Wall clock time and date at job start Mon Mar 30 2020 06:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47412 * 2 1 4 4 H 1.09003 * 109.46704 * 315.69329 * 3 2 1 5 5 C 1.52997 * 109.47105 * 195.69520 * 3 2 1 6 6 H 1.09003 * 109.46935 * 181.41188 * 5 3 2 7 7 C 1.52995 * 109.47092 * 301.41284 * 5 3 2 8 8 C 1.53001 * 109.47139 * 61.41127 * 5 3 2 9 9 C 1.50707 * 109.46820 * 174.99985 * 8 5 3 10 10 H 1.07998 * 120.00146 * 0.02562 * 9 8 5 11 11 C 1.37878 * 119.99689 * 180.02562 * 9 8 5 12 12 N 1.31513 * 120.00158 * 359.97438 * 11 9 8 13 13 Si 1.86803 * 119.99878 * 180.02562 * 11 9 8 14 14 H 1.48491 * 109.47144 * 59.99843 * 13 11 9 15 15 H 1.48502 * 109.47050 * 179.97438 * 13 11 9 16 16 H 1.48498 * 109.47015 * 299.99460 * 13 11 9 17 17 N 1.46891 * 109.47324 * 75.69326 * 3 2 1 18 18 C 1.48002 * 110.99984 * 287.86820 * 17 3 2 19 19 C 1.50447 * 112.82817 * 191.34542 * 18 17 3 20 20 C 1.54313 * 108.50284 * 93.72612 * 19 18 17 21 21 C 1.45872 * 112.18517 * 281.46997 * 20 19 18 22 22 C 1.54309 * 112.18831 * 61.11587 * 21 20 19 23 23 C 1.48002 * 111.00473 * 159.15021 * 17 3 2 24 24 H 1.08997 * 109.47304 * 268.76705 * 1 2 3 25 25 H 1.09005 * 109.46970 * 28.77078 * 1 2 3 26 26 H 1.09000 * 109.47297 * 148.76264 * 1 2 3 27 27 H 1.09005 * 109.46754 * 239.99317 * 2 1 3 28 28 H 1.08998 * 109.46803 * 120.00204 * 2 1 3 29 29 H 1.09000 * 109.47295 * 183.25747 * 7 5 3 30 30 H 1.09005 * 109.47314 * 303.25056 * 7 5 3 31 31 H 1.08994 * 109.47390 * 63.25593 * 7 5 3 32 32 H 1.08997 * 109.47435 * 295.00137 * 8 5 3 33 33 H 1.09001 * 109.46909 * 55.00244 * 8 5 3 34 34 H 0.97000 * 120.00422 * 180.02562 * 12 11 9 35 35 H 1.08997 * 108.81413 * 312.20567 * 18 17 3 36 36 H 1.09004 * 108.81426 * 70.48665 * 18 17 3 37 37 H 1.09001 * 109.63538 * 334.02529 * 19 18 17 38 38 H 1.09001 * 109.63499 * 213.42837 * 19 18 17 39 39 H 1.08993 * 108.94229 * 160.76497 * 20 19 18 40 40 H 1.09004 * 108.93546 * 42.16047 * 20 19 18 41 41 H 1.09006 * 108.93451 * 300.41781 * 21 20 19 42 42 H 1.09004 * 108.93895 * 181.81800 * 21 20 19 43 43 H 1.09000 * 109.63057 * 161.76139 * 22 21 20 44 44 H 1.08995 * 109.63516 * 41.16866 * 22 21 20 45 45 H 1.08993 * 108.81452 * 205.70135 * 23 17 3 46 46 H 1.09007 * 108.80783 * 323.97176 * 23 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.4678 2.0301 -0.7179 5 6 3.5193 1.4603 -0.3902 6 1 3.8892 2.4854 -0.3659 7 6 4.3175 0.6065 0.5971 8 6 3.6813 0.8930 -1.8019 9 6 5.1192 1.0235 -2.2338 10 1 5.8450 1.4663 -1.5678 11 6 5.5081 0.5776 -3.4792 12 7 4.6244 0.0380 -4.2899 13 14 7.2906 0.7387 -4.0142 14 1 8.1593 -0.0159 -3.0756 15 1 7.4478 0.1882 -5.3845 16 1 7.6818 2.1712 -4.0079 17 7 1.8807 2.0182 1.3419 18 6 0.4556 2.2857 1.6385 19 6 0.2633 3.1184 2.8767 20 6 0.1666 4.6009 2.4597 21 6 1.4751 5.1800 2.1763 22 6 2.1899 4.4630 1.0118 23 6 2.7785 3.1795 1.5310 24 1 -0.3634 -0.0221 1.0274 25 1 -0.3633 0.9008 -0.4946 26 1 -0.3634 -0.8787 -0.5329 27 1 1.8933 -0.5140 -0.8900 28 1 1.8933 -0.5139 0.8900 29 1 5.3784 0.6657 0.3537 30 1 4.1561 0.9756 1.6099 31 1 3.9870 -0.4300 0.5311 32 1 3.3946 -0.1585 -1.8061 33 1 3.0433 1.4463 -2.4911 34 1 4.8980 -0.2761 -5.1660 35 1 0.0124 2.8086 0.7910 36 1 -0.0605 1.3347 1.7709 37 1 1.1126 2.9810 3.5460 38 1 -0.6558 2.8189 3.3804 39 1 -0.3031 5.1651 3.2653 40 1 -0.4549 4.6776 1.5674 41 1 2.0949 5.1077 3.0701 42 1 1.3485 6.2318 1.9198 43 1 2.9846 5.0993 0.6226 44 1 1.4724 4.2434 0.2213 45 1 2.9867 3.2933 2.5948 46 1 3.7165 2.9870 1.0102 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259706215.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:04:56 Heat of formation + Delta-G solvation = -13.885627 kcal Electronic energy + Delta-G solvation = -20546.575876 eV Core-core repulsion = 17856.473879 eV Total energy + Delta-G solvation = -2690.101998 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -39.71827 -36.68843 -33.58696 -32.51314 -31.88745 -30.97123 -27.32084 -26.62059 -24.75492 -24.46465 -22.92736 -21.56477 -20.43536 -19.56490 -17.78800 -16.62379 -16.06188 -15.53879 -14.66697 -14.53419 -14.27895 -13.85912 -13.74070 -13.26035 -12.95402 -12.60410 -12.46333 -12.14197 -12.03174 -11.85741 -11.50872 -11.39476 -11.18608 -11.06668 -10.88480 -10.76450 -10.70099 -10.51572 -10.43270 -10.25653 -10.01839 -9.85599 -9.78973 -9.38759 -9.02727 -8.80727 -8.28050 -7.71201 -5.95049 -3.95909 3.35542 3.40064 3.42428 4.22097 4.50161 4.73080 4.79962 5.01195 5.25245 5.31765 5.39994 5.45513 5.49570 5.56029 5.63442 5.67278 5.72711 5.85317 5.95249 6.01189 6.05987 6.10329 6.11221 6.16141 6.18524 6.24834 6.30310 6.36549 6.41986 6.49782 6.53031 6.57633 6.65825 6.75772 6.92701 7.04520 7.22678 7.26780 7.64594 7.65373 7.74037 7.90671 8.05464 8.49750 9.10256 9.67149 11.16279 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.027172 B = 0.005643 C = 0.005068 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.232674 B = 4961.126359 C = 5523.933184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.118 4.118 3 C 0.095 3.905 4 H 0.033 0.967 5 C -0.087 4.087 6 H 0.061 0.939 7 C -0.127 4.127 8 C 0.029 3.971 9 C -0.513 4.513 10 H 0.054 0.946 11 C 0.057 3.943 12 N -0.897 5.897 13 Si 0.888 3.112 14 H -0.277 1.277 15 H -0.288 1.288 16 H -0.278 1.278 17 N -0.538 5.538 18 C 0.052 3.948 19 C -0.120 4.120 20 C -0.119 4.119 21 C -0.116 4.116 22 C -0.147 4.147 23 C 0.041 3.959 24 H 0.052 0.948 25 H 0.048 0.952 26 H 0.046 0.954 27 H 0.079 0.921 28 H 0.067 0.933 29 H 0.050 0.950 30 H 0.043 0.957 31 H 0.045 0.955 32 H 0.021 0.979 33 H 0.010 0.990 34 H 0.259 0.741 35 H 0.027 0.973 36 H 0.079 0.921 37 H 0.073 0.927 38 H 0.063 0.937 39 H 0.054 0.946 40 H 0.056 0.944 41 H 0.059 0.941 42 H 0.053 0.947 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.062 0.938 46 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.709 6.007 13.022 16.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.156 4.156 3 C -0.012 4.012 4 H 0.051 0.949 5 C -0.105 4.105 6 H 0.079 0.921 7 C -0.184 4.184 8 C -0.008 4.008 9 C -0.551 4.551 10 H 0.072 0.928 11 C -0.144 4.144 12 N -0.536 5.536 13 Si 0.716 3.284 14 H -0.203 1.203 15 H -0.214 1.214 16 H -0.204 1.204 17 N -0.263 5.263 18 C -0.075 4.075 19 C -0.158 4.158 20 C -0.156 4.156 21 C -0.153 4.153 22 C -0.186 4.186 23 C -0.086 4.086 24 H 0.071 0.929 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.097 0.903 28 H 0.086 0.914 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.040 0.960 33 H 0.029 0.971 34 H 0.069 0.931 35 H 0.045 0.955 36 H 0.097 0.903 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.078 0.922 42 H 0.071 0.929 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.081 0.919 46 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.598 5.597 13.173 16.697 hybrid contribution 0.630 0.770 -1.076 1.466 sum -7.968 6.367 12.097 15.823 Atomic orbital electron populations 1.22077 0.97342 1.00991 1.00530 1.21677 0.94232 0.96635 1.03034 1.21801 0.97734 0.94530 0.87155 0.94943 1.21459 0.91326 0.99361 0.98405 0.92097 1.21675 0.99931 0.99397 0.97374 1.19181 0.96519 0.96157 0.88961 1.21209 0.94588 1.39318 0.99986 0.92767 1.24998 0.97090 0.95512 0.96814 1.69951 1.33640 1.41292 1.08751 0.86724 0.85710 0.78309 0.77644 1.20291 1.21402 1.20382 1.61938 1.06032 1.29695 1.28657 1.22098 0.89618 0.99628 0.96119 1.21442 1.01894 0.94245 0.98205 1.20592 0.97746 0.96404 1.00901 1.20541 0.96921 0.99128 0.98727 1.21901 1.00382 0.98349 0.97973 1.22195 0.97785 0.87687 1.00983 0.92897 0.93330 0.93503 0.90279 0.91391 0.93063 0.93847 0.93584 0.96048 0.97127 0.93087 0.95480 0.90315 0.90855 0.91806 0.92706 0.92548 0.92249 0.92867 0.91642 0.91937 0.91923 0.88833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 8.55 37.16 0.32 -1.83 16 2 C -0.12 -1.98 4.60 -26.73 -0.12 -2.10 16 3 C 0.10 1.66 1.52 -67.72 -0.10 1.56 16 4 H 0.03 0.61 7.41 -51.93 -0.39 0.23 16 5 C -0.09 -1.75 1.58 -90.62 -0.14 -1.90 16 6 H 0.06 1.25 5.83 -51.93 -0.30 0.95 16 7 C -0.13 -2.42 8.03 37.15 0.30 -2.12 16 8 C 0.03 0.74 4.03 -27.88 -0.11 0.62 16 9 C -0.51 -14.26 8.45 -34.44 -0.29 -14.55 16 10 H 0.05 1.47 7.05 -52.49 -0.37 1.10 16 11 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 12 N -0.90 -26.90 13.29 55.43 0.74 -26.16 16 13 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 14 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 17 N -0.54 -8.04 4.01 -227.92 -0.91 -8.95 16 18 C 0.05 0.68 3.82 -4.49 -0.02 0.66 16 19 C -0.12 -1.32 5.63 -27.32 -0.15 -1.47 16 20 C -0.12 -1.24 5.30 -29.42 -0.16 -1.40 16 21 C -0.12 -1.27 5.30 -29.42 -0.16 -1.42 16 22 C -0.15 -1.94 5.60 -27.32 -0.15 -2.09 16 23 C 0.04 0.58 4.09 -4.49 -0.02 0.56 16 24 H 0.05 0.67 6.03 -51.93 -0.31 0.35 16 25 H 0.05 0.69 7.12 -51.93 -0.37 0.32 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.08 1.52 5.92 -51.93 -0.31 1.21 16 28 H 0.07 1.13 7.41 -51.93 -0.38 0.74 16 29 H 0.05 1.04 7.05 -51.93 -0.37 0.68 16 30 H 0.04 0.74 6.71 -51.93 -0.35 0.40 16 31 H 0.05 0.89 6.96 -51.93 -0.36 0.53 16 32 H 0.02 0.57 6.41 -51.93 -0.33 0.24 16 33 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.07 16 35 H 0.03 0.37 6.16 -51.93 -0.32 0.05 16 36 H 0.08 1.00 4.87 -51.93 -0.25 0.75 16 37 H 0.07 0.85 7.08 -51.93 -0.37 0.48 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.62 7.52 -51.93 -0.39 0.23 16 41 H 0.06 0.63 7.52 -51.93 -0.39 0.24 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.06 0.91 7.00 -51.93 -0.36 0.55 16 45 H 0.06 0.84 6.59 -51.93 -0.34 0.50 16 46 H 0.09 1.50 4.18 -51.93 -0.22 1.29 16 LS Contribution 322.07 15.07 4.85 4.85 Total: -1.00 -28.50 322.07 -9.41 -37.91 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -8.16 Total: -0.39 kcal Atomic # 6 Polarization: -23.05 SS G_CDS: -0.91 Total: -23.96 kcal Atomic # 7 Polarization: -34.94 SS G_CDS: -0.18 Total: -35.12 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -28.50 -9.41 -37.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259706215.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.024 kcal (2) G-P(sol) polarization free energy of solvation -28.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.477 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.910 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds