Wall clock time and date at job start Mon Mar 30 2020 06:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47001 * 2 1 4 4 H 1.08998 * 109.47589 * 302.61175 * 3 2 1 5 5 C 1.53005 * 109.47045 * 182.60948 * 3 2 1 6 6 H 1.09002 * 109.46919 * 289.15113 * 5 3 2 7 7 C 1.53000 * 109.46931 * 169.14923 * 5 3 2 8 8 C 1.52998 * 109.46833 * 49.14795 * 5 3 2 9 9 C 1.50705 * 109.46825 * 184.99589 * 8 5 3 10 10 H 1.07995 * 120.00060 * 0.02562 * 9 8 5 11 11 C 1.37879 * 119.99560 * 180.02562 * 9 8 5 12 12 N 1.31513 * 120.00449 * 359.72852 * 11 9 8 13 13 Si 1.86804 * 119.99672 * 180.02562 * 11 9 8 14 14 H 1.48497 * 109.47101 * 59.99797 * 13 11 9 15 15 H 1.48499 * 109.47073 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.46836 * 299.99776 * 13 11 9 17 17 N 1.46905 * 109.46948 * 62.61497 * 3 2 1 18 18 C 1.48008 * 110.99766 * 195.51247 * 17 3 2 19 19 C 1.50444 * 112.82362 * 191.34403 * 18 17 3 20 20 C 1.54306 * 108.49850 * 93.72884 * 19 18 17 21 21 C 1.45885 * 112.18465 * 281.45833 * 20 19 18 22 22 C 1.54306 * 112.18091 * 61.12324 * 21 20 19 23 23 C 1.47993 * 111.00191 * 66.79143 * 17 3 2 24 24 H 1.09005 * 109.47296 * 184.66642 * 1 2 3 25 25 H 1.08994 * 109.47588 * 304.66629 * 1 2 3 26 26 H 1.09000 * 109.47428 * 64.67487 * 1 2 3 27 27 H 1.09000 * 109.46840 * 240.00177 * 2 1 3 28 28 H 1.08996 * 109.46983 * 120.00323 * 2 1 3 29 29 H 1.08998 * 109.47205 * 89.15982 * 7 5 3 30 30 H 1.08996 * 109.46874 * 209.15466 * 7 5 3 31 31 H 1.08997 * 109.47541 * 329.15489 * 7 5 3 32 32 H 1.09006 * 109.46739 * 65.00076 * 8 5 3 33 33 H 1.08997 * 109.47443 * 305.00130 * 8 5 3 34 34 H 0.96999 * 120.00309 * 180.02562 * 12 11 9 35 35 H 1.08999 * 108.80917 * 312.20510 * 18 17 3 36 36 H 1.09001 * 108.81171 * 70.47899 * 18 17 3 37 37 H 1.09004 * 109.63487 * 334.02029 * 19 18 17 38 38 H 1.09001 * 109.79541 * 213.52709 * 19 18 17 39 39 H 1.09007 * 108.93768 * 160.76473 * 20 19 18 40 40 H 1.08994 * 108.94313 * 42.15789 * 20 19 18 41 41 H 1.09002 * 108.94093 * 300.42623 * 21 20 19 42 42 H 1.09004 * 108.93699 * 181.82166 * 21 20 19 43 43 H 1.09007 * 109.63004 * 161.75738 * 22 21 20 44 44 H 1.09001 * 109.63453 * 41.16689 * 22 21 20 45 45 H 1.09002 * 108.80911 * 205.70225 * 23 17 3 46 46 H 1.09002 * 108.81132 * 323.97301 * 23 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6389 1.9697 -0.8656 5 6 3.5686 1.4430 -0.0657 6 1 3.9731 1.0912 0.8834 7 6 4.0669 2.8638 -0.3373 8 6 4.0309 0.5162 -1.1919 9 6 5.5349 0.4208 -1.1783 10 1 6.1039 0.9661 -0.4400 11 6 6.1843 -0.3629 -2.1085 12 7 5.4910 -1.0312 -3.0042 13 14 8.0484 -0.4818 -2.0912 14 1 8.4975 -1.0282 -0.7855 15 1 8.4973 -1.3802 -3.1851 16 1 8.6324 0.8690 -2.2897 17 7 1.6025 2.1164 1.2298 18 6 1.7461 3.5846 1.1098 19 6 1.5719 4.2973 2.4232 20 6 2.9628 4.4934 3.0620 21 6 3.4541 3.2753 3.6969 22 6 3.6152 2.1176 2.6895 23 6 2.2578 1.5278 2.4191 24 1 -0.3634 -1.0243 0.0836 25 1 -0.3634 0.5845 0.8452 26 1 -0.3634 0.4396 -0.9289 27 1 1.8933 -0.5138 -0.8900 28 1 1.8933 -0.5139 0.8899 29 1 4.2144 3.3843 0.6089 30 1 5.0117 2.8201 -0.8790 31 1 3.3297 3.3993 -0.9355 32 1 3.7009 0.9168 -2.1505 33 1 3.6025 -0.4753 -1.0455 34 1 5.9479 -1.5828 -3.6583 35 1 2.7374 3.8098 0.7164 36 1 0.9992 3.9546 0.4074 37 1 0.9461 3.6983 3.0848 38 1 1.1050 5.2682 2.2573 39 1 2.8998 5.2823 3.8116 40 1 3.6676 4.7983 2.2885 41 1 2.7517 2.9732 4.4737 42 1 4.4207 3.4812 4.1568 43 1 4.2690 1.3539 3.1107 44 1 4.0413 2.4969 1.7607 45 1 1.6225 1.6945 3.2890 46 1 2.3653 0.4540 2.2657 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259706216.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:05:01 Heat of formation + Delta-G solvation = -14.077766 kcal Electronic energy + Delta-G solvation = -20926.762253 eV Core-core repulsion = 18236.651924 eV Total energy + Delta-G solvation = -2690.110329 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.38480 -37.56402 -35.31611 -33.50465 -33.25317 -32.84379 -29.12799 -28.24045 -26.54297 -25.36628 -24.44338 -22.59852 -21.27955 -20.54637 -20.13246 -18.52173 -17.39669 -16.79848 -16.46706 -15.83779 -15.38836 -15.26460 -14.52886 -14.46064 -14.22624 -14.03822 -13.92630 -13.80878 -13.35026 -13.26651 -13.08539 -12.91618 -12.60490 -12.56874 -12.41108 -12.02701 -11.90655 -11.73746 -11.54817 -11.47778 -11.41894 -11.25134 -11.17448 -10.92407 -10.88507 -10.72549 -10.45077 -8.77534 -8.15136 -6.24399 1.37588 1.39419 1.47146 2.40916 3.08280 3.16950 3.81566 3.91839 3.96020 4.14666 4.25459 4.31852 4.36772 4.43471 4.47337 4.56709 4.65042 4.68315 4.71486 4.80805 4.87864 4.91581 4.99466 5.08588 5.11163 5.12923 5.20865 5.24159 5.28672 5.31119 5.35348 5.36571 5.39113 5.47546 5.48292 5.55375 5.58343 5.62467 5.70509 5.86859 5.92367 6.30066 6.39251 6.48874 6.92008 7.42919 8.95108 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.021954 B = 0.006812 C = 0.005758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1275.079072 B = 4109.552210 C = 4861.491703 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.116 4.116 3 C 0.102 3.898 4 H 0.062 0.938 5 C -0.113 4.113 6 H 0.070 0.930 7 C -0.140 4.140 8 C 0.037 3.963 9 C -0.528 4.528 10 H 0.055 0.945 11 C 0.001 3.999 12 N -0.933 5.933 13 Si 0.954 3.046 14 H -0.269 1.269 15 H -0.285 1.285 16 H -0.269 1.269 17 N -0.532 5.532 18 C 0.028 3.972 19 C -0.110 4.110 20 C -0.119 4.119 21 C -0.110 4.110 22 C -0.180 4.180 23 C 0.064 3.936 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.040 0.960 31 H 0.051 0.949 32 H -0.019 1.019 33 H 0.002 0.998 34 H 0.261 0.739 35 H 0.058 0.942 36 H 0.062 0.938 37 H 0.070 0.930 38 H 0.080 0.920 39 H 0.073 0.927 40 H 0.049 0.951 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.084 0.916 45 H 0.079 0.921 46 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.995 9.495 12.363 17.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.154 4.154 3 C -0.006 4.006 4 H 0.080 0.920 5 C -0.133 4.133 6 H 0.089 0.911 7 C -0.197 4.197 8 C -0.001 4.001 9 C -0.566 4.566 10 H 0.073 0.927 11 C -0.196 4.196 12 N -0.574 5.574 13 Si 0.779 3.221 14 H -0.194 1.194 15 H -0.210 1.210 16 H -0.195 1.195 17 N -0.256 5.256 18 C -0.099 4.099 19 C -0.148 4.148 20 C -0.157 4.157 21 C -0.147 4.147 22 C -0.218 4.218 23 C -0.064 4.064 24 H 0.069 0.931 25 H 0.088 0.912 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.059 0.941 31 H 0.070 0.930 32 H -0.001 1.001 33 H 0.020 0.980 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.081 0.919 37 H 0.089 0.911 38 H 0.099 0.901 39 H 0.092 0.908 40 H 0.068 0.932 41 H 0.085 0.915 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.102 0.898 45 H 0.097 0.903 46 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -8.474 9.318 12.293 17.600 hybrid contribution 2.021 -0.416 -0.733 2.190 sum -6.453 8.902 11.561 15.954 Atomic orbital electron populations 1.21573 0.94204 1.01035 1.01949 1.21627 0.97124 0.95712 1.00909 1.21607 0.92067 0.94732 0.92231 0.91963 1.21963 0.95905 0.95818 0.99613 0.91141 1.22179 1.00782 0.96148 1.00540 1.19080 0.94355 0.93981 0.92683 1.21624 0.93709 1.27067 1.14191 0.92671 1.25870 1.02882 0.95513 0.95377 1.70085 1.37227 1.31102 1.18948 0.85676 0.80421 0.78198 0.77822 1.19415 1.21015 1.19456 1.62103 1.57831 1.03965 1.01684 1.22394 1.01984 0.86755 0.98717 1.21354 0.97041 1.00420 0.95978 1.20590 0.96706 0.98022 1.00338 1.20504 1.01212 0.95114 0.97912 1.22584 0.98770 0.99000 1.01495 1.21810 0.93206 0.98230 0.93143 0.93110 0.91165 0.93654 0.93499 0.92649 0.90985 0.94062 0.93003 1.00085 0.97990 0.93034 0.92398 0.91925 0.91117 0.90124 0.90818 0.93179 0.91522 0.92392 0.92530 0.89772 0.90317 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.73 9.84 71.98 0.71 -3.02 16 2 C -0.12 -4.04 4.76 30.59 0.15 -3.90 16 3 C 0.10 3.53 1.55 44.91 0.07 3.59 16 4 H 0.06 2.25 7.71 -2.39 -0.02 2.23 16 5 C -0.11 -4.54 1.41 -10.79 -0.02 -4.55 16 6 H 0.07 2.86 4.72 -2.39 -0.01 2.85 16 7 C -0.14 -5.17 7.25 71.98 0.52 -4.65 16 8 C 0.04 1.90 3.94 29.85 0.12 2.02 16 9 C -0.53 -29.81 8.03 25.60 0.21 -29.61 16 10 H 0.06 3.02 7.40 -2.91 -0.02 2.99 16 11 C 0.00 0.05 5.46 84.66 0.46 0.52 16 12 N -0.93 -57.21 13.29 21.45 0.28 -56.93 16 13 Si 0.95 44.79 29.54 68.60 2.03 46.81 16 14 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 15 H -0.28 -13.14 7.11 99.48 0.71 -12.43 16 16 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 17 N -0.53 -15.03 3.92 -874.98 -3.43 -18.46 16 18 C 0.03 0.70 4.60 85.26 0.39 1.10 16 19 C -0.11 -2.18 5.63 30.21 0.17 -2.01 16 20 C -0.12 -2.32 5.30 28.86 0.15 -2.16 16 21 C -0.11 -2.31 5.30 28.86 0.15 -2.16 16 22 C -0.18 -4.84 4.14 30.21 0.13 -4.72 16 23 C 0.06 1.72 4.52 85.27 0.39 2.10 16 24 H 0.05 1.33 8.14 -2.38 -0.02 1.31 16 25 H 0.07 1.89 7.55 -2.39 -0.02 1.88 16 26 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.05 1.93 6.03 -2.39 -0.01 1.91 16 28 H 0.05 1.93 6.18 -2.39 -0.01 1.91 16 29 H 0.07 2.31 3.96 -2.39 -0.01 2.30 16 30 H 0.04 1.74 6.67 -2.39 -0.02 1.73 16 31 H 0.05 1.78 6.90 -2.39 -0.02 1.77 16 32 H -0.02 -1.11 8.14 -2.38 -0.02 -1.13 16 33 H 0.00 0.10 5.94 -2.39 -0.01 0.09 16 34 H 0.26 15.16 8.31 -92.71 -0.77 14.39 16 35 H 0.06 1.58 2.27 -2.39 -0.01 1.57 16 36 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 37 H 0.07 1.42 7.08 -2.39 -0.02 1.40 16 38 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.07 1.18 8.14 -2.38 -0.02 1.16 16 40 H 0.05 1.07 7.07 -2.39 -0.02 1.06 16 41 H 0.07 1.27 7.52 -2.39 -0.02 1.25 16 42 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 43 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 44 H 0.08 2.59 2.28 -2.39 -0.01 2.58 16 45 H 0.08 1.87 6.59 -2.39 -0.02 1.86 16 46 H 0.06 1.67 5.70 -2.39 -0.01 1.66 16 Total: -1.00 -61.27 314.78 3.43 -57.85 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.95 Total: 18.19 kcal Atomic # 6 Polarization: -51.05 SS G_CDS: 3.59 Total: -47.45 kcal Atomic # 7 Polarization: -72.25 SS G_CDS: -3.14 Total: -75.39 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 2.03 Total: 46.81 kcal Total: -61.27 3.43 -57.85 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259706216.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.770 kcal (2) G-P(sol) polarization free energy of solvation -61.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.848 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds