Wall clock time and date at job start Mon Mar 30 2020 06:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53004 * 109.47483 * 2 1 4 4 C 1.52999 * 109.47286 * 120.00486 * 2 1 3 5 5 H 1.08999 * 109.46679 * 290.61371 * 4 2 1 6 6 C 1.52994 * 109.47238 * 50.61474 * 4 2 1 7 7 C 1.52999 * 109.47299 * 59.99748 * 6 4 2 8 8 C 1.53004 * 109.46994 * 60.00059 * 7 6 4 9 9 H 1.09004 * 109.46643 * 60.00309 * 8 7 6 10 10 C 1.52998 * 109.47326 * 179.97438 * 8 7 6 11 11 C 1.52994 * 109.47364 * 300.00307 * 8 7 6 12 12 C 1.52998 * 109.47299 * 59.99493 * 11 8 7 13 13 H 1.09001 * 109.47193 * 60.00302 * 12 11 8 14 14 C 1.53004 * 109.47351 * 180.02562 * 12 11 8 15 15 N 1.46902 * 109.46819 * 290.38730 * 14 12 11 16 16 C 1.46900 * 110.99652 * 179.97438 * 15 14 12 17 17 C 1.50702 * 109.46922 * 180.02562 * 16 15 14 18 18 H 1.08006 * 119.99868 * 0.02562 * 17 16 15 19 19 C 1.37882 * 120.00082 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99798 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 119.99998 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47331 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.47085 * 120.00509 * 21 19 17 24 24 H 1.48499 * 109.47379 * 240.00526 * 21 19 17 25 25 H 1.09004 * 109.47054 * 299.99721 * 1 2 3 26 26 H 1.08999 * 109.47289 * 59.99065 * 1 2 3 27 27 H 1.08997 * 109.47672 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47054 * 240.00279 * 2 1 3 29 29 H 1.08993 * 109.47316 * 222.87329 * 3 2 1 30 30 H 1.08997 * 109.46703 * 342.87141 * 3 2 1 31 31 H 1.09000 * 109.46785 * 102.86999 * 3 2 1 32 32 H 1.09004 * 109.47574 * 180.02562 * 6 4 2 33 33 H 1.09009 * 109.47331 * 300.00313 * 6 4 2 34 34 H 1.08998 * 109.47350 * 179.97438 * 7 6 4 35 35 H 1.09001 * 109.47507 * 300.00297 * 7 6 4 36 36 H 1.09001 * 109.47193 * 60.00227 * 10 8 7 37 37 H 1.08999 * 109.47299 * 180.02562 * 10 8 7 38 38 H 1.08998 * 109.47357 * 300.00429 * 10 8 7 39 39 H 1.09004 * 109.47243 * 299.99635 * 11 8 7 40 40 H 1.09000 * 109.47761 * 179.97438 * 11 8 7 41 41 H 1.09003 * 109.47066 * 170.39299 * 14 12 11 42 42 H 1.08993 * 109.47203 * 50.38971 * 14 12 11 43 43 H 1.00895 * 110.99976 * 303.95550 * 15 14 12 44 44 H 1.09001 * 109.47316 * 300.00210 * 16 15 14 45 45 H 1.08996 * 109.47067 * 60.00964 * 16 15 14 46 46 H 0.96996 * 119.99884 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.8200 -0.1199 2.1312 6 6 1.3471 -2.0798 1.3723 7 6 1.6558 -2.9239 0.1341 8 6 3.1676 -3.1308 0.0220 9 1 3.5310 -3.6448 0.9119 10 6 3.4764 -3.9755 -1.2158 11 6 3.8606 -1.7724 -0.1011 12 6 3.5518 -0.9283 1.1370 13 1 3.9151 -1.4421 2.0270 14 6 4.2443 0.4305 1.0137 15 7 5.6973 0.2525 1.1370 16 6 6.3968 1.5392 1.0226 17 6 7.8816 1.3170 1.1531 18 1 8.2671 0.3197 1.3053 19 6 8.7481 2.3869 1.0771 20 7 8.2787 3.6013 0.8912 21 14 10.5886 2.1114 1.2381 22 1 10.8569 0.6647 1.4389 23 1 11.2683 2.5734 0.0013 24 1 11.1038 2.8770 2.4016 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5140 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 2.8712 1.5340 -0.6991 30 1 1.2353 2.1124 -0.3027 31 1 2.3770 1.7087 1.0019 32 1 1.7101 -2.5936 2.2625 33 1 0.2700 -1.9325 1.4521 34 1 1.1625 -3.8919 0.2220 35 1 1.2925 -2.4101 -0.7559 36 1 3.1130 -3.4620 -2.1060 37 1 4.5534 -4.1232 -1.2955 38 1 2.9828 -4.9432 -1.1277 39 1 3.4973 -1.2584 -0.9911 40 1 4.9377 -1.9197 -0.1805 41 1 3.8908 1.0916 1.8049 42 1 4.0131 0.8694 0.0432 43 1 5.9326 -0.2118 2.0013 44 1 6.1804 1.9854 0.0519 45 1 6.0584 2.2083 1.8137 46 1 8.8882 4.3539 0.8381 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309700147.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:57:59 Heat of formation + Delta-G solvation = -34.972656 kcal Electronic energy + Delta-G solvation = -20061.389940 eV Core-core repulsion = 17370.373540 eV Total energy + Delta-G solvation = -2691.016400 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 253.210 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.10892 -35.42328 -34.88344 -32.68506 -31.04074 -30.79601 -27.19165 -26.69146 -26.12140 -23.96875 -22.31469 -21.40312 -20.81658 -20.17063 -18.03418 -16.37210 -15.80707 -14.94804 -14.61819 -14.48735 -14.44723 -14.06360 -13.75759 -13.32325 -12.92225 -12.61856 -12.46583 -12.29907 -12.06218 -11.87302 -11.76475 -11.64802 -11.59720 -11.17620 -10.97619 -10.94629 -10.79998 -10.66918 -10.53613 -10.43252 -9.99176 -9.94850 -9.73219 -9.65147 -9.53368 -9.06226 -8.44227 -7.15592 -5.99834 -4.01274 3.32757 3.39898 3.45214 4.45956 4.66626 4.79007 4.84854 5.07520 5.13846 5.15727 5.28642 5.36183 5.38406 5.56403 5.58385 5.60170 5.67531 5.75018 5.81214 5.83257 5.84394 5.90795 5.96929 6.00639 6.03914 6.06779 6.14755 6.22473 6.24952 6.26736 6.33299 6.38092 6.49143 6.59147 6.62609 6.65810 6.83368 6.89040 7.33271 7.49410 7.84130 8.19056 8.48445 8.70459 9.09045 9.63648 11.11381 Molecular weight = 253.21amu Principal moments of inertia in cm(-1) A = 0.026298 B = 0.004850 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.462518 B = 5771.788684 C = 6484.228425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.158 4.158 4 C -0.076 4.076 5 H 0.064 0.936 6 C -0.115 4.115 7 C -0.113 4.113 8 C -0.093 4.093 9 H 0.064 0.936 10 C -0.146 4.146 11 C -0.100 4.100 12 C -0.076 4.076 13 H 0.062 0.938 14 C 0.049 3.951 15 N -0.690 5.690 16 C 0.195 3.805 17 C -0.511 4.511 18 H 0.062 0.938 19 C 0.055 3.945 20 N -0.899 5.899 21 Si 0.897 3.103 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.285 1.285 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.056 0.944 28 H 0.076 0.924 29 H 0.064 0.936 30 H 0.045 0.955 31 H 0.063 0.937 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.063 0.937 36 H 0.051 0.949 37 H 0.055 0.945 38 H 0.047 0.953 39 H 0.059 0.941 40 H 0.076 0.924 41 H 0.015 0.985 42 H 0.082 0.918 43 H 0.324 0.676 44 H 0.026 0.974 45 H -0.017 1.017 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.877 -11.107 -1.389 19.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.110 4.110 3 C -0.215 4.215 4 C -0.095 4.095 5 H 0.083 0.917 6 C -0.152 4.152 7 C -0.151 4.151 8 C -0.111 4.111 9 H 0.083 0.917 10 C -0.203 4.203 11 C -0.138 4.138 12 C -0.095 4.095 13 H 0.081 0.919 14 C -0.080 4.080 15 N -0.320 5.320 16 C 0.068 3.932 17 C -0.550 4.550 18 H 0.080 0.920 19 C -0.146 4.146 20 N -0.539 5.539 21 Si 0.725 3.275 22 H -0.197 1.197 23 H -0.210 1.210 24 H -0.211 1.211 25 H 0.069 0.931 26 H 0.068 0.932 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.082 0.918 30 H 0.064 0.936 31 H 0.082 0.918 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.082 0.918 36 H 0.070 0.930 37 H 0.074 0.926 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.094 0.906 41 H 0.033 0.967 42 H 0.100 0.900 43 H 0.140 0.860 44 H 0.044 0.956 45 H 0.001 0.999 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -15.727 -11.070 -2.084 19.345 hybrid contribution 0.820 0.488 0.993 1.377 sum -14.908 -10.582 -1.092 18.315 Atomic orbital electron populations 1.21990 0.95990 1.01383 1.01181 1.21205 0.94857 0.96210 0.98763 1.22364 1.00599 0.95637 1.02881 1.21258 0.95139 0.95576 0.97556 0.91734 1.21618 0.99846 0.95787 0.97998 1.21613 0.96041 0.98998 0.98439 1.21163 0.95128 0.96791 0.98063 0.91728 1.21815 1.01480 0.99082 0.97941 1.21566 1.01198 0.93553 0.97446 1.21137 0.93294 0.96559 0.98520 0.91913 1.22610 0.89677 0.94756 1.00967 1.60675 1.04593 1.26000 1.40740 1.19513 0.93113 0.84631 0.95939 1.21256 0.91221 0.93740 1.48763 0.91988 1.24994 0.99109 0.95083 0.95463 1.69976 1.34777 0.98699 1.50407 0.86451 0.85215 0.78261 0.77540 1.19672 1.21031 1.21144 0.93059 0.93232 0.92547 0.90619 0.91771 0.93581 0.91767 0.92460 0.92036 0.92908 0.91843 0.92964 0.92610 0.93380 0.92255 0.90575 0.96730 0.90041 0.86029 0.95617 0.99889 0.93045 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.21 37.15 0.31 -1.16 16 2 C -0.09 -1.07 1.75 -90.62 -0.16 -1.23 16 3 C -0.16 -2.06 7.95 37.16 0.30 -1.77 16 4 C -0.08 -0.92 1.89 -90.62 -0.17 -1.09 16 5 H 0.06 0.81 7.92 -51.93 -0.41 0.40 16 6 C -0.12 -1.20 4.90 -26.73 -0.13 -1.33 16 7 C -0.11 -1.16 4.78 -26.73 -0.13 -1.29 16 8 C -0.09 -1.07 2.72 -90.62 -0.25 -1.31 16 9 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 10 C -0.15 -1.55 9.19 37.16 0.34 -1.20 16 11 C -0.10 -1.39 4.12 -26.74 -0.11 -1.50 16 12 C -0.08 -1.08 2.09 -90.62 -0.19 -1.27 16 13 H 0.06 0.92 8.11 -51.93 -0.42 0.50 16 14 C 0.05 0.87 3.47 -3.82 -0.01 0.86 16 15 N -0.69 -14.92 6.15 -115.06 -0.71 -15.62 16 16 C 0.19 5.20 5.44 -4.97 -0.03 5.17 16 17 C -0.51 -14.72 9.32 -34.44 -0.32 -15.04 16 18 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 19 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 20 N -0.90 -27.25 13.29 55.43 0.74 -26.52 16 21 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 22 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 24 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.06 0.51 5.87 -51.93 -0.30 0.21 16 28 H 0.08 0.92 4.87 -51.93 -0.25 0.67 16 29 H 0.06 0.92 6.23 -51.93 -0.32 0.60 16 30 H 0.05 0.54 7.68 -51.93 -0.40 0.14 16 31 H 0.06 0.90 5.53 -51.93 -0.29 0.62 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.58 6.31 -51.92 -0.33 0.25 16 34 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.06 0.65 6.26 -51.93 -0.33 0.33 16 36 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 39 H 0.06 0.83 6.23 -51.93 -0.32 0.51 16 40 H 0.08 1.23 7.90 -51.93 -0.41 0.82 16 41 H 0.01 0.27 6.94 -51.93 -0.36 -0.09 16 42 H 0.08 1.48 4.63 -51.93 -0.24 1.24 16 43 H 0.32 6.79 8.70 -39.29 -0.34 6.45 16 44 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 45 H -0.02 -0.47 8.14 -51.93 -0.42 -0.90 16 46 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 332.29 15.07 5.01 5.01 Total: -1.00 -29.31 332.29 -9.14 -38.44 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -8.50 Total: 2.43 kcal Atomic # 6 Polarization: -20.03 SS G_CDS: -0.65 Total: -20.68 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 0.03 Total: -42.14 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.31 -9.14 -38.44 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309700147.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.471 kcal (2) G-P(sol) polarization free energy of solvation -29.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.444 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds