Wall clock time and date at job start Mon Mar 30 2020 07:51:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.47000 * 2 1 4 4 C 1.50706 * 109.46859 * 240.00919 * 2 1 3 5 5 H 1.08000 * 119.99302 * 239.99789 * 4 2 1 6 6 C 1.37871 * 120.00436 * 59.72322 * 4 2 1 7 7 N 1.31515 * 119.99684 * 359.97438 * 6 4 2 8 8 Si 1.86800 * 120.00405 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47154 * 89.99418 * 8 6 4 10 10 H 1.48493 * 109.47010 * 209.99942 * 8 6 4 11 11 H 1.48502 * 109.46736 * 329.99638 * 8 6 4 12 12 N 1.46895 * 109.47514 * 120.00767 * 2 1 3 13 13 C 1.46902 * 110.99778 * 274.99856 * 12 2 1 14 14 C 1.52999 * 109.47223 * 274.99608 * 13 12 2 15 15 C 1.52999 * 109.47168 * 180.02562 * 14 13 12 16 16 C 1.52998 * 109.47320 * 60.00057 * 15 14 13 17 17 C 1.52999 * 109.47320 * 180.02562 * 16 15 14 18 18 C 1.53002 * 109.46937 * 180.02562 * 17 16 15 19 19 C 1.52999 * 109.47168 * 299.99943 * 17 16 15 20 20 C 1.52989 * 109.47052 * 60.00233 * 17 16 15 21 21 C 1.52999 * 109.47286 * 300.00255 * 16 15 14 22 22 C 1.53002 * 109.46877 * 155.00030 * 13 12 2 23 23 H 1.09002 * 109.46917 * 299.99220 * 1 2 3 24 24 H 1.08995 * 109.47505 * 59.99513 * 1 2 3 25 25 H 1.09001 * 109.47000 * 179.97438 * 1 2 3 26 26 H 0.97004 * 120.00247 * 180.02562 * 7 6 4 27 27 H 1.00900 * 111.00155 * 151.04364 * 12 2 1 28 28 H 1.09001 * 109.46970 * 34.99965 * 13 12 2 29 29 H 1.08993 * 109.47547 * 300.00371 * 14 13 12 30 30 H 1.08999 * 109.46672 * 60.00157 * 14 13 12 31 31 H 1.09001 * 109.46966 * 300.00320 * 15 14 13 32 32 H 1.09002 * 109.47247 * 180.02562 * 15 14 13 33 33 H 1.09006 * 109.46534 * 59.99923 * 16 15 14 34 34 H 1.09001 * 109.47373 * 60.00151 * 18 17 16 35 35 H 1.08998 * 109.47075 * 180.02562 * 18 17 16 36 36 H 1.09002 * 109.47040 * 299.99989 * 18 17 16 37 37 H 1.08999 * 109.46672 * 60.00117 * 19 17 16 38 38 H 1.08998 * 109.46855 * 179.97438 * 19 17 16 39 39 H 1.09006 * 109.47377 * 300.00500 * 19 17 16 40 40 H 1.09003 * 109.47383 * 60.00372 * 20 17 16 41 41 H 1.08998 * 109.47227 * 179.97438 * 20 17 16 42 42 H 1.08999 * 109.47241 * 300.00161 * 20 17 16 43 43 H 1.09001 * 109.47125 * 299.99813 * 21 16 15 44 44 H 1.09002 * 109.47490 * 179.97438 * 21 16 15 45 45 H 1.09003 * 109.47283 * 299.99526 * 22 13 12 46 46 H 1.09001 * 109.47373 * 60.00182 * 22 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7102 -1.2306 5 1 2.6532 -1.5883 -1.1316 6 6 1.6945 -0.2424 -2.4828 7 7 0.9335 0.8234 -2.6033 8 14 2.3165 -1.1232 -4.0082 9 1 1.3411 -2.1690 -4.4082 10 1 2.4753 -0.1452 -5.1142 11 1 3.6277 -1.7556 -3.7145 12 7 2.0197 -0.6926 1.1993 13 6 2.0826 0.2224 2.3468 14 6 3.4112 0.9807 2.3224 15 6 3.4769 1.9332 3.5179 16 6 3.3718 1.1303 4.8160 17 6 3.4368 2.0829 6.0116 18 6 3.3323 1.2799 7.3097 19 6 4.7652 2.8416 5.9874 20 6 2.2787 3.0795 5.9331 21 6 2.0432 0.3720 4.8406 22 6 1.9772 -0.5801 3.6452 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3633 -1.0277 -0.0005 26 1 0.6955 1.1524 -3.4842 27 1 2.9173 -1.1206 1.0285 28 1 1.2577 0.9327 2.2907 29 1 4.2360 0.2704 2.3784 30 1 3.4862 1.5523 1.3973 31 1 2.6520 2.6435 3.4622 32 1 4.4233 2.4737 3.5002 33 1 4.1967 0.4199 4.8716 34 1 4.1577 0.5701 7.3654 35 1 3.3782 1.9585 8.1614 36 1 2.3861 0.7390 7.3272 37 1 4.8400 3.4136 5.0626 38 1 4.8113 3.5206 6.8389 39 1 5.5904 2.1316 6.0432 40 1 1.3323 2.5389 5.9505 41 1 2.3248 3.7578 6.7851 42 1 2.3536 3.6514 5.0083 43 1 1.2183 1.0823 4.7849 44 1 1.9684 -0.2004 5.7652 45 1 1.0306 -1.1203 3.6628 46 1 2.8021 -1.2904 3.7014 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309387333.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:51:42 Heat of formation + Delta-G solvation = -41.984906 kcal Electronic energy + Delta-G solvation = -19995.325021 eV Core-core repulsion = 17304.004547 eV Total energy + Delta-G solvation = -2691.320474 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.65274 -36.71211 -34.21032 -31.97108 -30.64210 -29.11223 -27.37252 -27.26262 -26.36459 -25.06754 -22.23632 -21.95372 -19.83944 -19.49679 -18.25621 -16.48089 -15.49442 -14.96352 -14.52437 -14.22238 -14.11294 -13.97994 -13.63910 -13.29034 -12.95470 -12.69596 -12.30113 -12.15856 -11.88583 -11.79800 -11.64230 -11.51155 -11.32747 -11.06733 -10.96203 -10.90012 -10.69444 -10.56714 -10.34412 -10.29577 -10.12005 -10.06657 -9.98493 -9.64198 -9.44953 -8.77761 -8.43633 -7.13247 -5.99261 -4.05379 3.31424 3.37680 3.40764 4.42562 4.66063 4.73662 4.78760 5.08852 5.19388 5.28201 5.32955 5.46768 5.52979 5.55683 5.61721 5.68011 5.69962 5.75676 5.80705 5.87601 5.92624 5.94585 5.97688 6.02909 6.11573 6.18808 6.20533 6.26178 6.44992 6.48846 6.50439 6.53474 6.63368 6.82854 6.85547 6.96782 7.21226 7.30780 7.59577 7.82559 7.96253 8.32900 8.48343 8.75975 9.06967 9.60517 11.06896 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.040307 B = 0.004351 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 694.500977 B = 6434.002501 C = 6547.318496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.212 3.788 3 H 0.001 0.999 4 C -0.517 4.517 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.891 5.891 8 Si 0.895 3.105 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.686 5.686 13 C 0.091 3.909 14 C -0.146 4.146 15 C -0.112 4.112 16 C -0.073 4.073 17 C -0.065 4.065 18 C -0.142 4.142 19 C -0.143 4.143 20 C -0.145 4.145 21 C -0.115 4.115 22 C -0.105 4.105 23 H 0.003 0.997 24 H 0.079 0.921 25 H 0.030 0.970 26 H 0.260 0.740 27 H 0.329 0.671 28 H 0.067 0.933 29 H 0.055 0.945 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.049 0.951 39 H 0.052 0.948 40 H 0.058 0.942 41 H 0.048 0.952 42 H 0.058 0.942 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.062 0.938 46 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.712 3.238 17.072 18.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.104 3.896 3 H 0.019 0.981 4 C -0.555 4.555 5 H 0.076 0.924 6 C -0.140 4.140 7 N -0.530 5.530 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.315 5.315 13 C -0.020 4.020 14 C -0.185 4.185 15 C -0.150 4.150 16 C -0.091 4.091 17 C -0.065 4.065 18 C -0.199 4.199 19 C -0.200 4.200 20 C -0.203 4.203 21 C -0.153 4.153 22 C -0.143 4.143 23 H 0.022 0.978 24 H 0.098 0.902 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.146 0.854 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.077 0.923 37 H 0.077 0.923 38 H 0.068 0.932 39 H 0.071 0.929 40 H 0.077 0.923 41 H 0.067 0.933 42 H 0.077 0.923 43 H 0.080 0.920 44 H 0.077 0.923 45 H 0.081 0.919 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 3.992 3.099 17.069 17.802 hybrid contribution 1.087 0.135 -1.170 1.603 sum 5.080 3.234 15.899 17.001 Atomic orbital electron populations 1.21724 0.98104 0.99212 0.99212 1.19079 0.92387 0.92404 0.85702 0.98129 1.21291 1.31191 1.12457 0.90576 0.92351 1.24912 0.95095 0.95009 0.98988 1.69901 1.36539 1.23171 1.23340 0.86548 0.79208 0.79346 0.82587 1.20661 1.21317 1.19975 1.60805 1.31905 1.32733 1.06069 1.21501 0.95450 0.93429 0.91653 1.22276 0.99319 0.98925 0.98008 1.21640 1.01309 0.97954 0.94051 1.21159 0.98082 0.96321 0.93566 1.20547 0.95364 0.95458 0.95160 1.21921 1.01862 0.99692 0.96463 1.21927 0.96593 0.99911 1.01587 1.21981 0.98126 0.98663 1.01484 1.21689 0.97148 0.98354 0.98099 1.21502 1.01727 0.97513 0.93547 0.97818 0.90191 0.95120 0.93012 0.85389 0.91466 0.92598 0.91877 0.91962 0.92497 0.91623 0.92922 0.93194 0.92299 0.92282 0.93182 0.92921 0.92282 0.93335 0.92258 0.91969 0.92307 0.91878 0.92728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.16 9.17 37.16 0.34 -2.82 16 2 C 0.21 5.42 2.42 -68.87 -0.17 5.26 16 3 H 0.00 0.03 7.11 -51.93 -0.37 -0.34 16 4 C -0.52 -14.33 8.59 -34.44 -0.30 -14.63 16 5 H 0.06 1.60 7.62 -52.49 -0.40 1.20 16 6 C 0.06 1.72 5.30 -17.82 -0.09 1.62 16 7 N -0.89 -25.71 11.30 55.43 0.63 -25.08 16 8 Si 0.90 21.48 29.54 -169.99 -5.02 16.46 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 12 N -0.69 -14.79 6.05 -100.95 -0.61 -15.41 16 13 C 0.09 1.63 2.28 -67.71 -0.15 1.47 16 14 C -0.15 -2.39 5.16 -26.73 -0.14 -2.53 16 15 C -0.11 -1.49 4.50 -26.73 -0.12 -1.61 16 16 C -0.07 -0.86 1.55 -90.62 -0.14 -1.00 16 17 C -0.07 -0.66 0.57 -154.51 -0.09 -0.74 16 18 C -0.14 -1.30 8.12 37.16 0.30 -1.00 16 19 C -0.14 -1.36 8.12 37.16 0.30 -1.06 16 20 C -0.15 -1.46 7.77 37.15 0.29 -1.17 16 21 C -0.12 -1.43 4.50 -26.75 -0.12 -1.55 16 22 C -0.10 -1.58 5.53 -26.75 -0.15 -1.73 16 23 H 0.00 0.07 7.43 -51.93 -0.39 -0.32 16 24 H 0.08 2.21 6.05 -51.93 -0.31 1.89 16 25 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 27 H 0.33 7.01 7.96 -39.29 -0.31 6.70 16 28 H 0.07 1.32 7.11 -51.93 -0.37 0.95 16 29 H 0.06 0.89 8.13 -51.93 -0.42 0.47 16 30 H 0.06 1.18 7.43 -51.93 -0.39 0.80 16 31 H 0.06 0.85 6.43 -51.93 -0.33 0.52 16 32 H 0.06 0.71 6.43 -51.93 -0.33 0.38 16 33 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.54 6.43 -51.93 -0.33 0.20 16 37 H 0.06 0.58 6.43 -51.93 -0.33 0.25 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.06 0.60 6.43 -51.93 -0.33 0.27 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.63 6.43 -51.93 -0.33 0.29 16 43 H 0.06 0.79 6.43 -51.93 -0.33 0.46 16 44 H 0.06 0.66 6.43 -51.93 -0.33 0.33 16 45 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 LS Contribution 333.64 15.07 5.03 5.03 Total: -1.00 -27.86 333.64 -8.78 -36.64 By element: Atomic # 1 Polarization: 12.42 SS G_CDS: -8.57 Total: 3.85 kcal Atomic # 6 Polarization: -21.26 SS G_CDS: -0.23 Total: -21.49 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.02 Total: -40.49 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.02 Total: 16.46 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.86 -8.78 -36.64 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309387333.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.348 kcal (2) G-P(sol) polarization free energy of solvation -27.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds