Wall clock time and date at job start Mon Mar 30 2020 06:35:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.46866 * 2 1 4 4 C 1.52997 * 109.46974 * 119.99774 * 2 1 3 5 5 C 1.52996 * 109.47165 * 180.02562 * 4 2 1 6 6 C 1.53002 * 109.46972 * 300.00293 * 5 4 2 7 7 C 1.52997 * 109.47415 * 59.99860 * 6 5 4 8 8 C 1.52999 * 109.47000 * 240.00185 * 2 1 3 9 9 C 1.52997 * 109.46991 * 299.99626 * 8 2 1 10 10 N 1.46899 * 109.47571 * 59.99983 * 8 2 1 11 11 C 1.46893 * 110.99919 * 179.97438 * 10 8 2 12 12 C 1.53001 * 109.46995 * 180.02562 * 11 10 8 13 13 C 1.53004 * 109.47040 * 179.97438 * 12 11 10 14 14 C 1.53004 * 109.46863 * 179.97438 * 13 12 11 15 15 C 1.50701 * 109.47124 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99617 * 0.02562 * 15 14 13 17 17 C 1.37872 * 120.00433 * 180.02562 * 15 14 13 18 18 N 1.31519 * 119.99585 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00375 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.46905 * 59.99825 * 19 17 15 21 21 H 1.48502 * 109.46991 * 179.97438 * 19 17 15 22 22 H 1.48503 * 109.46796 * 299.99563 * 19 17 15 23 23 H 1.09000 * 109.46866 * 180.02562 * 1 2 3 24 24 H 1.09001 * 109.47372 * 300.00408 * 1 2 3 25 25 H 1.09004 * 109.47107 * 60.00109 * 1 2 3 26 26 H 1.09000 * 109.47140 * 60.00393 * 4 2 1 27 27 H 1.09001 * 109.47375 * 300.00376 * 4 2 1 28 28 H 1.08992 * 109.47534 * 180.02562 * 5 4 2 29 29 H 1.08996 * 109.47134 * 59.99508 * 5 4 2 30 30 H 1.09000 * 109.46986 * 299.99742 * 6 5 4 31 31 H 1.09001 * 109.47601 * 180.02562 * 6 5 4 32 32 H 1.09001 * 109.46922 * 180.02562 * 7 6 5 33 33 H 1.09000 * 109.47140 * 59.99976 * 7 6 5 34 34 H 1.09004 * 109.47261 * 300.00382 * 9 8 2 35 35 H 1.09002 * 109.47153 * 60.00555 * 9 8 2 36 36 H 1.09001 * 109.47289 * 180.02562 * 9 8 2 37 37 H 1.00900 * 110.99667 * 303.95620 * 10 8 2 38 38 H 1.09000 * 109.47408 * 299.99887 * 11 10 8 39 39 H 1.09006 * 109.47593 * 60.00012 * 11 10 8 40 40 H 1.09000 * 109.47191 * 299.99670 * 12 11 10 41 41 H 1.09001 * 109.47304 * 59.99923 * 12 11 10 42 42 H 1.09000 * 109.46988 * 299.99952 * 13 12 11 43 43 H 1.08993 * 109.47166 * 60.00173 * 13 12 11 44 44 H 1.09000 * 109.47285 * 300.00420 * 14 13 12 45 45 H 1.09001 * 109.47131 * 60.00296 * 14 13 12 46 46 H 0.97002 * 120.00075 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 1.2493 5 6 3.5700 -0.7207 1.2496 6 6 4.0805 -1.4415 0.0004 7 6 3.5705 -0.7204 -1.2489 8 6 2.0400 -0.7212 -1.2493 9 6 1.5301 -2.1637 -1.2492 10 7 1.5504 -0.0288 -2.4487 11 6 2.0219 -0.6945 -3.6702 12 6 1.4934 0.0540 -4.8955 13 6 1.9851 -0.6391 -6.1679 14 6 1.4560 0.1091 -7.3931 15 6 1.9408 -0.5732 -8.6464 16 1 2.5635 -1.4527 -8.5759 17 6 1.5893 -0.0746 -9.8828 18 7 0.8313 0.9968 -9.9685 19 14 2.1896 -0.9207 -11.4362 20 1 1.6948 -2.3206 -11.4601 21 1 1.6761 -0.1944 -12.6254 22 1 3.6744 -0.9199 -11.4581 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 1.6767 -1.7489 1.2493 27 1 1.6766 -0.2074 2.1392 28 1 3.9333 -1.2348 2.1393 29 1 3.9329 0.3071 1.2497 30 1 3.7175 -2.4693 0.0002 31 1 5.1705 -1.4416 0.0007 32 1 3.9339 -1.2343 -2.1388 33 1 3.9335 0.3074 -1.2487 34 1 1.8934 -2.6775 -0.3592 35 1 0.4401 -2.1637 -1.2493 36 1 1.8937 -2.6777 -2.1390 37 1 0.5439 0.0413 -2.4402 38 1 3.1118 -0.6940 -3.6868 39 1 1.6589 -1.7222 -3.6873 40 1 0.4035 0.0538 -4.8792 41 1 1.8569 1.0815 -4.8783 42 1 3.0750 -0.6385 -6.1839 43 1 1.6220 -1.6666 -6.1853 44 1 0.3661 0.1082 -7.3768 45 1 1.8188 1.1368 -7.3759 46 1 0.5837 1.3474 -10.8384 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308690467.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:19 Heat of formation + Delta-G solvation = -45.726437 kcal Electronic energy + Delta-G solvation = -19321.457433 eV Core-core repulsion = 16629.974714 eV Total energy + Delta-G solvation = -2691.482719 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.19619 -35.99682 -34.04385 -32.88352 -32.10348 -29.99400 -27.74260 -27.56164 -25.84467 -24.42220 -22.31478 -21.31610 -20.75934 -19.95994 -18.25764 -16.35361 -15.93976 -15.49710 -15.18065 -14.80190 -14.44854 -14.29086 -14.15989 -13.28236 -13.13930 -12.84612 -12.59681 -12.41955 -12.20311 -12.11508 -11.96212 -11.59585 -11.47771 -11.28822 -11.20740 -10.94557 -10.83347 -10.61356 -10.56493 -10.37673 -10.29949 -10.23865 -9.93533 -9.57699 -9.20897 -8.96639 -8.29729 -8.22531 -5.94709 -3.96916 3.36073 3.40102 3.42774 4.14843 4.48075 4.50146 4.56548 4.77370 4.94139 5.02229 5.13257 5.15806 5.31639 5.34017 5.40294 5.41790 5.47773 5.50348 5.61467 5.64120 5.70452 5.74362 5.80819 5.89654 5.93124 5.98516 6.01660 6.04853 6.13948 6.15028 6.23430 6.27203 6.39300 6.44523 6.58505 6.88812 7.02932 7.15659 7.32875 7.54990 7.74428 7.91197 8.06738 8.49565 9.10488 9.66675 11.16644 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.043926 B = 0.003296 C = 0.003177 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.285313 B = 8491.853201 C = 8811.082816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.077 4.077 3 H 0.076 0.924 4 C -0.115 4.115 5 C -0.119 4.119 6 C -0.121 4.121 7 C -0.107 4.107 8 C 0.120 3.880 9 C -0.188 4.188 10 N -0.682 5.682 11 C 0.055 3.945 12 C -0.115 4.115 13 C -0.108 4.108 14 C 0.022 3.978 15 C -0.520 4.520 16 H 0.053 0.947 17 C 0.055 3.945 18 N -0.897 5.897 19 Si 0.891 3.109 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.277 1.277 23 H 0.054 0.946 24 H 0.053 0.947 25 H 0.060 0.940 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.063 0.937 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.338 0.662 38 H 0.070 0.930 39 H 0.029 0.971 40 H 0.052 0.948 41 H 0.063 0.937 42 H 0.046 0.954 43 H 0.043 0.957 44 H 0.014 0.986 45 H 0.015 0.985 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.339 -4.125 23.850 24.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.096 4.096 3 H 0.095 0.905 4 C -0.153 4.153 5 C -0.157 4.157 6 C -0.159 4.159 7 C -0.145 4.145 8 C 0.029 3.971 9 C -0.246 4.246 10 N -0.313 5.313 11 C -0.074 4.074 12 C -0.153 4.153 13 C -0.146 4.146 14 C -0.016 4.016 15 C -0.559 4.559 16 H 0.072 0.928 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.719 3.281 20 H -0.203 1.203 21 H -0.213 1.213 22 H -0.203 1.203 23 H 0.073 0.927 24 H 0.072 0.928 25 H 0.079 0.921 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.080 0.920 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.082 0.918 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.158 0.842 38 H 0.089 0.911 39 H 0.047 0.953 40 H 0.071 0.929 41 H 0.082 0.918 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.032 0.968 45 H 0.034 0.966 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 2.754 -3.529 23.706 24.125 hybrid contribution -0.315 -1.237 -1.005 1.625 sum 2.439 -4.766 22.700 23.323 Atomic orbital electron populations 1.21935 0.95574 1.01676 1.01890 1.21095 0.95256 0.99884 0.93369 0.90524 1.21644 0.95537 1.00764 0.97351 1.21532 0.95697 1.00819 0.97619 1.21594 1.00083 0.99537 0.94651 1.21606 0.94052 1.01314 0.97558 1.20833 0.94819 0.91173 0.90312 1.22704 1.01223 0.98348 1.02345 1.60704 1.16169 1.53328 1.01076 1.22146 1.00438 0.95601 0.89200 1.21634 1.00046 1.00054 0.93590 1.21582 0.99616 0.98902 0.94549 1.19085 0.96178 0.95453 0.90840 1.21264 1.31223 1.12180 0.91215 0.92850 1.25033 0.95269 0.95077 0.99148 1.69963 1.36747 1.22476 1.24417 0.86673 0.79129 0.79601 0.82679 1.20299 1.21303 1.20252 0.92696 0.92811 0.92085 0.91849 0.92137 0.92349 0.91964 0.91918 0.92095 0.91729 0.91236 0.91811 0.92577 0.92302 0.84224 0.91129 0.95328 0.92945 0.91778 0.93522 0.93785 0.96782 0.96632 0.93011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 8.51 37.16 0.32 -1.03 16 2 C -0.08 -0.72 2.21 -90.62 -0.20 -0.92 16 3 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 4 C -0.12 -0.92 4.93 -26.73 -0.13 -1.06 16 5 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 6 C -0.12 -1.05 5.65 -26.73 -0.15 -1.20 16 7 C -0.11 -1.14 4.50 -26.71 -0.12 -1.27 16 8 C 0.12 1.27 0.47 -131.58 -0.06 1.21 16 9 C -0.19 -1.91 7.19 37.16 0.27 -1.64 16 10 N -0.68 -8.65 6.06 -99.94 -0.61 -9.26 16 11 C 0.05 0.79 4.90 -3.83 -0.02 0.78 16 12 C -0.12 -2.03 5.48 -26.73 -0.15 -2.18 16 13 C -0.11 -2.30 5.15 -26.73 -0.14 -2.44 16 14 C 0.02 0.58 4.97 -27.88 -0.14 0.44 16 15 C -0.52 -15.20 9.11 -34.44 -0.31 -15.51 16 16 H 0.05 1.51 7.74 -52.48 -0.41 1.10 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.61 13.29 55.43 0.74 -26.88 16 19 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 23 H 0.05 0.47 6.43 -51.93 -0.33 0.13 16 24 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.06 0.57 6.57 -51.93 -0.34 0.23 16 26 H 0.06 0.51 6.43 -51.93 -0.33 0.17 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.54 6.43 -51.93 -0.33 0.21 16 31 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.75 6.40 -51.93 -0.33 0.41 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 34 H 0.06 0.58 4.81 -51.93 -0.25 0.33 16 35 H 0.06 0.56 6.43 -51.93 -0.33 0.23 16 36 H 0.06 0.66 6.41 -51.93 -0.33 0.33 16 37 H 0.34 4.15 6.76 -39.29 -0.27 3.88 16 38 H 0.07 1.04 6.30 -51.93 -0.33 0.71 16 39 H 0.03 0.41 6.30 -51.93 -0.33 0.09 16 40 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 42 H 0.05 0.98 8.14 -51.93 -0.42 0.55 16 43 H 0.04 0.92 8.14 -51.93 -0.42 0.49 16 44 H 0.01 0.39 8.14 -51.93 -0.42 -0.03 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 LS Contribution 335.84 15.07 5.06 5.06 Total: -1.00 -29.96 335.84 -9.47 -39.43 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -8.55 Total: -1.04 kcal Atomic # 6 Polarization: -23.29 SS G_CDS: -1.09 Total: -24.39 kcal Atomic # 7 Polarization: -36.27 SS G_CDS: 0.13 Total: -36.13 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -29.96 -9.47 -39.43 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308690467.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.293 kcal (2) G-P(sol) polarization free energy of solvation -29.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds