Wall clock time and date at job start Mon Mar 30 2020 07:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08992 * 109.47229 * 2 1 4 4 N 1.46900 * 109.47122 * 120.00615 * 2 1 3 5 5 C 1.46906 * 110.99566 * 274.99503 * 4 2 1 6 6 C 1.52998 * 109.47100 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47386 * 180.02562 * 6 5 4 8 8 H 1.08003 * 119.99707 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00327 * 180.02562 * 7 6 5 10 10 N 1.31523 * 119.99944 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00321 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47440 * 89.99740 * 11 9 7 13 13 H 1.48501 * 109.47332 * 210.00197 * 11 9 7 14 14 H 1.48501 * 109.46708 * 330.00139 * 11 9 7 15 15 C 1.53341 * 109.46916 * 239.99932 * 2 1 3 16 16 H 1.08702 * 108.89713 * 300.00001 * 15 2 1 17 17 C 1.52767 * 109.14127 * 60.53951 * 15 2 1 18 18 C 1.52232 * 110.76630 * 180.13830 * 17 15 2 19 19 H 1.11045 * 107.10064 * 189.64932 * 18 17 15 20 20 C 1.52829 * 110.62136 * 73.68723 * 18 17 15 21 21 C 1.51635 * 112.96362 * 307.76593 * 18 17 15 22 22 C 1.51644 * 115.44532 * 43.70947 * 21 18 17 23 23 H 1.11028 * 107.46710 * 198.33937 * 22 21 18 24 24 C 1.52828 * 111.59566 * 81.62657 * 22 21 18 25 25 C 1.52234 * 112.94025 * 316.25462 * 22 21 18 26 26 H 1.09001 * 109.47182 * 59.99747 * 1 2 3 27 27 H 1.09002 * 109.47230 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47281 * 299.99627 * 1 2 3 29 29 H 1.00899 * 111.00488 * 38.94917 * 4 2 1 30 30 H 1.08993 * 109.47601 * 300.00363 * 5 4 2 31 31 H 1.08995 * 109.46885 * 60.00449 * 5 4 2 32 32 H 1.09006 * 109.47378 * 300.00337 * 6 5 4 33 33 H 1.09003 * 109.47411 * 60.00062 * 6 5 4 34 34 H 0.97000 * 120.00029 * 179.97438 * 10 9 7 35 35 H 1.09335 * 109.18520 * 300.84866 * 17 15 2 36 36 H 1.09317 * 109.21741 * 59.37505 * 17 15 2 37 37 H 1.09003 * 109.47381 * 59.99546 * 20 18 17 38 38 H 1.09002 * 109.46729 * 179.97438 * 20 18 17 39 39 H 1.08998 * 109.46696 * 299.99669 * 20 18 17 40 40 H 1.10192 * 108.75671 * 166.23180 * 21 18 17 41 41 H 1.10223 * 108.69857 * 281.32063 * 21 18 17 42 42 H 1.08995 * 109.47438 * 60.00494 * 24 22 21 43 43 H 1.09003 * 109.46599 * 179.97438 * 24 22 21 44 44 H 1.08998 * 109.47290 * 299.99701 * 24 22 21 45 45 H 1.09317 * 109.56116 * 291.76683 * 25 22 21 46 46 H 1.09330 * 109.55185 * 172.81191 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5962 -0.5330 3.5741 7 6 2.6602 0.4055 4.7514 8 1 2.3635 1.4376 4.6360 9 6 3.0972 -0.0533 5.9759 10 7 3.4580 -1.3102 6.1166 11 14 3.1758 1.1099 7.4354 12 1 1.8822 1.0782 8.1640 13 1 4.2683 0.6864 8.3478 14 1 3.4394 2.4900 6.9548 15 6 2.0410 -0.7229 -1.2520 16 1 1.6736 -1.7459 -1.2426 17 6 1.5388 0.0109 -2.4942 18 6 2.0231 -0.6794 -3.7616 19 1 1.7791 -0.0087 -4.6124 20 6 1.2556 -1.9806 -3.9927 21 6 3.5225 -0.9055 -3.7761 22 6 4.1162 -1.4205 -2.4793 23 1 5.2085 -1.2238 -2.5116 24 6 3.9449 -2.9331 -2.3438 25 6 3.5686 -0.7068 -1.2512 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.4495 -1.4980 1.4100 30 1 2.7588 1.0461 2.1182 31 1 1.0871 0.6161 2.5525 32 1 1.9202 -1.3569 3.8030 33 1 3.5917 -0.9264 3.3682 34 1 3.7658 -1.6329 6.9780 35 1 0.4456 0.0298 -2.4830 36 1 1.9041 1.0411 -2.4759 37 1 0.1925 -1.7624 -4.0939 38 1 1.6165 -2.4584 -4.9036 39 1 1.4104 -2.6489 -3.1457 40 1 3.7661 -1.6146 -4.5836 41 1 4.0201 0.0417 -4.0408 42 1 4.4463 -3.4314 -3.1735 43 1 4.3830 -3.2655 -1.4027 44 1 2.8837 -3.1814 -2.3588 45 1 3.9175 0.3292 -1.2441 46 1 3.9328 -1.2023 -0.3473 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309464369.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:46 Heat of formation + Delta-G solvation = -51.251366 kcal Electronic energy + Delta-G solvation = -19647.892562 eV Core-core repulsion = 16956.170264 eV Total energy + Delta-G solvation = -2691.722298 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.55207 -36.52446 -33.52031 -33.02130 -31.86962 -29.44733 -27.81769 -27.31467 -25.95472 -24.23675 -22.89033 -21.05507 -20.63969 -20.02960 -17.87807 -16.28892 -15.97372 -14.76058 -14.67495 -14.39023 -14.24654 -13.99501 -13.96306 -13.54558 -13.33847 -12.72752 -12.51322 -12.45060 -12.29273 -12.04769 -11.92271 -11.36906 -11.18112 -11.15220 -10.99947 -10.94724 -10.91036 -10.68266 -10.59427 -10.52908 -10.04633 -9.98209 -9.81495 -9.65012 -9.25928 -9.09009 -8.32546 -7.66445 -5.97182 -3.99486 3.33370 3.39558 3.43047 4.44915 4.59421 4.66683 4.69036 4.92092 5.09170 5.20660 5.24939 5.30328 5.38752 5.40511 5.49565 5.52935 5.64580 5.65335 5.67788 5.75236 5.83969 5.89716 5.94206 6.03701 6.05951 6.06521 6.13719 6.18642 6.21833 6.29285 6.40156 6.41181 6.46752 6.49159 6.62667 6.71095 6.81361 7.04235 7.58034 7.78747 7.88710 8.04633 8.13996 8.47684 9.08022 9.64149 11.14236 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.034904 B = 0.003993 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.011544 B = 7011.428415 C = 7385.624733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.084 3.916 3 H 0.070 0.930 4 N -0.683 5.683 5 C 0.067 3.933 6 C 0.026 3.974 7 C -0.520 4.520 8 H 0.053 0.947 9 C 0.058 3.942 10 N -0.894 5.894 11 Si 0.891 3.109 12 H -0.281 1.281 13 H -0.286 1.286 14 H -0.274 1.274 15 C -0.067 4.067 16 H 0.069 0.931 17 C -0.110 4.110 18 C -0.082 4.082 19 H 0.054 0.946 20 C -0.148 4.148 21 C -0.101 4.101 22 C -0.086 4.086 23 H 0.055 0.945 24 C -0.147 4.147 25 C -0.099 4.099 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.334 0.666 30 H 0.055 0.945 31 H 0.013 0.987 32 H 0.012 0.988 33 H 0.025 0.975 34 H 0.260 0.740 35 H 0.061 0.939 36 H 0.057 0.943 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.061 0.939 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.045 0.955 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.051 0.949 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.252 -0.397 -20.504 20.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.027 4.027 3 H 0.088 0.912 4 N -0.313 5.313 5 C -0.061 4.061 6 C -0.012 4.012 7 C -0.559 4.559 8 H 0.071 0.929 9 C -0.143 4.143 10 N -0.533 5.533 11 Si 0.719 3.281 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.086 4.086 16 H 0.087 0.913 17 C -0.148 4.148 18 C -0.100 4.100 19 H 0.072 0.928 20 C -0.205 4.205 21 C -0.139 4.139 22 C -0.105 4.105 23 H 0.073 0.927 24 C -0.204 4.204 25 C -0.137 4.137 26 H 0.075 0.925 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.152 0.848 30 H 0.074 0.926 31 H 0.031 0.969 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.070 0.930 35 H 0.079 0.921 36 H 0.076 0.924 37 H 0.069 0.931 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.072 0.928 41 H 0.070 0.930 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -2.491 -0.418 -20.538 20.693 hybrid contribution -0.924 0.753 1.089 1.614 sum -3.415 0.335 -19.450 19.750 Atomic orbital electron populations 1.22558 0.98207 1.01711 1.01665 1.21679 0.91765 0.97913 0.91308 0.91195 1.60652 1.56340 1.10076 1.04212 1.22145 0.97963 0.95266 0.90716 1.19060 0.96941 0.95236 0.89953 1.21190 1.43744 0.96413 0.94591 0.92855 1.24997 0.95431 0.95085 0.98832 1.69978 1.44538 1.14382 1.24394 0.86606 0.77631 0.81227 0.82597 1.20739 1.21200 1.19901 1.20945 0.95885 0.99280 0.92538 0.91263 1.21532 1.00214 0.99010 0.93997 1.20751 0.94796 0.96870 0.97625 0.92799 1.21932 0.99437 0.97697 1.01471 1.21196 0.94757 1.00720 0.97196 1.20812 0.99377 0.95477 0.94785 0.92668 1.21909 1.01906 0.95358 1.01243 1.21333 0.94775 1.00132 0.97435 0.92493 0.92793 0.92793 0.84816 0.92603 0.96852 0.96935 0.95709 0.93040 0.92086 0.92414 0.93119 0.93173 0.92002 0.92774 0.93009 0.93588 0.92441 0.92398 0.93012 0.89940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.35 8.81 37.15 0.33 -2.03 16 2 C 0.08 1.20 2.14 -67.54 -0.14 1.05 16 3 H 0.07 1.06 7.80 -51.93 -0.40 0.66 16 4 N -0.68 -11.96 5.46 -106.55 -0.58 -12.55 16 5 C 0.07 1.42 5.42 -3.82 -0.02 1.40 16 6 C 0.03 0.67 5.23 -27.88 -0.15 0.53 16 7 C -0.52 -14.95 9.11 -34.44 -0.31 -15.26 16 8 H 0.05 1.49 7.74 -52.48 -0.41 1.08 16 9 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 10 N -0.89 -27.18 13.29 55.43 0.74 -26.44 16 11 Si 0.89 21.88 29.54 -169.99 -5.02 16.86 16 12 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 14 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 15 C -0.07 -0.83 1.80 -90.68 -0.16 -0.99 16 16 H 0.07 0.88 6.38 -52.10 -0.33 0.55 16 17 C -0.11 -1.16 4.28 -27.24 -0.12 -1.27 16 18 C -0.08 -0.78 2.62 -91.79 -0.24 -1.02 16 19 H 0.05 0.48 8.29 -50.75 -0.42 0.06 16 20 C -0.15 -1.33 8.89 37.07 0.33 -1.00 16 21 C -0.10 -0.99 4.78 -28.11 -0.13 -1.13 16 22 C -0.09 -0.95 2.62 -91.79 -0.24 -1.19 16 23 H 0.05 0.62 8.29 -50.76 -0.42 0.19 16 24 C -0.15 -1.58 8.91 37.07 0.33 -1.25 16 25 C -0.10 -1.29 4.46 -27.24 -0.12 -1.41 16 26 H 0.06 0.64 6.39 -51.93 -0.33 0.31 16 27 H 0.05 0.67 8.13 -51.93 -0.42 0.25 16 28 H 0.05 0.76 7.45 -51.93 -0.39 0.37 16 29 H 0.33 5.79 8.47 -39.29 -0.33 5.46 16 30 H 0.06 1.20 8.05 -51.93 -0.42 0.78 16 31 H 0.01 0.28 7.44 -51.93 -0.39 -0.11 16 32 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 33 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 35 H 0.06 0.62 6.32 -51.74 -0.33 0.29 16 36 H 0.06 0.62 8.17 -51.75 -0.42 0.20 16 37 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.05 0.41 8.06 -51.93 -0.42 -0.01 16 39 H 0.06 0.59 4.86 -51.93 -0.25 0.34 16 40 H 0.05 0.49 7.92 -51.25 -0.41 0.09 16 41 H 0.05 0.50 8.24 -51.23 -0.42 0.08 16 42 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 43 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 44 H 0.06 0.61 4.94 -51.93 -0.26 0.36 16 45 H 0.05 0.70 8.17 -51.75 -0.42 0.28 16 46 H 0.08 1.27 7.50 -51.74 -0.39 0.89 16 LS Contribution 341.72 15.07 5.15 5.15 Total: -1.00 -29.11 341.72 -9.29 -38.41 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -8.83 Total: 0.57 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: -0.75 Total: -21.99 kcal Atomic # 7 Polarization: -39.14 SS G_CDS: 0.15 Total: -38.99 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -5.02 Total: 16.86 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -29.11 -9.29 -38.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309464369.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.844 kcal (2) G-P(sol) polarization free energy of solvation -29.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds