Wall clock time and date at job start Mon Mar 30 2020 06:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47001 * 2 1 4 4 H 1.08998 * 109.47589 * 302.61175 * 3 2 1 5 5 C 1.53005 * 109.47045 * 182.60948 * 3 2 1 6 6 H 1.09002 * 109.46919 * 289.15113 * 5 3 2 7 7 C 1.53000 * 109.46931 * 169.14923 * 5 3 2 8 8 C 1.52998 * 109.46833 * 49.14795 * 5 3 2 9 9 C 1.50705 * 109.46825 * 184.99589 * 8 5 3 10 10 H 1.07995 * 120.00060 * 0.02562 * 9 8 5 11 11 C 1.37879 * 119.99560 * 180.02562 * 9 8 5 12 12 N 1.31513 * 120.00449 * 359.72852 * 11 9 8 13 13 Si 1.86804 * 119.99672 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47101 * 59.99797 * 13 11 9 15 15 H 1.48499 * 109.47073 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.46836 * 299.99776 * 13 11 9 17 17 N 1.46905 * 109.46948 * 62.61497 * 3 2 1 18 18 C 1.48008 * 110.99766 * 195.51247 * 17 3 2 19 19 C 1.50444 * 112.82362 * 191.34403 * 18 17 3 20 20 C 1.54306 * 108.49850 * 93.72884 * 19 18 17 21 21 C 1.45885 * 112.18465 * 281.45833 * 20 19 18 22 22 C 1.54306 * 112.18091 * 61.12324 * 21 20 19 23 23 C 1.47993 * 111.00191 * 66.79143 * 17 3 2 24 24 H 1.09005 * 109.47296 * 184.66642 * 1 2 3 25 25 H 1.08994 * 109.47588 * 304.66629 * 1 2 3 26 26 H 1.09000 * 109.47428 * 64.67487 * 1 2 3 27 27 H 1.09000 * 109.46840 * 240.00177 * 2 1 3 28 28 H 1.08996 * 109.46983 * 120.00323 * 2 1 3 29 29 H 1.08998 * 109.47205 * 89.15982 * 7 5 3 30 30 H 1.08996 * 109.46874 * 209.15466 * 7 5 3 31 31 H 1.08997 * 109.47541 * 329.15489 * 7 5 3 32 32 H 1.09006 * 109.46739 * 65.00076 * 8 5 3 33 33 H 1.08997 * 109.47443 * 305.00130 * 8 5 3 34 34 H 0.96999 * 120.00309 * 180.02562 * 12 11 9 35 35 H 1.08999 * 108.80917 * 312.20510 * 18 17 3 36 36 H 1.09001 * 108.81171 * 70.47899 * 18 17 3 37 37 H 1.09004 * 109.63487 * 334.02029 * 19 18 17 38 38 H 1.09001 * 109.79541 * 213.52709 * 19 18 17 39 39 H 1.09007 * 108.93768 * 160.76473 * 20 19 18 40 40 H 1.08994 * 108.94313 * 42.15789 * 20 19 18 41 41 H 1.09002 * 108.94093 * 300.42623 * 21 20 19 42 42 H 1.09004 * 108.93699 * 181.82166 * 21 20 19 43 43 H 1.09007 * 109.63004 * 161.75738 * 22 21 20 44 44 H 1.09001 * 109.63453 * 41.16689 * 22 21 20 45 45 H 1.09002 * 108.80911 * 205.70225 * 23 17 3 46 46 H 1.09002 * 108.81132 * 323.97301 * 23 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6389 1.9697 -0.8656 5 6 3.5686 1.4430 -0.0657 6 1 3.9731 1.0912 0.8834 7 6 4.0669 2.8638 -0.3373 8 6 4.0309 0.5162 -1.1919 9 6 5.5349 0.4208 -1.1783 10 1 6.1039 0.9661 -0.4400 11 6 6.1843 -0.3629 -2.1085 12 7 5.4910 -1.0312 -3.0042 13 14 8.0484 -0.4818 -2.0912 14 1 8.4975 -1.0282 -0.7855 15 1 8.4973 -1.3802 -3.1851 16 1 8.6324 0.8690 -2.2897 17 7 1.6025 2.1164 1.2298 18 6 1.7461 3.5846 1.1098 19 6 1.5719 4.2973 2.4232 20 6 2.9628 4.4934 3.0620 21 6 3.4541 3.2753 3.6969 22 6 3.6152 2.1176 2.6895 23 6 2.2578 1.5278 2.4191 24 1 -0.3634 -1.0243 0.0836 25 1 -0.3634 0.5845 0.8452 26 1 -0.3634 0.4396 -0.9289 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 4.2144 3.3843 0.6089 30 1 5.0117 2.8201 -0.8790 31 1 3.3297 3.3993 -0.9355 32 1 3.7009 0.9168 -2.1505 33 1 3.6025 -0.4753 -1.0455 34 1 5.9479 -1.5828 -3.6583 35 1 2.7374 3.8098 0.7164 36 1 0.9992 3.9546 0.4074 37 1 0.9461 3.6983 3.0848 38 1 1.1050 5.2682 2.2573 39 1 2.8998 5.2823 3.8116 40 1 3.6676 4.7983 2.2885 41 1 2.7517 2.9732 4.4737 42 1 4.4207 3.4812 4.1568 43 1 4.2690 1.3539 3.1107 44 1 4.0413 2.4969 1.7607 45 1 1.6225 1.6945 3.2890 46 1 2.3653 0.4540 2.2657 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259706216.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:01 Heat of formation + Delta-G solvation = 0.744345 kcal Electronic energy + Delta-G solvation = -20926.119518 eV Core-core repulsion = 18236.651924 eV Total energy + Delta-G solvation = -2689.467594 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.12503 -36.28287 -33.49795 -32.10779 -31.77863 -31.59443 -27.23674 -27.01456 -25.14215 -24.20239 -22.63766 -21.21919 -20.26085 -19.20656 -18.68544 -16.63792 -15.91815 -15.59596 -14.82473 -14.34622 -14.05191 -13.91423 -13.37080 -13.02055 -12.90573 -12.73170 -12.61315 -12.16773 -11.98538 -11.86595 -11.56918 -11.34180 -11.27121 -10.86308 -10.76949 -10.56331 -10.50113 -10.43924 -10.36933 -10.11979 -10.04449 -9.87725 -9.80392 -9.41688 -9.27076 -8.90432 -8.29533 -7.46477 -5.96992 -3.98127 3.32844 3.37869 3.39888 4.30395 4.47372 4.83911 4.90624 5.10607 5.32559 5.36879 5.39175 5.52630 5.60304 5.66897 5.76602 5.79847 5.82028 5.90607 5.95609 6.05997 6.12768 6.14554 6.20068 6.22090 6.26545 6.28891 6.33164 6.39405 6.44052 6.48322 6.57403 6.61399 6.73220 6.73325 6.94067 6.95364 7.13026 7.20845 7.65799 7.67297 7.74351 7.89970 8.03235 8.47642 9.08188 9.64860 11.13862 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.021954 B = 0.006812 C = 0.005758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.079072 B = 4109.552210 C = 4861.491703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.118 4.118 3 C 0.092 3.908 4 H 0.070 0.930 5 C -0.125 4.125 6 H 0.073 0.927 7 C -0.150 4.150 8 C 0.028 3.972 9 C -0.514 4.514 10 H 0.052 0.948 11 C 0.057 3.943 12 N -0.895 5.895 13 Si 0.886 3.114 14 H -0.278 1.278 15 H -0.288 1.288 16 H -0.278 1.278 17 N -0.539 5.539 18 C 0.031 3.969 19 C -0.117 4.117 20 C -0.120 4.120 21 C -0.115 4.115 22 C -0.180 4.180 23 C 0.062 3.938 24 H 0.039 0.961 25 H 0.061 0.939 26 H 0.043 0.957 27 H 0.079 0.921 28 H 0.057 0.943 29 H 0.047 0.953 30 H 0.069 0.931 31 H 0.042 0.958 32 H 0.012 0.988 33 H 0.024 0.976 34 H 0.260 0.740 35 H 0.068 0.932 36 H 0.060 0.940 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.053 0.947 40 H 0.058 0.942 41 H 0.054 0.946 42 H 0.052 0.948 43 H 0.063 0.937 44 H 0.104 0.896 45 H 0.060 0.940 46 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.779 8.053 10.437 15.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.155 4.155 3 C -0.016 4.016 4 H 0.088 0.912 5 C -0.144 4.144 6 H 0.091 0.909 7 C -0.206 4.206 8 C -0.009 4.009 9 C -0.553 4.553 10 H 0.071 0.929 11 C -0.143 4.143 12 N -0.535 5.535 13 Si 0.714 3.286 14 H -0.204 1.204 15 H -0.213 1.213 16 H -0.204 1.204 17 N -0.263 5.263 18 C -0.096 4.096 19 C -0.154 4.154 20 C -0.157 4.157 21 C -0.153 4.153 22 C -0.218 4.218 23 C -0.065 4.065 24 H 0.058 0.942 25 H 0.080 0.920 26 H 0.062 0.938 27 H 0.097 0.903 28 H 0.075 0.925 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.061 0.939 32 H 0.031 0.969 33 H 0.042 0.958 34 H 0.069 0.931 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.073 0.927 42 H 0.071 0.929 43 H 0.081 0.919 44 H 0.121 0.879 45 H 0.079 0.921 46 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -8.256 7.862 10.349 15.397 hybrid contribution 1.977 0.037 -0.139 1.983 sum -6.278 7.899 10.211 14.355 Atomic orbital electron populations 1.21670 0.96488 1.00113 1.01570 1.21712 0.95173 0.96041 1.02619 1.21825 0.94189 0.94457 0.91095 0.91182 1.22104 0.93867 0.96331 1.02141 0.90932 1.22265 1.02230 0.96663 0.99470 1.19220 0.95469 0.94006 0.92223 1.21220 0.92284 1.27451 1.14335 0.92945 1.24993 0.97859 0.95795 0.95701 1.69945 1.35232 1.30199 1.18103 0.86752 0.86383 0.77882 0.77533 1.20363 1.21349 1.20399 1.62073 1.58330 1.03132 1.02807 1.22304 1.02462 0.87720 0.97072 1.21385 0.96731 0.99856 0.97469 1.20593 0.97190 0.97833 1.00094 1.20543 1.00449 0.95890 0.98396 1.22650 0.99253 0.98172 1.01685 1.21784 0.92693 0.99108 0.92942 0.94186 0.92034 0.93763 0.90255 0.92455 0.93459 0.91162 0.93870 0.96937 0.95797 0.93056 0.91438 0.92189 0.91263 0.91936 0.92840 0.92307 0.92706 0.92923 0.91863 0.87862 0.92146 0.91161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.08 9.84 37.16 0.37 -1.71 16 2 C -0.12 -2.01 4.76 -26.73 -0.13 -2.14 16 3 C 0.09 1.58 1.55 -67.71 -0.10 1.48 16 4 H 0.07 1.25 7.71 -51.93 -0.40 0.85 16 5 C -0.12 -2.44 1.41 -90.62 -0.13 -2.57 16 6 H 0.07 1.45 4.72 -51.93 -0.25 1.21 16 7 C -0.15 -2.76 7.25 37.16 0.27 -2.49 16 8 C 0.03 0.70 3.94 -27.88 -0.11 0.59 16 9 C -0.51 -14.15 8.03 -34.44 -0.28 -14.43 16 10 H 0.05 1.41 7.40 -52.49 -0.39 1.02 16 11 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 12 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 13 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 15 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 16 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 17 N -0.54 -8.01 3.92 -227.91 -0.89 -8.91 16 18 C 0.03 0.43 4.60 -4.49 -0.02 0.40 16 19 C -0.12 -1.35 5.63 -27.32 -0.15 -1.51 16 20 C -0.12 -1.36 5.30 -29.42 -0.16 -1.52 16 21 C -0.12 -1.38 5.30 -29.42 -0.16 -1.54 16 22 C -0.18 -2.55 4.14 -27.32 -0.11 -2.66 16 23 C 0.06 0.89 4.52 -4.50 -0.02 0.87 16 24 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.06 0.89 7.55 -51.93 -0.39 0.50 16 26 H 0.04 0.64 8.14 -51.93 -0.42 0.21 16 27 H 0.08 1.54 6.03 -51.93 -0.31 1.23 16 28 H 0.06 0.98 6.18 -51.93 -0.32 0.66 16 29 H 0.05 0.78 3.96 -51.93 -0.21 0.57 16 30 H 0.07 1.46 6.67 -51.93 -0.35 1.12 16 31 H 0.04 0.74 6.90 -51.93 -0.36 0.39 16 32 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.02 0.63 5.94 -51.93 -0.31 0.32 16 34 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 35 H 0.07 0.98 2.27 -51.93 -0.12 0.86 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.83 7.08 -51.93 -0.37 0.46 16 38 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.71 7.07 -51.93 -0.37 0.35 16 41 H 0.05 0.62 7.52 -51.93 -0.39 0.23 16 42 H 0.05 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 44 H 0.10 1.64 2.28 -51.93 -0.12 1.53 16 45 H 0.06 0.81 6.59 -51.93 -0.34 0.46 16 46 H 0.07 1.08 5.70 -51.93 -0.30 0.78 16 LS Contribution 314.78 15.07 4.74 4.74 Total: -1.00 -28.05 314.78 -9.06 -37.11 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: -7.79 Total: 2.07 kcal Atomic # 6 Polarization: -24.86 SS G_CDS: -0.83 Total: -25.69 kcal Atomic # 7 Polarization: -34.67 SS G_CDS: -0.16 Total: -34.83 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -28.05 -9.06 -37.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259706216.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.853 kcal (2) G-P(sol) polarization free energy of solvation -28.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.801 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.109 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds