Wall clock time and date at job start Mon Mar 30 2020 07:07:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.08992 * 109.47229 * 2 1 4 4 N 1.46900 * 109.47122 * 120.00615 * 2 1 3 5 5 C 1.46906 * 110.99566 * 274.99503 * 4 2 1 6 6 C 1.52998 * 109.47100 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47386 * 180.02562 * 6 5 4 8 8 H 1.08003 * 119.99707 * 0.02562 * 7 6 5 9 9 C 1.37872 * 120.00327 * 180.02562 * 7 6 5 10 10 N 1.31523 * 119.99944 * 359.97438 * 9 7 6 11 11 Si 1.86799 * 120.00321 * 180.02562 * 9 7 6 12 12 H 1.48504 * 109.47440 * 89.99740 * 11 9 7 13 13 H 1.48501 * 109.47332 * 210.00197 * 11 9 7 14 14 H 1.48501 * 109.46708 * 330.00139 * 11 9 7 15 15 C 1.53341 * 109.46916 * 239.99932 * 2 1 3 16 16 H 1.08702 * 108.89713 * 300.00001 * 15 2 1 17 17 C 1.52767 * 109.14127 * 60.53951 * 15 2 1 18 18 C 1.52232 * 110.76630 * 180.13830 * 17 15 2 19 19 H 1.11045 * 107.10064 * 189.64932 * 18 17 15 20 20 C 1.52829 * 110.62136 * 73.68723 * 18 17 15 21 21 C 1.51635 * 112.96362 * 307.76593 * 18 17 15 22 22 C 1.51644 * 115.44532 * 43.70947 * 21 18 17 23 23 H 1.11028 * 107.46710 * 198.33937 * 22 21 18 24 24 C 1.52828 * 111.59566 * 81.62657 * 22 21 18 25 25 C 1.52234 * 112.94025 * 316.25462 * 22 21 18 26 26 H 1.09001 * 109.47182 * 59.99747 * 1 2 3 27 27 H 1.09002 * 109.47230 * 179.97438 * 1 2 3 28 28 H 1.09007 * 109.47281 * 299.99627 * 1 2 3 29 29 H 1.00899 * 111.00488 * 38.94917 * 4 2 1 30 30 H 1.08993 * 109.47601 * 300.00363 * 5 4 2 31 31 H 1.08995 * 109.46885 * 60.00449 * 5 4 2 32 32 H 1.09006 * 109.47378 * 300.00337 * 6 5 4 33 33 H 1.09003 * 109.47411 * 60.00062 * 6 5 4 34 34 H 0.97000 * 120.00029 * 179.97438 * 10 9 7 35 35 H 1.09335 * 109.18520 * 300.84866 * 17 15 2 36 36 H 1.09317 * 109.21741 * 59.37505 * 17 15 2 37 37 H 1.09003 * 109.47381 * 59.99546 * 20 18 17 38 38 H 1.09002 * 109.46729 * 179.97438 * 20 18 17 39 39 H 1.08998 * 109.46696 * 299.99669 * 20 18 17 40 40 H 1.10192 * 108.75671 * 166.23180 * 21 18 17 41 41 H 1.10223 * 108.69857 * 281.32063 * 21 18 17 42 42 H 1.08995 * 109.47438 * 60.00494 * 24 22 21 43 43 H 1.09003 * 109.46599 * 179.97438 * 24 22 21 44 44 H 1.08998 * 109.47290 * 299.99701 * 24 22 21 45 45 H 1.09317 * 109.56116 * 291.76683 * 25 22 21 46 46 H 1.09330 * 109.55185 * 172.81191 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0196 -0.6926 1.1994 5 6 2.0825 0.2225 2.3469 6 6 2.5962 -0.5330 3.5741 7 6 2.6602 0.4055 4.7514 8 1 2.3635 1.4376 4.6360 9 6 3.0972 -0.0533 5.9759 10 7 3.4580 -1.3102 6.1166 11 14 3.1758 1.1099 7.4354 12 1 1.8822 1.0782 8.1640 13 1 4.2683 0.6864 8.3478 14 1 3.4394 2.4900 6.9548 15 6 2.0410 -0.7229 -1.2520 16 1 1.6736 -1.7459 -1.2426 17 6 1.5388 0.0109 -2.4942 18 6 2.0231 -0.6794 -3.7616 19 1 1.7791 -0.0087 -4.6124 20 6 1.2556 -1.9806 -3.9927 21 6 3.5225 -0.9055 -3.7761 22 6 4.1162 -1.4205 -2.4793 23 1 5.2085 -1.2238 -2.5116 24 6 3.9449 -2.9331 -2.3438 25 6 3.5686 -0.7068 -1.2512 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8901 29 1 1.4495 -1.4980 1.4100 30 1 2.7588 1.0461 2.1182 31 1 1.0871 0.6161 2.5525 32 1 1.9202 -1.3569 3.8030 33 1 3.5917 -0.9264 3.3682 34 1 3.7658 -1.6329 6.9780 35 1 0.4456 0.0298 -2.4830 36 1 1.9041 1.0411 -2.4759 37 1 0.1925 -1.7624 -4.0939 38 1 1.6165 -2.4584 -4.9036 39 1 1.4104 -2.6489 -3.1457 40 1 3.7661 -1.6146 -4.5836 41 1 4.0201 0.0417 -4.0408 42 1 4.4463 -3.4314 -3.1735 43 1 4.3830 -3.2655 -1.4027 44 1 2.8837 -3.1814 -2.3588 45 1 3.9175 0.3292 -1.2441 46 1 3.9328 -1.2023 -0.3473 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309464369.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:45 Heat of formation + Delta-G solvation = -66.757491 kcal Electronic energy + Delta-G solvation = -19648.564958 eV Core-core repulsion = 16956.170264 eV Total energy + Delta-G solvation = -2692.394694 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.52211 -37.85019 -35.43047 -33.92717 -33.46707 -30.89727 -29.29373 -28.08683 -26.94908 -26.01002 -24.13874 -22.45947 -21.91180 -21.24446 -18.81631 -18.46356 -17.00039 -16.49109 -16.11743 -15.89421 -15.16386 -15.03828 -14.91076 -14.82511 -14.36784 -14.18885 -13.92536 -13.73471 -13.44087 -13.20175 -13.06028 -12.85678 -12.82380 -12.50239 -12.24066 -12.14468 -12.06558 -11.98221 -11.80370 -11.58903 -11.55813 -11.41608 -11.27423 -10.90218 -10.67959 -10.56861 -10.52062 -9.12365 -8.20435 -6.32007 1.39459 1.41192 1.52385 2.40211 3.12823 3.37198 3.73776 3.83523 3.94097 4.12046 4.31260 4.36522 4.40353 4.43121 4.48850 4.52559 4.54817 4.64444 4.74850 4.75818 4.83839 4.90376 4.94848 5.01081 5.04059 5.08994 5.13756 5.17081 5.20448 5.24717 5.26606 5.32481 5.38316 5.45480 5.52092 5.59269 5.64537 5.68530 5.71815 5.77714 5.82360 6.17892 6.36443 6.62823 6.85601 7.37286 8.91694 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.034904 B = 0.003993 C = 0.003790 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.011544 B = 7011.428415 C = 7385.624733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.083 3.917 3 H 0.061 0.939 4 N -0.687 5.687 5 C 0.088 3.912 6 C 0.033 3.967 7 C -0.545 4.545 8 H 0.058 0.942 9 C 0.001 3.999 10 N -0.932 5.932 11 Si 0.966 3.034 12 H -0.271 1.271 13 H -0.281 1.281 14 H -0.264 1.264 15 C -0.058 4.058 16 H 0.068 0.932 17 C -0.106 4.106 18 C -0.082 4.082 19 H 0.068 0.932 20 C -0.147 4.147 21 C -0.100 4.100 22 C -0.083 4.083 23 H 0.052 0.948 24 C -0.145 4.145 25 C -0.097 4.097 26 H 0.079 0.921 27 H 0.059 0.941 28 H 0.039 0.961 29 H 0.336 0.664 30 H 0.051 0.949 31 H 0.016 0.984 32 H -0.010 1.010 33 H -0.007 1.007 34 H 0.264 0.736 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.057 0.943 38 H 0.059 0.941 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.040 0.960 44 H 0.060 0.940 45 H 0.042 0.958 46 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.138 0.541 -21.869 22.264 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.027 4.027 3 H 0.080 0.920 4 N -0.317 5.317 5 C -0.041 4.041 6 C -0.004 4.004 7 C -0.583 4.583 8 H 0.077 0.923 9 C -0.197 4.197 10 N -0.572 5.572 11 Si 0.791 3.209 12 H -0.197 1.197 13 H -0.206 1.206 14 H -0.188 1.188 15 C -0.077 4.077 16 H 0.086 0.914 17 C -0.143 4.143 18 C -0.100 4.100 19 H 0.086 0.914 20 C -0.204 4.204 21 C -0.138 4.138 22 C -0.102 4.102 23 H 0.070 0.930 24 C -0.202 4.202 25 C -0.134 4.134 26 H 0.098 0.902 27 H 0.078 0.922 28 H 0.058 0.942 29 H 0.153 0.847 30 H 0.070 0.930 31 H 0.034 0.966 32 H 0.008 0.992 33 H 0.011 0.989 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.076 0.924 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.073 0.927 42 H 0.079 0.921 43 H 0.059 0.941 44 H 0.079 0.921 45 H 0.061 0.939 46 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.387 0.524 -21.928 22.194 hybrid contribution -0.622 0.421 1.485 1.664 sum -4.009 0.945 -20.442 20.853 Atomic orbital electron populations 1.22476 0.96597 1.02269 1.02103 1.21778 0.93063 0.97343 0.90487 0.92033 1.60573 1.57327 1.09757 1.04016 1.21726 0.97485 0.94815 0.90052 1.18905 0.94773 0.94745 0.91997 1.21617 1.44010 0.96998 0.95722 0.92341 1.25970 0.94713 0.96854 1.02139 1.70114 1.45194 1.16439 1.25408 0.85430 0.78013 0.79067 0.78426 1.19666 1.20642 1.18786 1.20852 0.95141 0.99189 0.92489 0.91398 1.21508 1.00786 0.98698 0.93346 1.20750 0.94479 0.97445 0.97333 0.91393 1.21922 0.99831 0.97137 1.01525 1.21180 0.95061 1.01152 0.96365 1.20784 0.99229 0.95508 0.94667 0.92990 1.21888 1.02125 0.95181 1.01012 1.21270 0.95516 0.99417 0.97223 0.90172 0.92181 0.94190 0.84675 0.93046 0.96605 0.99168 0.98895 0.92750 0.91045 0.92539 0.92437 0.92233 0.92930 0.91509 0.92716 0.92093 0.94054 0.92140 0.93882 0.93080 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.27 8.81 71.98 0.63 -3.63 16 2 C 0.08 2.34 2.14 45.03 0.10 2.43 16 3 H 0.06 1.85 7.80 -2.39 -0.02 1.83 16 4 N -0.69 -24.62 5.46 -491.00 -2.68 -27.30 16 5 C 0.09 3.82 5.42 86.30 0.47 4.29 16 6 C 0.03 1.82 5.23 29.85 0.16 1.98 16 7 C -0.55 -31.84 9.11 25.60 0.23 -31.61 16 8 H 0.06 3.28 7.74 -2.91 -0.02 3.25 16 9 C 0.00 0.07 5.46 84.65 0.46 0.53 16 10 N -0.93 -57.79 13.29 21.45 0.28 -57.50 16 11 Si 0.97 44.93 29.54 68.60 2.03 46.96 16 12 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 13 H -0.28 -12.74 7.11 99.48 0.71 -12.04 16 14 H -0.26 -11.72 7.11 99.48 0.71 -11.02 16 15 C -0.06 -1.37 1.80 -10.83 -0.02 -1.39 16 16 H 0.07 1.66 6.38 -2.54 -0.02 1.64 16 17 C -0.11 -1.99 4.28 30.26 0.13 -1.86 16 18 C -0.08 -1.33 2.62 -11.55 -0.03 -1.36 16 19 H 0.07 0.98 8.29 -1.28 -0.01 0.97 16 20 C -0.15 -2.22 8.89 71.93 0.64 -1.58 16 21 C -0.10 -1.74 4.78 29.70 0.14 -1.60 16 22 C -0.08 -1.79 2.62 -11.55 -0.03 -1.82 16 23 H 0.05 1.14 8.29 -1.29 -0.01 1.13 16 24 C -0.14 -3.01 8.91 71.93 0.64 -2.37 16 25 C -0.10 -2.54 4.46 30.26 0.13 -2.40 16 26 H 0.08 1.58 6.39 -2.39 -0.02 1.57 16 27 H 0.06 1.39 8.13 -2.39 -0.02 1.37 16 28 H 0.04 1.08 7.45 -2.38 -0.02 1.06 16 29 H 0.34 11.89 8.47 -89.69 -0.76 11.13 16 30 H 0.05 2.26 8.05 -2.39 -0.02 2.24 16 31 H 0.02 0.67 7.44 -2.39 -0.02 0.66 16 32 H -0.01 -0.59 8.14 -2.38 -0.02 -0.61 16 33 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 34 H 0.26 15.31 8.31 -92.71 -0.77 14.54 16 35 H 0.07 1.22 6.32 -2.21 -0.01 1.21 16 36 H 0.06 1.10 8.17 -2.22 -0.02 1.08 16 37 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.06 0.79 8.06 -2.39 -0.02 0.77 16 39 H 0.05 0.89 4.86 -2.39 -0.01 0.88 16 40 H 0.07 1.02 7.92 -1.75 -0.01 1.01 16 41 H 0.05 0.93 8.24 -1.73 -0.01 0.92 16 42 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 43 H 0.04 0.97 8.10 -2.39 -0.02 0.95 16 44 H 0.06 1.22 4.94 -2.39 -0.01 1.21 16 45 H 0.04 1.18 8.17 -2.22 -0.02 1.16 16 46 H 0.05 1.65 7.50 -2.21 -0.02 1.64 16 Total: -1.00 -63.23 341.72 3.48 -59.75 By element: Atomic # 1 Polarization: 18.31 SS G_CDS: 0.19 Total: 18.49 kcal Atomic # 6 Polarization: -44.06 SS G_CDS: 3.66 Total: -40.40 kcal Atomic # 7 Polarization: -82.41 SS G_CDS: -2.39 Total: -84.80 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -63.23 3.48 -59.75 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309464369.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.004 kcal (2) G-P(sol) polarization free energy of solvation -63.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds