Wall clock time and date at job start Mon Mar 30 2020 06:35:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47067 * 2 1 4 4 C 1.52997 * 109.47143 * 239.99982 * 2 1 3 5 5 C 1.53002 * 109.46817 * 180.02562 * 4 2 1 6 6 C 1.53000 * 109.47233 * 60.00194 * 5 4 2 7 7 C 1.52997 * 109.47060 * 299.99657 * 6 5 4 8 8 C 1.52999 * 109.47317 * 59.99960 * 7 6 5 9 9 C 1.53002 * 109.47628 * 180.02562 * 8 7 6 10 10 N 1.46906 * 109.46897 * 60.00033 * 8 7 6 11 11 C 1.46897 * 110.99814 * 60.00100 * 10 8 7 12 12 C 1.53002 * 109.47270 * 179.97438 * 11 10 8 13 13 C 1.52995 * 109.47554 * 180.02562 * 12 11 10 14 14 C 1.52992 * 109.47544 * 180.02562 * 13 12 11 15 15 C 1.50700 * 109.47459 * 180.02562 * 14 13 12 16 16 H 1.07997 * 119.99765 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99915 * 180.02562 * 15 14 13 18 18 N 1.31518 * 120.00288 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99713 * 179.97438 * 17 15 14 20 20 H 1.48495 * 109.47218 * 359.97438 * 19 17 15 21 21 H 1.48497 * 109.46901 * 119.99738 * 19 17 15 22 22 H 1.48494 * 109.47055 * 239.99771 * 19 17 15 23 23 H 1.09002 * 109.47067 * 179.97438 * 1 2 3 24 24 H 1.09000 * 109.47312 * 300.00027 * 1 2 3 25 25 H 1.09004 * 109.46930 * 60.00083 * 1 2 3 26 26 H 1.08993 * 109.47194 * 59.99677 * 4 2 1 27 27 H 1.09002 * 109.46695 * 299.99691 * 4 2 1 28 28 H 1.08992 * 109.47063 * 299.99823 * 5 4 2 29 29 H 1.09004 * 109.46733 * 179.97438 * 5 4 2 30 30 H 1.09002 * 109.47398 * 59.99826 * 6 5 4 31 31 H 1.09001 * 109.47194 * 180.02562 * 6 5 4 32 32 H 1.08996 * 109.47853 * 180.02562 * 7 6 5 33 33 H 1.09002 * 109.47153 * 300.00319 * 7 6 5 34 34 H 1.09001 * 109.47142 * 180.02562 * 9 8 7 35 35 H 1.08996 * 109.46698 * 300.00222 * 9 8 7 36 36 H 1.09002 * 109.46838 * 59.99718 * 9 8 7 37 37 H 1.00904 * 111.00086 * 296.04840 * 10 8 7 38 38 H 1.08996 * 109.47480 * 299.99835 * 11 10 8 39 39 H 1.09001 * 109.46981 * 60.00212 * 11 10 8 40 40 H 1.09000 * 109.47300 * 300.00319 * 12 11 10 41 41 H 1.09001 * 109.46874 * 60.00234 * 12 11 10 42 42 H 1.09000 * 109.47010 * 300.00414 * 13 12 11 43 43 H 1.08996 * 109.47260 * 59.99849 * 13 12 11 44 44 H 1.09000 * 109.47300 * 300.00231 * 14 13 12 45 45 H 1.09009 * 109.46745 * 59.99877 * 14 13 12 46 46 H 0.96998 * 119.99653 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5700 -0.7218 -1.2488 6 6 4.0795 -1.4434 0.0004 7 6 3.5695 -0.7222 1.2496 8 6 2.0395 -0.7215 1.2493 9 6 1.5294 0.0003 2.4982 10 7 1.5493 -2.1064 1.2490 11 6 2.0199 -2.8316 2.4367 12 6 1.4898 -4.2664 2.4014 13 6 1.9793 -5.0216 3.6387 14 6 1.4498 -6.4565 3.6031 15 6 1.9314 -7.2002 4.8222 16 1 2.5534 -6.6995 5.5494 17 6 1.5789 -8.5200 5.0085 18 7 0.8219 -9.1299 4.1227 19 14 2.1765 -9.4420 6.5193 20 1 3.0073 -8.5379 7.3545 21 1 1.0085 -9.9105 7.3075 22 1 2.9893 -10.6106 6.0966 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 1.6767 -0.2075 -2.1392 27 1 1.6767 -1.7489 -1.2491 28 1 3.9337 0.3057 -1.2486 29 1 3.9334 -1.2360 -2.1386 30 1 3.7158 -2.4710 0.0002 31 1 5.1695 -1.4434 0.0009 32 1 3.9327 -1.2359 2.1397 33 1 3.9332 0.3054 1.2498 34 1 0.4394 0.0002 2.4982 35 1 1.8924 -0.5135 3.3884 36 1 1.8932 1.0278 2.4980 37 1 1.8188 -2.5852 0.4027 38 1 3.1097 -2.8467 2.4452 39 1 1.6563 -2.3324 3.3349 40 1 0.3999 -4.2511 2.3932 41 1 1.8529 -4.7659 1.5032 42 1 3.0691 -5.0370 3.6474 43 1 1.6159 -4.5220 4.5367 44 1 0.3599 -6.4416 3.5942 45 1 1.8137 -6.9559 2.7051 46 1 0.5736 -10.0583 4.2541 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308690468.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:23 Heat of formation + Delta-G solvation = -46.765135 kcal Electronic energy + Delta-G solvation = -19526.802550 eV Core-core repulsion = 16835.274790 eV Total energy + Delta-G solvation = -2691.527760 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.22611 -35.65323 -33.86977 -32.99438 -32.12901 -30.47199 -27.73759 -27.40696 -25.60867 -24.27839 -22.21189 -21.07298 -20.96899 -20.01919 -18.50041 -16.35495 -16.00161 -15.32946 -14.93777 -14.85076 -14.42242 -14.28571 -14.12143 -13.59993 -12.89401 -12.63028 -12.43334 -12.26251 -12.07913 -11.95630 -11.83661 -11.71218 -11.57471 -11.39658 -11.25069 -10.98083 -10.91932 -10.63216 -10.48411 -10.42540 -10.31839 -10.11176 -9.96911 -9.58093 -9.21016 -8.94943 -8.30336 -8.17462 -5.95170 -3.97153 3.33497 3.40708 3.45121 4.24691 4.50144 4.51825 4.57271 4.65629 4.95285 4.98483 5.21610 5.26880 5.32138 5.38346 5.40415 5.47592 5.53885 5.61178 5.65955 5.70439 5.75142 5.79575 5.85723 5.89445 5.95341 5.98538 6.03544 6.05859 6.16879 6.23612 6.28150 6.32056 6.40281 6.48726 6.58436 6.89059 7.03219 7.16428 7.33992 7.57256 7.74794 7.90991 8.06458 8.49490 9.10702 9.66625 11.16232 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.035722 B = 0.003558 C = 0.003525 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 783.650080 B = 7868.300780 C = 7941.843613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.075 4.075 3 H 0.066 0.934 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.123 4.123 7 C -0.150 4.150 8 C 0.118 3.882 9 C -0.142 4.142 10 N -0.676 5.676 11 C 0.054 3.946 12 C -0.115 4.115 13 C -0.108 4.108 14 C 0.021 3.979 15 C -0.519 4.519 16 H 0.054 0.946 17 C 0.055 3.945 18 N -0.896 5.896 19 Si 0.890 3.110 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.069 0.931 24 H 0.054 0.946 25 H 0.043 0.957 26 H 0.060 0.940 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.067 0.933 35 H 0.057 0.943 36 H 0.052 0.948 37 H 0.338 0.662 38 H 0.028 0.972 39 H 0.070 0.930 40 H 0.063 0.937 41 H 0.051 0.949 42 H 0.043 0.957 43 H 0.046 0.954 44 H 0.015 0.985 45 H 0.014 0.986 46 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.373 20.409 -10.057 23.001 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.094 4.094 3 H 0.084 0.916 4 C -0.156 4.156 5 C -0.157 4.157 6 C -0.160 4.160 7 C -0.189 4.189 8 C 0.027 3.973 9 C -0.200 4.200 10 N -0.308 5.308 11 C -0.075 4.075 12 C -0.153 4.153 13 C -0.146 4.146 14 C -0.016 4.016 15 C -0.557 4.557 16 H 0.072 0.928 17 C -0.145 4.145 18 N -0.536 5.536 19 Si 0.718 3.282 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.211 1.211 23 H 0.088 0.912 24 H 0.073 0.927 25 H 0.062 0.938 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.086 0.914 35 H 0.076 0.924 36 H 0.071 0.929 37 H 0.159 0.841 38 H 0.046 0.954 39 H 0.089 0.911 40 H 0.082 0.918 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.034 0.966 45 H 0.032 0.968 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.675 20.403 -9.814 22.798 hybrid contribution 1.332 -0.794 0.604 1.664 sum 4.007 19.609 -9.210 22.031 Atomic orbital electron populations 1.21787 0.94581 1.02958 1.00557 1.21104 0.96329 0.98396 0.93588 0.91551 1.21640 0.95105 1.01297 0.97596 1.21544 0.95959 1.00489 0.97681 1.21541 1.00269 0.99583 0.94625 1.22264 0.97444 1.00925 0.98255 1.20863 0.91320 0.89894 0.95227 1.21936 1.02138 0.99079 0.96829 1.60746 1.63029 1.01551 1.05480 1.22146 0.97061 0.94928 0.93325 1.21623 1.01204 0.92976 0.99459 1.21574 0.99360 0.98477 0.95209 1.19096 0.96322 0.89404 0.96821 1.21336 1.31124 0.96177 1.07063 0.92753 1.25035 0.95276 0.97764 0.96470 1.69983 1.36885 1.11578 1.35136 0.86565 0.78568 0.79831 0.83219 1.19779 1.21022 1.21059 0.91177 0.92737 0.93818 0.92079 0.91404 0.92242 0.92156 0.91946 0.92106 0.91500 0.91940 0.91449 0.92441 0.92887 0.84147 0.95369 0.91114 0.91797 0.93028 0.93807 0.93535 0.96631 0.96784 0.93136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.35 8.68 37.16 0.32 -1.03 16 2 C -0.08 -0.70 2.07 -90.62 -0.19 -0.89 16 3 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 4 C -0.12 -1.05 4.94 -26.73 -0.13 -1.19 16 5 C -0.12 -1.02 5.92 -26.73 -0.16 -1.18 16 6 C -0.12 -1.19 5.66 -26.73 -0.15 -1.34 16 7 C -0.15 -1.52 4.35 -26.73 -0.12 -1.64 16 8 C 0.12 1.24 0.37 -131.59 -0.05 1.19 16 9 C -0.14 -1.49 7.89 37.16 0.29 -1.19 16 10 N -0.68 -8.33 5.19 -99.96 -0.52 -8.84 16 11 C 0.05 0.77 4.90 -3.82 -0.02 0.75 16 12 C -0.11 -2.00 5.47 -26.73 -0.15 -2.15 16 13 C -0.11 -2.28 5.15 -26.74 -0.14 -2.42 16 14 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 15 C -0.52 -15.11 9.11 -34.44 -0.31 -15.42 16 16 H 0.05 1.54 7.74 -52.49 -0.41 1.13 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.54 13.29 55.43 0.74 -26.80 16 19 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 20 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 23 H 0.07 0.77 7.60 -51.93 -0.39 0.37 16 24 H 0.05 0.52 6.43 -51.93 -0.33 0.18 16 25 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.66 6.57 -51.93 -0.34 0.32 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.67 6.76 -51.93 -0.35 0.32 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.75 6.41 -51.93 -0.33 0.42 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.73 6.43 -51.93 -0.33 0.39 16 35 H 0.06 0.64 6.41 -51.93 -0.33 0.31 16 36 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.34 4.13 5.18 -39.29 -0.20 3.92 16 38 H 0.03 0.40 6.30 -51.93 -0.33 0.08 16 39 H 0.07 1.03 6.31 -51.93 -0.33 0.70 16 40 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 41 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 42 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 44 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 45 H 0.01 0.39 8.14 -51.92 -0.42 -0.03 16 46 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 338.73 15.07 5.10 5.10 Total: -1.00 -29.72 338.73 -9.47 -39.19 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -8.74 Total: -1.10 kcal Atomic # 6 Polarization: -23.54 SS G_CDS: -1.03 Total: -24.57 kcal Atomic # 7 Polarization: -35.86 SS G_CDS: 0.22 Total: -35.65 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -29.72 -9.47 -39.19 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308690468.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.579 kcal (2) G-P(sol) polarization free energy of solvation -29.718 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds