08998 * 108.81081 * 70.48290 * 18 17 3 37 37 H 1.09002 * 109.63257 * 334.02309 * 19 18 17 38 38 H 1.09001 * 109.62827 * 213.43659 * 19 18 17 39 39 H 1.09004 * 108.93912 * 160.76727 * 20 19 18 40 40 H 1.08997 * 108.94357 * 42.15639 * 20 19 18 41 41 H 1.09002 * 108.93799 * 300.42784 * 21 20 19 42 42 H 1.09005 * 108.93948 * 181.82121 * 21 20 19 43 43 H 1.09000 * 109.63007 * 161.76037 * 22 21 20 44 44 H 1.08999 * 109.62877 * 41.17107 * 22 21 20 45 45 H 1.09004 * 108.80771 * 205.69745 * 23 17 3 46 46 H 1.09001 * 108.81537 * 323.97259 * 23 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.3695 2.0649 -0.5926 5 6 2.0865 1.9670 1.4365 6 1 2.4326 3.0006 1.4348 7 6 3.0473 1.1088 2.2619 8 6 0.6865 1.8989 2.0499 9 6 0.6951 2.5737 3.3973 10 1 1.6077 3.0080 3.7779 11 6 -0.4610 2.6319 4.1465 12 7 -1.5724 2.1034 3.6828 13 14 -0.4485 3.4616 5.8202 14 1 0.9157 3.9716 6.1096 15 1 -1.4105 4.5929 5.8190 16 1 -0.8408 2.4793 6.8625 17 7 3.3887 1.4850 -0.5808 18 6 4.0628 2.7636 -0.2630 19 6 5.3263 2.9694 -1.0534 20 6 4.9854 3.7849 -2.3181 21 6 4.3750 2.9617 -3.3564 22 6 3.0449 2.3312 -2.8932 23 6 3.3569 1.1458 -2.0210 24 1 -0.3634 0.6131 0.8247 25 1 -0.3634 0.4076 -0.9434 26 1 -0.3634 -1.0208 0.1187 27 1 1.8933 -0.5139 -0.8899 28 1 1.8933 -0.5138 0.8900 29 1 4.0447 1.1574 1.8250 30 1 3.0800 1.4823 3.2854 31 1 2.7012 0.0752 2.2636 32 1 0.3918 0.8561 2.1676 33 1 -0.0224 2.4050 1.3946 34 1 -2.3856 2.1440 4.2101 35 1 3.3779 3.5844 -0.4753 36 1 4.3065 2.7780 0.7993 37 1 5.7398 2.0028 -1.3412 38 1 6.0510 3.5157 -0.4496 39 1 5.9006 4.2283 -2.7106 40 1 4.2946 4.5838 -2.0485 41 1 5.0677 2.1657 -3.6295 42 1 4.1865 3.5808 -4.2335 43 1 2.4717 2.0063 -3.7615 44 1 2.4710 3.0632 -2.3249 45 1 4.3282 0.7436 -2.3088 46 1 2.5990 0.3797 -2.1851 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259706214.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:52 Heat of formation + Delta-G solvation = -30.579988 kcal Electronic energy + Delta-G solvation = -20549.256840 eV Core-core repulsion = 17858.430921 eV Total energy + Delta-G solvation = -2690.825919 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.86887 -38.20895 -35.19245 -33.69141 -33.44518 -32.22613 -29.22541 -27.91711 -26.11681 -25.74518 -24.92491 -22.50420 -21.28017 -21.02718 -19.29747 -18.68362 -17.31081 -16.83991 -16.48741 -16.05195 -15.55519 -15.00703 -14.72539 -14.54426 -14.25633 -14.21805 -13.75653 -13.68820 -13.47909 -13.11647 -13.04546 -12.78775 -12.70816 -12.61379 -12.31371 -12.20916 -12.11171 -11.74382 -11.69291 -11.54129 -11.47394 -11.36398 -11.20043 -10.97326 -10.82266 -10.52499 -10.38410 -8.96603 -8.14346 -6.22165 1.38703 1.39841 1.51941 2.42941 2.98021 3.18899 3.79704 3.88253 3.94752 4.06650 4.18778 4.26013 4.40321 4.42581 4.53692 4.56796 4.60263 4.63762 4.68381 4.79034 4.83925 4.90632 4.96304 5.01856 5.06464 5.11165 5.16281 5.19852 5.25883 5.28847 5.32511 5.38519 5.40766 5.46145 5.49204 5.54051 5.59309 5.60403 5.64643 5.89224 5.96339 6.30034 6.37661 6.45739 6.93852 7.45160 8.96937 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.027187 B = 0.005651 C = 0.005130 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1029.648554 B = 4953.934505 C = 5457.192432 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.104 4.104 3 C 0.105 3.895 4 H 0.014 0.986 5 C -0.074 4.074 6 H 0.043 0.957 7 C -0.117 4.117 8 C 0.037 3.963 9 C -0.529 4.529 10 H 0.054 0.946 11 C 0.002 3.998 12 N -0.931 5.931 13 Si 0.954 3.046 14 H -0.265 1.265 15 H -0.281 1.281 16 H -0.279 1.279 17 N -0.540 5.540 18 C 0.062 3.938 19 C -0.113 4.113 20 C -0.119 4.119 21 C -0.111 4.111 22 C -0.148 4.148 23 C 0.054 3.946 24 H 0.060 0.940 25 H 0.048 0.952 26 H 0.055 0.945 27 H 0.076 0.924 28 H 0.062 0.938 29 H 0.065 0.935 30 H 0.034 0.966 31 H 0.046 0.954 32 H 0.017 0.983 33 H -0.019 1.019 34 H 0.261 0.739 35 H 0.013 0.987 36 H 0.064 0.936 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.075 0.925 40 H 0.044 0.956 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.039 0.961 45 H 0.084 0.916 46 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.818 -0.926 -13.225 18.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.142 4.142 3 C -0.004 4.004 4 H 0.032 0.968 5 C -0.093 4.093 6 H 0.061 0.939 7 C -0.174 4.174 8 C 0.000 4.000 9 C -0.568 4.568 10 H 0.072 0.928 11 C -0.195 4.195 12 N -0.571 5.571 13 Si 0.780 3.220 14 H -0.189 1.189 15 H -0.207 1.207 16 H -0.205 1.205 17 N -0.265 5.265 18 C -0.065 4.065 19 C -0.151 4.151 20 C -0.157 4.157 21 C -0.148 4.148 22 C -0.187 4.187 23 C -0.073 4.073 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.075 0.925 27 H 0.095 0.905 28 H 0.081 0.919 29 H 0.084 0.916 30 H 0.053 0.947 31 H 0.065 0.935 32 H 0.035 0.965 33 H -0.001 1.001 34 H 0.069 0.931 35 H 0.031 0.969 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.096 0.904 39 H 0.094 0.906 40 H 0.063 0.937 41 H 0.091 0.909 42 H 0.083 0.917 43 H 0.093 0.907 44 H 0.058 0.942 45 H 0.102 0.898 46 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 12.935 -1.285 -12.981 18.371 hybrid contribution -1.311 1.229 0.715 1.934 sum 11.624 -0.056 -12.266 16.899 Atomic orbital electron populations 1.22234 0.96648 1.01945 1.02149 1.21558 0.94704 0.95557 1.02339 1.21508 0.88392 0.96260 0.94209 0.96762 1.21146 0.96873 0.97790 0.93457 0.93888 1.21609 0.98548 0.98820 0.98382 1.19207 0.91540 0.95797 0.93496 1.21720 0.95288 1.35906 1.03848 0.92826 1.25838 0.95384 0.96449 1.01835 1.70093 1.00758 1.46950 1.39343 0.85563 0.78281 0.78270 0.79936 1.18916 1.20720 1.20489 1.61930 1.17893 1.33131 1.13564 1.21818 0.95269 0.89207 1.00230 1.21412 0.96122 1.01192 0.96352 1.20595 1.00935 0.98267 0.95892 1.20511 0.96021 0.99987 0.98295 1.21891 0.98255 0.98514 0.99995 1.22011 1.02618 0.97050 0.85578 0.92121 0.93305 0.92546 0.90541 0.91923 0.91577 0.94719 0.93515 0.96490 1.00066 0.93064 0.96915 0.91757 0.90321 0.90443 0.90628 0.93727 0.90852 0.91749 0.90727 0.94223 0.89753 0.91272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.30 9.36 71.98 0.67 -5.63 16 2 C -0.10 -3.50 5.10 30.59 0.16 -3.34 16 3 C 0.10 3.70 1.49 44.91 0.07 3.77 16 4 H 0.01 0.56 7.41 -2.39 -0.02 0.54 16 5 C -0.07 -3.09 1.58 -10.79 -0.02 -3.10 16 6 H 0.04 1.87 6.52 -2.39 -0.02 1.86 16 7 C -0.12 -4.50 8.30 71.98 0.60 -3.90 16 8 C 0.04 1.91 2.71 29.85 0.08 2.00 16 9 C -0.53 -30.17 8.42 25.60 0.22 -29.95 16 10 H 0.05 2.99 7.20 -2.91 -0.02 2.97 16 11 C 0.00 0.14 5.46 84.66 0.46 0.60 16 12 N -0.93 -56.64 13.29 21.45 0.28 -56.36 16 13 Si 0.95 44.98 29.54 68.60 2.03 47.00 16 14 H -0.27 -12.01 7.11 99.48 0.71 -11.31 16 15 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 16 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 17 N -0.54 -15.65 3.94 -875.00 -3.45 -19.10 16 18 C 0.06 1.74 3.53 85.26 0.30 2.04 16 19 C -0.11 -2.37 5.63 30.21 0.17 -2.20 16 20 C -0.12 -2.25 5.30 28.85 0.15 -2.10 16 21 C -0.11 -1.97 5.30 28.86 0.15 -1.81 16 22 C -0.15 -3.24 5.54 30.21 0.17 -3.08 16 23 C 0.05 1.28 4.92 85.26 0.42 1.70 16 24 H 0.06 2.76 3.97 -2.39 -0.01 2.75 16 25 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 26 H 0.06 1.87 8.14 -2.38 -0.02 1.85 16 27 H 0.08 2.19 5.96 -2.39 -0.01 2.17 16 28 H 0.06 2.23 5.64 -2.39 -0.01 2.22 16 29 H 0.07 2.23 6.27 -2.39 -0.01 2.22 16 30 H 0.03 1.43 7.10 -2.39 -0.02 1.41 16 31 H 0.05 1.79 6.05 -2.39 -0.01 1.78 16 32 H 0.02 0.93 5.83 -2.39 -0.01 0.92 16 33 H -0.02 -1.09 7.64 -2.39 -0.02 -1.11 16 34 H 0.26 14.96 8.31 -92.70 -0.77 14.19 16 35 H 0.01 0.40 6.34 -2.39 -0.02 0.38 16 36 H 0.06 1.97 5.58 -2.39 -0.01 1.96 16 37 H 0.08 1.58 7.08 -2.39 -0.02 1.56 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 40 H 0.04 0.97 7.52 -2.39 -0.02 0.95 16 41 H 0.07 1.13 7.52 -2.39 -0.02 1.12 16 42 H 0.06 1.03 8.14 -2.38 -0.02 1.01 16 43 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.04 1.08 6.61 -2.39 -0.02 1.06 16 45 H 0.08 1.73 6.59 -2.39 -0.02 1.71 16 46 H 0.07 1.64 5.86 -2.39 -0.01 1.63 16 Total: -1.00 -61.80 320.58 3.40 -58.41 By element: Atomic # 1 Polarization: 14.12 SS G_CDS: 0.94 Total: 15.06 kcal Atomic # 6 Polarization: -48.61 SS G_CDS: 3.60 Total: -45.01 kcal Atomic # 7 Polarization: -72.29 SS G_CDS: -3.17 Total: -75.45 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -61.80 3.40 -58.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259706214.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.827 kcal (2) G-P(sol) polarization free energy of solvation -61.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds